Wall clock time and date at job start Mon Mar 30 2020 01:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47000 * 2 1 4 4 C 1.50700 * 109.47208 * 179.97438 * 3 2 1 5 5 O 1.21283 * 119.99803 * 359.97438 * 4 3 2 6 6 N 1.34777 * 119.99675 * 180.27843 * 4 3 2 7 7 C 1.47122 * 121.05666 * 359.44166 * 6 4 3 8 8 C 1.52767 * 108.97742 * 232.17082 * 7 6 4 9 9 O 1.43105 * 109.42408 * 306.12649 * 8 7 6 10 10 C 1.42484 * 113.97474 * 59.82460 * 9 8 7 11 11 C 1.53463 * 113.76395 * 73.17320 * 10 9 8 12 12 N 1.47663 * 85.96936 * 91.28746 * 11 10 9 13 13 C 1.36945 * 134.45943 * 204.31125 * 12 11 10 14 14 H 1.08002 * 119.99852 * 179.97438 * 13 12 11 15 15 C 1.38804 * 119.99676 * 359.97397 * 13 12 11 16 16 N 1.31617 * 120.00279 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99972 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47062 * 90.00183 * 17 15 13 19 19 H 1.48499 * 109.47117 * 210.00325 * 17 15 13 20 20 H 1.48498 * 109.46815 * 330.00124 * 17 15 13 21 21 C 1.47676 * 91.08530 * 24.29582 * 12 11 10 22 22 C 1.47348 * 121.05130 * 179.72573 * 6 4 3 23 23 H 1.08995 * 109.47672 * 299.99669 * 1 2 3 24 24 H 1.09001 * 109.47109 * 60.00906 * 1 2 3 25 25 H 1.09004 * 109.46774 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47849 * 239.99917 * 2 1 3 27 27 H 1.08998 * 109.47443 * 119.99785 * 2 1 3 28 28 H 1.09009 * 109.46730 * 59.99606 * 3 2 1 29 29 H 1.08998 * 109.46846 * 300.00150 * 3 2 1 30 30 H 1.09000 * 109.59696 * 352.00344 * 7 6 4 31 31 H 1.08998 * 109.59342 * 112.45628 * 7 6 4 32 32 H 1.09005 * 109.56865 * 186.06591 * 8 7 6 33 33 H 1.09007 * 109.35726 * 66.05266 * 8 7 6 34 34 H 1.09004 * 113.79658 * 205.55283 * 11 10 9 35 35 H 1.09007 * 113.79349 * 337.02657 * 11 10 9 36 36 H 0.97007 * 120.00288 * 179.97438 * 16 15 13 37 37 H 1.09009 * 113.78653 * 221.43804 * 21 12 11 38 38 H 1.08992 * 113.89911 * 89.98555 * 21 12 11 39 39 H 1.08998 * 109.74662 * 251.23685 * 22 6 4 40 40 H 1.08996 * 109.74531 * 11.91654 * 22 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 0.0006 5 8 4.1534 0.3923 0.0015 6 7 4.2207 2.6099 0.0064 7 6 3.5087 3.8973 -0.0001 8 6 4.0536 4.7606 -1.1365 9 8 5.4757 4.8648 -1.0152 10 6 6.1546 3.6133 -1.0696 11 6 6.1987 2.9942 -2.4731 12 7 7.4803 3.7096 -2.6349 13 6 8.1964 4.1634 -3.7105 14 1 9.1359 4.6735 -3.5573 15 6 7.7145 3.9679 -4.9974 16 7 6.5692 3.3467 -5.1840 17 14 8.6908 4.5875 -6.4645 18 1 9.6256 3.5275 -6.9204 19 1 7.7596 4.9344 -7.5680 20 1 9.4634 5.7932 -6.0713 21 6 7.6803 3.7399 -1.1721 22 6 5.6940 2.6370 0.0132 23 1 -0.3634 0.5137 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.6765 1.9564 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 2.4432 3.7250 -0.1524 31 1 3.6666 4.4071 0.9503 32 1 3.6103 5.7551 -1.0844 33 1 3.8029 4.3003 -2.0922 34 1 6.2981 1.9087 -2.4721 35 1 5.4097 3.3501 -3.1358 36 1 6.2322 3.2104 -6.0834 37 1 8.0687 4.6885 -0.8010 38 1 8.2204 2.8773 -0.7823 39 1 6.0516 2.9715 0.9870 40 1 6.0816 1.6407 -0.1992 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053125500.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:39 Heat of formation + Delta-G solvation = -20.603074 kcal Electronic energy + Delta-G solvation = -21535.522864 eV Core-core repulsion = 18352.499857 eV Total energy + Delta-G solvation = -3183.023007 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.37843 -38.76181 -36.21681 -34.49723 -34.36776 -32.24485 -30.10343 -28.69855 -27.41693 -25.66305 -25.05868 -23.27500 -22.29098 -21.30659 -19.16571 -18.69146 -17.09048 -16.78665 -16.17085 -15.93223 -15.46786 -14.93481 -14.65709 -14.30280 -14.11173 -13.86669 -13.40268 -13.28192 -13.14128 -12.67426 -12.38126 -12.07029 -12.01818 -11.79865 -11.32886 -11.18652 -11.11222 -10.87098 -10.83049 -10.78173 -10.63300 -10.21952 -9.96318 -9.60098 -9.49747 -9.21453 -8.80613 -8.20881 -6.85835 -5.73175 -3.05452 2.75929 3.03121 3.41795 3.46123 3.48383 4.06526 4.46202 4.51519 4.77322 4.90277 4.94531 5.03516 5.13897 5.25047 5.27571 5.34829 5.36745 5.41947 5.50417 5.55884 5.65215 5.76338 5.84578 5.90830 5.99873 6.06199 6.10663 6.22728 6.31969 6.48295 6.51149 6.60620 7.03039 7.21053 7.49936 7.52193 7.83264 8.00174 8.29638 9.06768 9.73552 10.60159 11.44031 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.025148 B = 0.004990 C = 0.004673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.125189 B = 5609.432212 C = 5990.490085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.110 4.110 3 C -0.139 4.139 4 C 0.514 3.486 5 O -0.541 6.541 6 N -0.612 5.612 7 C 0.074 3.926 8 C 0.046 3.954 9 O -0.342 6.342 10 C 0.049 3.951 11 C 0.152 3.848 12 N -0.604 5.604 13 C -0.219 4.219 14 H 0.081 0.919 15 C -0.008 4.008 16 N -0.923 5.923 17 Si 0.913 3.087 18 H -0.289 1.289 19 H -0.290 1.290 20 H -0.280 1.280 21 C 0.136 3.864 22 C 0.099 3.901 23 H 0.053 0.947 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.101 0.899 33 H 0.060 0.940 34 H 0.033 0.967 35 H 0.075 0.925 36 H 0.253 0.747 37 H 0.056 0.944 38 H 0.050 0.950 39 H 0.067 0.933 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.881 -0.632 12.598 17.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.148 4.148 3 C -0.179 4.179 4 C 0.303 3.697 5 O -0.418 6.418 6 N -0.346 5.346 7 C -0.049 4.049 8 C -0.032 4.032 9 O -0.260 6.260 10 C 0.007 3.993 11 C 0.026 3.974 12 N -0.329 5.329 13 C -0.346 4.346 14 H 0.099 0.901 15 C -0.204 4.204 16 N -0.571 5.571 17 Si 0.743 3.257 18 H -0.216 1.216 19 H -0.217 1.217 20 H -0.206 1.206 21 C 0.009 3.991 22 C -0.024 4.024 23 H 0.072 0.928 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.089 0.911 27 H 0.086 0.914 28 H 0.108 0.892 29 H 0.111 0.889 30 H 0.109 0.891 31 H 0.093 0.907 32 H 0.119 0.881 33 H 0.078 0.922 34 H 0.051 0.949 35 H 0.094 0.906 36 H 0.063 0.937 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.086 0.914 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -11.393 -0.952 12.267 16.769 hybrid contribution 0.334 0.141 -0.923 0.992 sum -11.060 -0.810 11.344 15.864 Atomic orbital electron populations 1.21791 0.95610 1.01846 1.01684 1.21288 0.95080 0.94802 1.03631 1.21736 0.92024 1.00083 1.04061 1.20715 0.90243 0.83043 0.75703 1.90689 1.70424 1.30808 1.49909 1.48202 1.07201 1.05741 1.73477 1.22343 0.97191 0.84790 1.00580 1.22789 0.82997 1.00173 0.97251 1.87926 1.16920 1.27662 1.93472 1.23689 0.94715 0.84712 0.96143 1.22671 0.90508 0.94311 0.89885 1.45788 1.22499 1.65253 0.99408 1.19011 1.01993 1.29925 0.83689 0.90106 1.24763 0.97597 1.00918 0.97137 1.69819 1.20079 1.46653 1.20504 0.86107 0.78831 0.78344 0.82417 1.21634 1.21669 1.20576 1.22488 0.90039 0.99370 0.87171 1.22236 0.78992 1.01995 0.99205 0.92834 0.92627 0.92500 0.91067 0.91362 0.89170 0.88861 0.89140 0.90739 0.88127 0.92153 0.94915 0.90641 0.93724 0.92625 0.93246 0.91436 0.88098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.91 37.16 0.37 -0.85 16 2 C -0.11 -1.17 5.22 -26.73 -0.14 -1.31 16 3 C -0.14 -1.47 4.07 -27.88 -0.11 -1.58 16 4 C 0.51 7.79 7.71 -10.98 -0.08 7.70 16 5 O -0.54 -10.26 15.48 5.55 0.09 -10.17 16 6 N -0.61 -9.08 3.03 -172.71 -0.52 -9.61 16 7 C 0.07 0.86 6.47 -3.82 -0.02 0.84 16 8 C 0.05 0.67 6.87 37.04 0.25 0.92 16 9 O -0.34 -6.61 10.52 -35.23 -0.37 -6.98 16 10 C 0.05 0.97 1.21 -90.30 -0.11 0.86 16 11 C 0.15 3.74 6.65 -3.17 -0.02 3.72 16 12 N -0.60 -16.09 3.70 -180.35 -0.67 -16.76 16 13 C -0.22 -6.33 10.70 -15.06 -0.16 -6.49 16 14 H 0.08 2.24 7.83 -52.49 -0.41 1.83 16 15 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 16 N -0.92 -28.09 11.39 55.49 0.63 -27.46 16 17 Si 0.91 22.63 29.55 -169.99 -5.02 17.60 16 18 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 19 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 C 0.14 2.89 8.33 -3.18 -0.03 2.86 16 22 C 0.10 1.66 5.78 -3.63 -0.02 1.64 16 23 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 27 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 28 H 0.09 0.73 8.00 -51.92 -0.42 0.32 16 29 H 0.09 0.88 7.68 -51.93 -0.40 0.48 16 30 H 0.09 0.77 6.03 -51.93 -0.31 0.45 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.06 1.00 7.19 -51.92 -0.37 0.63 16 34 H 0.03 0.85 7.94 -51.93 -0.41 0.44 16 35 H 0.08 2.06 6.30 -51.93 -0.33 1.73 16 36 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 37 H 0.06 1.14 8.14 -51.92 -0.42 0.72 16 38 H 0.05 0.97 8.09 -51.93 -0.42 0.55 16 39 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.10 1.85 6.91 -51.93 -0.36 1.49 16 LS Contribution 320.91 15.07 4.84 4.84 Total: -1.00 -34.68 320.91 -7.57 -42.25 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -6.37 Total: -1.70 kcal Atomic # 6 Polarization: 8.17 SS G_CDS: -0.18 Total: 7.99 kcal Atomic # 7 Polarization: -53.27 SS G_CDS: -0.56 Total: -53.83 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: -0.28 Total: -17.15 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -34.68 -7.57 -42.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053125500.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.650 kcal (2) G-P(sol) polarization free energy of solvation -34.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds