Wall clock time and date at job start Mon Mar 30 2020 01:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46873 * 2 1 4 4 H 1.08999 * 109.47272 * 304.12967 * 3 2 1 5 5 O 1.42908 * 109.46772 * 64.13035 * 3 2 1 6 6 C 1.42898 * 114.00027 * 254.04767 * 5 3 2 7 7 C 1.50703 * 109.46969 * 184.12556 * 3 2 1 8 8 O 1.21279 * 120.00028 * 251.65668 * 7 3 2 9 9 N 1.34779 * 119.99590 * 71.66410 * 7 3 2 10 10 C 1.47868 * 126.94305 * 355.66465 * 9 7 3 11 11 C 1.56023 * 105.10008 * 182.02368 * 10 9 7 12 12 H 1.09005 * 116.24673 * 159.68032 * 11 10 9 13 13 C 1.58887 * 100.03392 * 32.52107 * 11 10 9 14 14 C 1.49287 * 126.94177 * 175.68801 * 9 7 3 15 15 H 1.09000 * 116.15323 * 15.81690 * 14 9 7 16 16 C 1.56023 * 104.09201 * 246.67434 * 14 9 7 17 17 N 1.47866 * 105.10612 * 287.92486 * 16 14 9 18 18 C 1.36938 * 126.94345 * 182.00261 * 17 16 14 19 19 H 1.08002 * 119.99866 * 180.02562 * 18 17 16 20 20 C 1.38810 * 120.00307 * 0.02562 * 18 17 16 21 21 N 1.31619 * 119.99851 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00220 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46917 * 60.00106 * 22 20 18 24 24 H 1.48498 * 109.47287 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47040 * 300.00119 * 22 20 18 26 26 H 1.09008 * 109.46749 * 179.80314 * 1 2 3 27 27 H 1.09001 * 109.47191 * 299.79875 * 1 2 3 28 28 H 1.08994 * 109.46853 * 59.80639 * 1 2 3 29 29 H 1.09000 * 109.47655 * 240.00114 * 2 1 3 30 30 H 1.08998 * 109.47128 * 120.00034 * 2 1 3 31 31 H 1.09004 * 109.47373 * 64.85404 * 6 5 3 32 32 H 1.08993 * 109.47247 * 184.86360 * 6 5 3 33 33 H 1.09005 * 109.46928 * 304.85831 * 6 5 3 34 34 H 1.09000 * 110.31837 * 300.92353 * 10 9 7 35 35 H 1.08996 * 110.31926 * 63.11934 * 10 9 7 36 36 H 1.08997 * 113.29029 * 192.40690 * 13 11 10 37 37 H 1.08997 * 112.06833 * 64.44186 * 13 11 10 38 38 H 1.09002 * 110.31147 * 46.83306 * 16 14 9 39 39 H 1.09000 * 110.31747 * 169.01668 * 16 14 9 40 40 H 0.97001 * 120.00018 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6175 1.9773 -0.8506 5 8 1.6444 2.0875 1.2124 6 6 0.5807 3.0278 1.0502 7 6 3.5435 1.4438 -0.1022 8 8 4.2164 1.7508 0.8589 9 7 4.1403 1.1038 -1.2619 10 6 3.4794 0.6215 -2.4935 11 6 4.6425 0.3329 -3.4926 12 1 4.4123 -0.3393 -4.3193 13 6 5.7728 -0.1288 -2.4758 14 6 5.6023 1.1377 -1.5622 15 1 6.2679 1.2103 -0.7021 16 6 5.7429 2.2570 -2.6400 17 7 5.1637 1.6804 -3.8722 18 6 5.0935 2.2737 -5.1044 19 1 4.6431 1.7466 -5.9326 20 6 5.6010 3.5524 -5.2891 21 7 6.1503 4.1945 -4.2799 22 14 5.5045 4.3619 -6.9697 23 1 4.0827 4.4772 -7.3827 24 1 6.1124 5.7152 -6.9030 25 1 6.2422 3.5367 -7.9597 26 1 -0.3633 -1.0278 -0.0035 27 1 -0.3633 0.5107 0.8918 28 1 -0.3633 0.5168 -0.8882 29 1 1.8935 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 -0.3229 2.5040 0.7380 32 1 0.3975 3.5360 1.9968 33 1 0.8561 3.7607 0.2918 34 1 2.9200 -0.2917 -2.2901 35 1 2.8183 1.3899 -2.8941 36 1 6.7630 -0.1836 -2.9280 37 1 5.5073 -1.0513 -1.9597 38 1 5.1856 3.1442 -2.3390 39 1 6.7933 2.5035 -2.7949 40 1 6.5053 5.0879 -4.4090 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032311148.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:26 Heat of formation + Delta-G solvation = -43.042972 kcal Electronic energy + Delta-G solvation = -21828.130982 eV Core-core repulsion = 18644.134908 eV Total energy + Delta-G solvation = -3183.996074 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.69819 -39.99126 -38.35924 -35.55480 -34.44108 -33.08339 -30.87521 -30.21797 -29.05674 -26.98544 -26.75944 -25.15693 -23.08489 -22.09373 -21.41604 -20.16196 -18.97854 -18.27287 -17.73965 -17.10842 -16.80204 -16.53906 -16.04645 -15.73395 -15.25757 -14.98858 -14.72230 -14.31959 -13.81734 -13.61467 -13.48964 -13.41195 -13.08674 -12.89276 -12.87423 -12.66752 -12.59146 -12.36722 -12.30680 -12.13976 -12.09688 -11.87226 -11.73465 -11.47983 -11.18221 -10.76101 -10.35622 -9.56533 -8.91451 -7.84392 -5.20443 1.47285 1.49870 1.52399 1.56323 1.76246 2.48942 2.87465 3.29461 3.35799 3.52524 3.74280 3.81156 3.89273 3.91216 4.01053 4.18513 4.26676 4.39457 4.45896 4.53692 4.59161 4.64323 4.76857 4.81129 4.88000 4.91430 5.02354 5.09223 5.14199 5.14874 5.24033 5.38678 5.44430 5.50707 5.64587 6.04102 6.09347 6.61331 7.02344 7.12051 7.71007 8.41701 9.26798 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.022513 B = 0.005613 C = 0.005344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.425403 B = 4986.821152 C = 5238.367904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.129 4.129 3 C 0.084 3.916 4 H 0.093 0.907 5 O -0.387 6.387 6 C 0.020 3.980 7 C 0.512 3.488 8 O -0.586 6.586 9 N -0.606 5.606 10 C 0.086 3.914 11 C 0.136 3.864 12 H 0.140 0.860 13 C -0.127 4.127 14 C 0.097 3.903 15 H 0.108 0.892 16 C 0.188 3.812 17 N -0.616 5.616 18 C -0.229 4.229 19 H 0.098 0.902 20 C -0.073 4.073 21 N -0.960 5.960 22 Si 0.978 3.022 23 H -0.275 1.275 24 H -0.305 1.305 25 H -0.273 1.273 26 H 0.078 0.922 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.094 0.906 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.100 0.900 33 H 0.037 0.963 34 H 0.108 0.892 35 H 0.056 0.944 36 H 0.083 0.917 37 H 0.102 0.898 38 H -0.006 1.006 39 H 0.018 0.982 40 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.248 -11.267 4.471 17.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.167 4.167 3 C 0.023 3.977 4 H 0.111 0.889 5 O -0.305 6.305 6 C -0.076 4.076 7 C 0.302 3.698 8 O -0.466 6.466 9 N -0.340 5.340 10 C -0.037 4.037 11 C 0.029 3.971 12 H 0.158 0.842 13 C -0.166 4.166 14 C -0.006 4.006 15 H 0.125 0.875 16 C 0.062 3.938 17 N -0.340 5.340 18 C -0.358 4.358 19 H 0.116 0.884 20 C -0.265 4.265 21 N -0.609 5.609 22 Si 0.806 3.194 23 H -0.201 1.201 24 H -0.232 1.232 25 H -0.199 1.199 26 H 0.097 0.903 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.113 0.887 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.119 0.881 33 H 0.055 0.945 34 H 0.126 0.874 35 H 0.075 0.925 36 H 0.101 0.899 37 H 0.120 0.880 38 H 0.012 0.988 39 H 0.037 0.963 40 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -11.816 -10.893 5.092 16.859 hybrid contribution 0.398 1.625 -0.794 1.852 sum -11.419 -9.268 4.298 15.322 Atomic orbital electron populations 1.21782 0.92753 1.03467 1.02359 1.21925 0.98633 0.92302 1.03793 1.22064 0.89165 0.97449 0.89067 0.88880 1.87959 1.54846 1.57888 1.29853 1.23185 0.89432 0.91555 1.03415 1.21059 0.91373 0.76298 0.81113 1.90631 1.67190 1.50662 1.38136 1.49254 1.08428 1.64262 1.12093 1.23373 0.96810 0.99484 0.84063 1.23988 0.91266 0.87013 0.94789 0.84249 1.24338 1.00190 0.95594 0.96456 1.24147 0.81913 0.98137 0.96403 0.87453 1.21508 0.95760 0.91672 0.84867 1.45534 1.67539 1.15128 1.05828 1.19530 1.31994 0.97346 0.86948 0.88397 1.25682 1.01618 0.98238 1.00972 1.70165 1.46088 1.13163 1.31478 0.85154 0.77836 0.76893 0.79467 1.20132 1.23173 1.19886 0.90326 0.92433 0.91652 0.88732 0.91567 0.91071 0.88117 0.94461 0.87418 0.92515 0.89892 0.87951 0.98828 0.96341 0.94762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.18 71.98 0.66 -1.60 16 2 C -0.13 -2.73 5.56 30.60 0.17 -2.56 16 3 C 0.08 2.44 2.11 29.85 0.06 2.50 16 4 H 0.09 2.51 7.54 -2.39 -0.02 2.50 16 5 O -0.39 -12.08 9.55 -130.21 -1.24 -13.32 16 6 C 0.02 0.44 10.43 113.37 1.18 1.62 16 7 C 0.51 19.69 7.22 87.66 0.63 20.32 16 8 O -0.59 -27.78 16.88 15.75 0.27 -27.51 16 9 N -0.61 -21.96 2.95 -768.31 -2.27 -24.23 16 10 C 0.09 2.58 5.65 87.16 0.49 3.07 16 11 C 0.14 4.48 5.55 47.60 0.26 4.74 16 12 H 0.14 3.74 8.14 -2.38 -0.02 3.72 16 13 C -0.13 -3.90 6.94 34.15 0.24 -3.67 16 14 C 0.10 3.83 5.20 46.94 0.24 4.07 16 15 H 0.11 4.30 8.04 -2.39 -0.02 4.28 16 16 C 0.19 9.43 4.75 87.17 0.41 9.84 16 17 N -0.62 -28.98 3.04 -644.68 -1.96 -30.94 16 18 C -0.23 -11.91 10.38 84.03 0.87 -11.04 16 19 H 0.10 4.63 7.83 -2.91 -0.02 4.61 16 20 C -0.07 -4.04 5.49 84.86 0.47 -3.57 16 21 N -0.96 -58.48 10.56 21.65 0.23 -58.25 16 22 Si 0.98 44.67 29.55 68.60 2.03 46.70 16 23 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 24 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 25 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 26 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 27 H 0.06 0.93 6.53 -2.39 -0.02 0.92 16 28 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.09 1.71 5.53 -2.39 -0.01 1.70 16 30 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.07 1.17 6.46 -2.39 -0.02 1.15 16 32 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.04 0.86 8.04 -2.38 -0.02 0.84 16 34 H 0.11 2.22 6.01 -2.39 -0.01 2.21 16 35 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 37 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 38 H -0.01 -0.39 7.67 -2.39 -0.02 -0.40 16 39 H 0.02 1.05 7.46 -2.39 -0.02 1.03 16 40 H 0.24 14.69 8.31 -92.71 -0.77 13.92 16 Total: -1.00 -75.19 316.86 3.77 -71.42 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: 1.02 Total: 12.41 kcal Atomic # 6 Polarization: 18.04 SS G_CDS: 5.70 Total: 23.74 kcal Atomic # 7 Polarization: -109.43 SS G_CDS: -4.00 Total: -113.43 kcal Atomic # 8 Polarization: -39.86 SS G_CDS: -0.98 Total: -40.83 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -75.19 3.77 -71.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032311148.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.377 kcal (2) G-P(sol) polarization free energy of solvation -75.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds