Wall clock time and date at job start Mon Mar 30 2020 01:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47309 * 2 1 4 4 C 1.50697 * 109.47670 * 120.00370 * 2 1 3 5 5 O 1.21285 * 119.99934 * 359.97438 * 4 2 1 6 6 N 1.34777 * 120.00519 * 180.02562 * 4 2 1 7 7 C 1.46496 * 120.00399 * 179.97438 * 6 4 2 8 8 H 1.09003 * 110.77079 * 328.53309 * 7 6 4 9 9 C 1.55063 * 110.86994 * 92.28785 * 7 6 4 10 10 O 1.44599 * 103.66842 * 81.64338 * 9 7 6 11 11 C 1.42846 * 106.73521 * 39.08822 * 10 9 7 12 12 C 1.52653 * 115.96585 * 202.47029 * 11 10 9 13 13 N 1.47224 * 87.78043 * 218.41234 * 12 11 10 14 14 C 1.36931 * 135.96376 * 206.38030 * 13 12 11 15 15 H 1.08002 * 120.00438 * 0.02562 * 14 13 12 16 16 C 1.38817 * 119.99680 * 179.72312 * 14 13 12 17 17 N 1.31614 * 119.99888 * 0.27479 * 16 14 13 18 18 Si 1.86803 * 119.99862 * 180.27671 * 16 14 13 19 19 H 1.48498 * 109.47174 * 90.00121 * 18 16 14 20 20 H 1.48501 * 109.47062 * 210.00072 * 18 16 14 21 21 H 1.48504 * 109.46913 * 329.99871 * 18 16 14 22 22 C 1.47220 * 88.06760 * 26.63433 * 13 12 11 23 23 C 1.53317 * 108.32613 * 334.30564 * 11 10 9 24 24 H 1.09005 * 109.46946 * 299.99358 * 1 2 3 25 25 H 1.08996 * 109.47414 * 59.99694 * 1 2 3 26 26 H 1.09003 * 109.46576 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46946 * 240.00642 * 2 1 3 28 28 H 1.08995 * 109.47609 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.46787 * 300.00542 * 3 2 1 30 30 H 1.08997 * 109.46976 * 59.99884 * 3 2 1 31 31 H 0.97003 * 119.99666 * 359.97438 * 6 4 2 32 32 H 1.09000 * 110.58523 * 200.18961 * 9 7 6 33 33 H 1.09004 * 110.58359 * 323.09383 * 9 7 6 34 34 H 1.09002 * 113.49461 * 103.68038 * 12 11 10 35 35 H 1.09001 * 113.50017 * 333.14362 * 12 11 10 36 36 H 0.97005 * 119.99715 * 179.97438 * 17 16 14 37 37 H 1.09001 * 113.49518 * 88.09122 * 22 13 12 38 38 H 1.08998 * 113.50705 * 218.63960 * 22 13 12 39 39 H 1.09002 * 110.56619 * 120.19354 * 23 11 10 40 40 H 1.08999 * 110.56481 * 243.04261 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2303 5 8 1.2444 -1.1711 2.0290 6 7 3.3575 -0.8331 1.4439 7 6 3.8459 -1.5233 2.6402 8 1 3.1551 -1.3897 3.4727 9 6 4.0851 -3.0278 2.3511 10 8 5.3865 -3.0520 1.7212 11 6 6.1929 -2.0923 2.4062 12 6 7.3909 -1.5506 1.6306 13 7 8.1495 -1.5829 2.8919 14 6 9.2194 -0.9069 3.4148 15 1 9.7037 -0.1331 2.8377 16 6 9.6777 -1.2120 4.6891 17 7 9.0872 -2.1547 5.3926 18 14 11.1325 -0.2847 5.4054 19 1 10.6449 0.9122 6.1369 20 1 11.8715 -1.1697 6.3412 21 1 12.0374 0.1407 4.3075 22 6 7.2580 -2.6644 3.3424 23 6 5.2676 -1.0342 3.0183 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3632 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.9878 -0.4644 0.8053 32 1 4.0979 -3.5992 3.2792 33 1 3.3238 -3.4135 1.6729 34 1 7.2374 -0.5441 1.2412 35 1 7.7698 -2.2417 0.8777 36 1 9.4076 -2.3681 6.2829 37 1 7.6009 -3.6583 3.0549 38 1 6.9924 -2.5978 4.3975 39 1 5.3860 -1.0024 4.1014 40 1 5.4642 -0.0550 2.5818 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053743795.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:42 Heat of formation + Delta-G solvation = -29.303907 kcal Electronic energy + Delta-G solvation = -21138.205761 eV Core-core repulsion = 17954.805457 eV Total energy + Delta-G solvation = -3183.400303 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.43584 -39.31570 -36.42627 -34.61428 -34.26685 -32.13808 -30.29821 -28.14683 -27.28180 -25.81988 -24.78634 -23.94720 -22.10469 -21.05830 -20.00069 -18.81603 -17.30350 -16.89408 -16.46746 -15.57850 -15.21255 -15.04026 -14.83998 -14.29310 -13.92205 -13.79179 -13.71594 -12.99772 -12.78997 -12.51898 -12.44417 -12.19632 -12.02928 -11.44964 -11.40997 -11.30018 -11.26207 -11.06808 -10.93339 -10.81543 -10.72870 -10.58746 -10.08136 -9.72191 -9.57081 -9.13375 -8.86092 -8.61479 -6.95481 -5.82122 -3.15512 2.60476 3.14665 3.36086 3.40738 3.43237 4.21239 4.47328 4.50883 4.67001 4.72711 4.79848 5.06217 5.15786 5.20881 5.28687 5.34140 5.37388 5.49667 5.50985 5.59283 5.61920 5.70422 5.87788 5.90798 5.92539 6.04804 6.17069 6.28845 6.35523 6.52023 6.57497 6.62256 6.95272 7.16244 7.45509 7.50775 7.61643 7.90895 8.20867 8.97626 9.64174 10.56554 11.35292 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.033291 B = 0.004174 C = 0.003990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.861799 B = 6706.977738 C = 7016.145940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.116 4.116 3 C -0.145 4.145 4 C 0.516 3.484 5 O -0.545 6.545 6 N -0.713 5.713 7 C 0.106 3.894 8 H 0.104 0.896 9 C 0.041 3.959 10 O -0.363 6.363 11 C 0.043 3.957 12 C 0.128 3.872 13 N -0.602 5.602 14 C -0.218 4.218 15 H 0.083 0.917 16 C -0.006 4.006 17 N -0.918 5.918 18 Si 0.914 3.086 19 H -0.287 1.287 20 H -0.290 1.290 21 H -0.281 1.281 22 C 0.147 3.853 23 C -0.114 4.114 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.097 0.903 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.403 0.597 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.043 0.957 35 H 0.041 0.959 36 H 0.255 0.745 37 H 0.032 0.968 38 H 0.074 0.926 39 H 0.095 0.905 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.144 4.435 -10.138 17.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.137 4.137 3 C -0.203 4.203 4 C 0.302 3.698 5 O -0.422 6.422 6 N -0.364 5.364 7 C 0.001 3.999 8 H 0.122 0.878 9 C -0.037 4.037 10 O -0.281 6.281 11 C 0.002 3.998 12 C 0.002 3.998 13 N -0.330 5.330 14 C -0.345 4.345 15 H 0.101 0.899 16 C -0.203 4.203 17 N -0.565 5.565 18 Si 0.744 3.256 19 H -0.215 1.215 20 H -0.216 1.216 21 H -0.206 1.206 22 C 0.021 3.979 23 C -0.152 4.152 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.115 0.885 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.238 0.762 32 H 0.087 0.913 33 H 0.104 0.896 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.050 0.950 38 H 0.092 0.908 39 H 0.114 0.886 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -14.379 4.053 -9.471 17.689 hybrid contribution 1.236 0.541 0.249 1.372 sum -13.143 4.595 -9.222 16.701 Atomic orbital electron populations 1.21601 0.92580 1.02769 1.01970 1.21314 0.98303 0.97359 0.96757 1.21795 1.01434 0.94147 1.02875 1.20720 0.82186 0.79305 0.87587 1.90686 1.55374 1.49092 1.47072 1.46008 1.06992 1.58082 1.25290 1.22627 0.96467 0.92635 0.88199 0.87789 1.23881 0.86142 0.95130 0.98537 1.88749 1.22350 1.60377 1.56581 1.23906 0.90468 0.89488 0.95937 1.22423 0.88721 0.97557 0.91120 1.45300 1.35378 1.39582 1.12700 1.18884 1.04846 1.13131 0.97667 0.89949 1.24810 0.99710 0.98869 0.96906 1.69831 1.42411 1.32650 1.11565 0.86090 0.81835 0.78793 0.78846 1.21451 1.21582 1.20612 1.22519 0.85818 0.91483 0.98047 1.22661 0.90552 0.98958 1.03040 0.91973 0.92172 0.92000 0.88490 0.91954 0.91447 0.92022 0.76248 0.91250 0.89555 0.93898 0.94191 0.93537 0.95014 0.90792 0.88618 0.89979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.16 8.48 37.16 0.32 -0.84 16 2 C -0.12 -1.03 3.26 -91.77 -0.30 -1.33 16 3 C -0.14 -1.07 9.09 37.16 0.34 -0.74 16 4 C 0.52 6.45 7.15 -10.99 -0.08 6.37 16 5 O -0.55 -8.77 15.62 5.55 0.09 -8.69 16 6 N -0.71 -8.65 5.04 -51.72 -0.26 -8.91 16 7 C 0.11 1.50 3.51 -65.77 -0.23 1.27 16 8 H 0.10 1.51 7.54 -51.93 -0.39 1.12 16 9 C 0.04 0.62 7.42 38.25 0.28 0.90 16 10 O -0.36 -6.50 11.32 -35.23 -0.40 -6.90 16 11 C 0.04 0.81 1.66 -90.68 -0.15 0.66 16 12 C 0.13 2.64 8.20 -8.03 -0.07 2.58 16 13 N -0.60 -15.27 3.74 -184.61 -0.69 -15.96 16 14 C -0.22 -6.01 10.74 -15.06 -0.16 -6.18 16 15 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 16 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 17 N -0.92 -26.91 11.51 55.49 0.64 -26.27 16 18 Si 0.91 21.77 29.55 -169.99 -5.02 16.75 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 C 0.15 3.51 6.92 -7.90 -0.05 3.45 16 23 C -0.11 -1.86 6.11 -25.50 -0.16 -2.01 16 24 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 27 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.44 7.56 -51.93 -0.39 0.04 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.40 4.25 8.04 -40.82 -0.33 3.92 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.04 0.80 7.91 -51.93 -0.41 0.39 16 35 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 37 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.07 1.91 6.93 -51.93 -0.36 1.55 16 39 H 0.10 1.69 7.82 -51.93 -0.41 1.28 16 40 H 0.08 1.27 7.70 -51.93 -0.40 0.87 16 LS Contribution 327.14 15.07 4.93 4.93 Total: -1.00 -31.99 327.14 -7.53 -39.52 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -6.46 Total: 1.65 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: -0.36 Total: 3.87 kcal Atomic # 7 Polarization: -50.83 SS G_CDS: -0.31 Total: -51.14 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: -0.31 Total: -15.58 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.99 -7.53 -39.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053743795.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.216 kcal (2) G-P(sol) polarization free energy of solvation -31.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds