Wall clock time and date at job start Mon Mar 30 2020 01:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46873 * 2 1 4 4 H 1.08999 * 109.47272 * 304.12967 * 3 2 1 5 5 O 1.42908 * 109.46772 * 64.13035 * 3 2 1 6 6 C 1.42898 * 114.00027 * 254.04767 * 5 3 2 7 7 C 1.50703 * 109.46969 * 184.12556 * 3 2 1 8 8 O 1.21279 * 120.00028 * 251.65668 * 7 3 2 9 9 N 1.34779 * 119.99590 * 71.66410 * 7 3 2 10 10 C 1.47868 * 126.94305 * 355.66465 * 9 7 3 11 11 C 1.56023 * 105.10008 * 182.02368 * 10 9 7 12 12 H 1.09005 * 116.24673 * 159.68032 * 11 10 9 13 13 C 1.58887 * 100.03392 * 32.52107 * 11 10 9 14 14 C 1.49287 * 126.94177 * 175.68801 * 9 7 3 15 15 H 1.09000 * 116.15323 * 15.81690 * 14 9 7 16 16 C 1.56023 * 104.09201 * 246.67434 * 14 9 7 17 17 N 1.47866 * 105.10612 * 287.92486 * 16 14 9 18 18 C 1.36938 * 126.94345 * 182.00261 * 17 16 14 19 19 H 1.08002 * 119.99866 * 180.02562 * 18 17 16 20 20 C 1.38810 * 120.00307 * 0.02562 * 18 17 16 21 21 N 1.31619 * 119.99851 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00220 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46917 * 60.00106 * 22 20 18 24 24 H 1.48498 * 109.47287 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47040 * 300.00119 * 22 20 18 26 26 H 1.09008 * 109.46749 * 179.80314 * 1 2 3 27 27 H 1.09001 * 109.47191 * 299.79875 * 1 2 3 28 28 H 1.08994 * 109.46853 * 59.80639 * 1 2 3 29 29 H 1.09000 * 109.47655 * 240.00114 * 2 1 3 30 30 H 1.08998 * 109.47128 * 120.00034 * 2 1 3 31 31 H 1.09004 * 109.47373 * 64.85404 * 6 5 3 32 32 H 1.08993 * 109.47247 * 184.86360 * 6 5 3 33 33 H 1.09005 * 109.46928 * 304.85831 * 6 5 3 34 34 H 1.09000 * 110.31837 * 300.92353 * 10 9 7 35 35 H 1.08996 * 110.31926 * 63.11934 * 10 9 7 36 36 H 1.08997 * 113.29029 * 192.40690 * 13 11 10 37 37 H 1.08997 * 112.06833 * 64.44186 * 13 11 10 38 38 H 1.09002 * 110.31147 * 46.83306 * 16 14 9 39 39 H 1.09000 * 110.31747 * 169.01668 * 16 14 9 40 40 H 0.97001 * 120.00018 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6175 1.9773 -0.8506 5 8 1.6444 2.0875 1.2124 6 6 0.5807 3.0278 1.0502 7 6 3.5435 1.4438 -0.1022 8 8 4.2164 1.7508 0.8589 9 7 4.1403 1.1038 -1.2619 10 6 3.4794 0.6215 -2.4935 11 6 4.6425 0.3329 -3.4926 12 1 4.4123 -0.3393 -4.3193 13 6 5.7728 -0.1288 -2.4758 14 6 5.6023 1.1377 -1.5622 15 1 6.2679 1.2103 -0.7021 16 6 5.7429 2.2570 -2.6400 17 7 5.1637 1.6804 -3.8722 18 6 5.0935 2.2737 -5.1044 19 1 4.6431 1.7466 -5.9326 20 6 5.6010 3.5524 -5.2891 21 7 6.1503 4.1945 -4.2799 22 14 5.5045 4.3619 -6.9697 23 1 4.0827 4.4772 -7.3827 24 1 6.1124 5.7152 -6.9030 25 1 6.2422 3.5367 -7.9597 26 1 -0.3633 -1.0278 -0.0035 27 1 -0.3633 0.5107 0.8918 28 1 -0.3633 0.5168 -0.8882 29 1 1.8935 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 -0.3229 2.5040 0.7380 32 1 0.3975 3.5360 1.9968 33 1 0.8561 3.7607 0.2918 34 1 2.9200 -0.2917 -2.2901 35 1 2.8183 1.3899 -2.8941 36 1 6.7630 -0.1836 -2.9280 37 1 5.5073 -1.0513 -1.9597 38 1 5.1856 3.1442 -2.3390 39 1 6.7933 2.5035 -2.7949 40 1 6.5053 5.0879 -4.4090 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032311148.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:27 Heat of formation + Delta-G solvation = -21.955614 kcal Electronic energy + Delta-G solvation = -21827.216566 eV Core-core repulsion = 18644.134908 eV Total energy + Delta-G solvation = -3183.081658 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.20139 -38.61925 -36.94160 -33.88964 -33.18872 -31.42835 -29.25793 -28.57545 -27.94512 -25.69321 -25.20181 -23.53544 -21.96744 -20.62485 -19.84680 -18.55888 -17.42869 -16.82635 -16.23683 -15.66465 -15.49444 -15.06820 -14.45910 -14.22024 -13.97004 -13.58201 -13.30717 -13.09297 -12.55588 -12.37567 -12.07413 -11.82719 -11.73156 -11.50814 -11.42365 -11.30616 -11.03137 -10.87003 -10.83949 -10.74125 -10.59642 -10.28708 -10.10366 -9.95235 -9.64010 -9.06807 -8.71092 -8.00183 -6.95686 -5.79395 -3.14327 3.01135 3.11219 3.35155 3.39449 3.41770 4.02589 4.39161 4.66292 4.83775 4.93756 5.05526 5.15443 5.17604 5.25591 5.33704 5.39419 5.48459 5.52465 5.56627 5.63253 5.67950 5.74034 5.77973 5.95074 5.97897 6.12274 6.19130 6.27803 6.40056 6.44305 6.56989 6.66608 7.10403 7.39585 7.47831 7.69218 8.05841 8.09538 8.62002 9.07255 9.68187 10.37531 11.32543 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.022513 B = 0.005613 C = 0.005344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.425403 B = 4986.821152 C = 5238.367904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.136 4.136 3 C 0.078 3.922 4 H 0.085 0.915 5 O -0.359 6.359 6 C 0.026 3.974 7 C 0.523 3.477 8 O -0.537 6.537 9 N -0.606 5.606 10 C 0.080 3.920 11 C 0.140 3.860 12 H 0.107 0.893 13 C -0.149 4.149 14 C 0.098 3.902 15 H 0.113 0.887 16 C 0.174 3.826 17 N -0.597 5.597 18 C -0.233 4.233 19 H 0.080 0.920 20 C -0.005 4.005 21 N -0.919 5.919 22 Si 0.913 3.087 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.284 1.284 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.043 0.957 32 H 0.087 0.913 33 H 0.044 0.956 34 H 0.058 0.942 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.064 0.936 38 H 0.045 0.955 39 H 0.057 0.943 40 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.883 -8.503 5.472 14.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.174 4.174 3 C 0.017 3.983 4 H 0.103 0.897 5 O -0.276 6.276 6 C -0.071 4.071 7 C 0.310 3.690 8 O -0.414 6.414 9 N -0.341 5.341 10 C -0.045 4.045 11 C 0.031 3.969 12 H 0.125 0.875 13 C -0.189 4.189 14 C -0.004 4.004 15 H 0.130 0.870 16 C 0.049 3.951 17 N -0.321 5.321 18 C -0.361 4.361 19 H 0.098 0.902 20 C -0.202 4.202 21 N -0.566 5.566 22 Si 0.743 3.257 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.211 1.211 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.062 0.938 32 H 0.105 0.895 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.104 0.896 37 H 0.082 0.918 38 H 0.063 0.937 39 H 0.075 0.925 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.403 -8.064 6.122 13.818 hybrid contribution -0.327 0.775 -1.139 1.416 sum -9.730 -7.289 4.984 13.139 Atomic orbital electron populations 1.21797 0.94987 1.02052 1.01978 1.21936 0.96823 0.94998 1.03670 1.21991 0.92385 0.95084 0.88868 0.89749 1.87996 1.53379 1.56978 1.29257 1.22963 0.89543 0.91941 1.02622 1.20136 0.89497 0.77579 0.81768 1.90665 1.65736 1.48579 1.36400 1.49170 1.08889 1.64629 1.11433 1.23378 0.97612 0.97900 0.85643 1.23536 0.90609 0.89389 0.93344 0.87546 1.24430 1.00642 0.95883 0.97950 1.24315 0.80625 0.98177 0.97315 0.86964 1.21935 0.98867 0.91553 0.82763 1.45280 1.67198 1.12878 1.06751 1.19002 1.34113 0.97471 0.85549 0.90188 1.24829 1.00686 0.97020 0.97700 1.69910 1.43906 1.13391 1.29367 0.86192 0.77610 0.78646 0.83226 1.21195 1.21608 1.21057 0.92241 0.92158 0.92663 0.90016 0.90645 0.93800 0.89477 0.93763 0.92440 0.91192 0.89562 0.91778 0.93693 0.92452 0.93486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.18 37.16 0.34 -1.12 16 2 C -0.14 -1.66 5.56 -26.73 -0.15 -1.81 16 3 C 0.08 1.20 2.11 -27.88 -0.06 1.14 16 4 H 0.08 1.21 7.54 -51.93 -0.39 0.82 16 5 O -0.36 -5.74 9.55 -54.87 -0.52 -6.26 16 6 C 0.03 0.30 10.43 101.05 1.05 1.36 16 7 C 0.52 10.10 7.22 -10.98 -0.08 10.02 16 8 O -0.54 -12.40 16.88 -14.08 -0.24 -12.64 16 9 N -0.61 -11.27 2.95 -156.78 -0.46 -11.73 16 10 C 0.08 1.32 5.65 -1.67 -0.01 1.31 16 11 C 0.14 2.53 5.55 -61.44 -0.34 2.19 16 12 H 0.11 1.70 8.14 -51.93 -0.42 1.28 16 13 C -0.15 -2.51 6.94 -21.24 -0.15 -2.65 16 14 C 0.10 1.92 5.20 -62.55 -0.33 1.59 16 15 H 0.11 2.18 8.04 -51.93 -0.42 1.76 16 16 C 0.17 4.17 4.75 -1.67 -0.01 4.16 16 17 N -0.60 -14.13 3.04 -155.12 -0.47 -14.60 16 18 C -0.23 -6.11 10.38 -15.06 -0.16 -6.27 16 19 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 20 C -0.01 -0.15 5.49 -17.43 -0.10 -0.24 16 21 N -0.92 -26.64 10.56 55.49 0.59 -26.06 16 22 Si 0.91 21.45 29.55 -169.99 -5.02 16.43 16 23 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 27 H 0.06 0.59 6.53 -51.93 -0.34 0.25 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.08 0.93 5.53 -51.93 -0.29 0.64 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.04 0.42 6.46 -51.93 -0.34 0.08 16 32 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.04 0.53 8.04 -51.93 -0.42 0.11 16 34 H 0.06 0.76 6.01 -51.93 -0.31 0.44 16 35 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.04 1.24 7.67 -51.93 -0.40 0.84 16 39 H 0.06 1.51 7.46 -51.93 -0.39 1.13 16 40 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 316.86 15.07 4.77 4.77 Total: -1.00 -32.39 316.86 -7.55 -39.94 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -6.21 Total: 0.46 kcal Atomic # 6 Polarization: 9.65 SS G_CDS: 0.03 Total: 9.68 kcal Atomic # 7 Polarization: -52.04 SS G_CDS: -0.35 Total: -52.38 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: -0.76 Total: -18.90 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.39 -7.55 -39.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032311148.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.982 kcal (2) G-P(sol) polarization free energy of solvation -32.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds