Wall clock time and date at job start Mon Mar 30 2020 01:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47068 * 2 1 4 4 C 1.50697 * 109.47136 * 179.97438 * 3 2 1 5 5 O 1.21285 * 120.00032 * 0.02562 * 4 3 2 6 6 N 1.34785 * 120.00073 * 179.97438 * 4 3 2 7 7 C 1.44952 * 117.32300 * 356.40336 * 6 4 3 8 8 C 1.52644 * 111.49768 * 205.35766 * 7 6 4 9 9 O 1.41315 * 111.21733 * 318.20164 * 8 7 6 10 10 C 1.40791 * 118.40219 * 57.49449 * 9 8 7 11 11 H 1.09005 * 109.35098 * 188.31881 * 10 9 8 12 12 C 1.51583 * 109.26473 * 68.65218 * 10 9 8 13 13 N 1.46878 * 106.20223 * 210.26813 * 12 10 9 14 14 C 1.36939 * 125.36476 * 197.62704 * 13 12 10 15 15 H 1.07994 * 120.00139 * 169.29791 * 14 13 12 16 16 C 1.38814 * 119.99732 * 349.29419 * 14 13 12 17 17 N 1.31619 * 120.00109 * 350.24832 * 16 14 13 18 18 Si 1.86806 * 119.99686 * 170.24520 * 16 14 13 19 19 H 1.48496 * 109.46959 * 84.93043 * 18 16 14 20 20 H 1.48501 * 109.47017 * 204.92460 * 18 16 14 21 21 H 1.48493 * 109.47002 * 324.92780 * 18 16 14 22 22 C 1.46780 * 109.26943 * 17.64015 * 13 12 10 23 23 C 1.44538 * 117.32202 * 176.65634 * 6 4 3 24 24 H 1.08999 * 109.49363 * 285.85884 * 23 6 4 25 25 H 1.09000 * 109.46675 * 60.00407 * 1 2 3 26 26 H 1.08997 * 109.46964 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47062 * 300.00490 * 1 2 3 28 28 H 1.09001 * 109.47169 * 119.99411 * 2 1 3 29 29 H 1.08998 * 109.47549 * 239.99705 * 2 1 3 30 30 H 1.09000 * 109.47040 * 299.99369 * 3 2 1 31 31 H 1.08997 * 109.47579 * 59.99827 * 3 2 1 32 32 H 1.09006 * 108.99865 * 324.32714 * 7 6 4 33 33 H 1.09002 * 109.00382 * 83.08536 * 7 6 4 34 34 H 1.09003 * 108.78650 * 198.05448 * 8 7 6 35 35 H 1.09005 * 109.67383 * 78.92859 * 8 7 6 36 36 H 1.09000 * 110.33341 * 91.00482 * 12 10 9 37 37 H 1.09004 * 109.99951 * 329.34604 * 12 10 9 38 38 H 0.97004 * 119.99516 * 180.02562 * 17 16 14 39 39 H 1.08998 * 109.82984 * 239.35867 * 22 13 12 40 40 H 1.09001 * 109.89920 * 118.43915 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 8 4.1534 0.3922 0.0006 6 7 4.2209 2.6098 0.0002 7 6 3.4405 3.8286 -0.0816 8 6 4.2519 4.9730 -0.6832 9 8 5.5705 4.9875 -0.1750 10 6 6.3635 3.8356 -0.3374 11 1 7.2868 3.9497 0.2306 12 6 6.6954 3.6599 -1.8060 13 7 6.8319 2.2140 -2.0252 14 6 7.4492 1.6300 -3.0990 15 1 7.6542 0.5697 -3.0931 16 6 7.8115 2.4009 -4.1951 17 7 7.3956 3.6460 -4.2903 18 14 8.8895 1.6711 -5.5349 19 1 8.0409 0.9382 -6.5085 20 1 9.6163 2.7612 -6.2341 21 1 9.8680 0.7339 -4.9273 22 6 6.2020 1.4938 -0.9122 23 6 5.6628 2.5434 0.0758 24 1 5.9620 2.2757 1.0891 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8934 -0.5137 0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 2.5783 3.6553 -0.7256 33 1 3.0891 4.0927 0.9158 34 1 3.7648 5.9164 -0.4364 35 1 4.2894 4.8660 -1.7674 36 1 7.6313 4.1647 -2.0458 37 1 5.8876 4.0568 -2.4209 38 1 7.6485 4.1845 -5.0565 39 1 6.9393 0.8630 -0.4156 40 1 5.3815 0.8803 -1.2843 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082979726.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:45 Heat of formation + Delta-G solvation = -39.619825 kcal Electronic energy + Delta-G solvation = -22025.355814 eV Core-core repulsion = 18841.508179 eV Total energy + Delta-G solvation = -3183.847635 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.80309 -38.52317 -35.96506 -34.81961 -34.37279 -32.33292 -29.97904 -28.68206 -27.90882 -26.71985 -24.52583 -23.32853 -22.14282 -20.63342 -19.77129 -18.42528 -17.44586 -16.87555 -16.47990 -15.94438 -15.25478 -15.11910 -14.62736 -14.50484 -14.18788 -13.93034 -13.42085 -13.17598 -12.76693 -12.63133 -12.23725 -12.11022 -11.85867 -11.65106 -11.43021 -11.11908 -11.00687 -10.89185 -10.75216 -10.66491 -10.54865 -10.32531 -10.11663 -9.70716 -9.33197 -8.91454 -8.56358 -8.20994 -6.73271 -5.72076 -3.04653 2.84874 3.12728 3.42139 3.47185 3.49821 4.09079 4.50596 4.58669 4.83532 4.88784 4.94381 5.09094 5.16380 5.30928 5.38709 5.41328 5.45002 5.57255 5.58902 5.64214 5.73069 5.79570 5.85904 5.96238 5.97163 6.12594 6.13137 6.27965 6.30565 6.62140 6.86691 7.21027 7.39865 7.46897 7.54216 7.76191 7.87222 8.27247 8.44876 9.22484 9.84300 10.49270 11.40876 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.019631 B = 0.006316 C = 0.005350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.941009 B = 4432.463174 C = 5232.657751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.110 4.110 3 C -0.139 4.139 4 C 0.503 3.497 5 O -0.526 6.526 6 N -0.591 5.591 7 C 0.079 3.921 8 C 0.057 3.943 9 O -0.373 6.373 10 C 0.072 3.928 11 H 0.111 0.889 12 C 0.149 3.851 13 N -0.602 5.602 14 C -0.226 4.226 15 H 0.077 0.923 16 C -0.007 4.007 17 N -0.920 5.920 18 Si 0.911 3.089 19 H -0.288 1.288 20 H -0.290 1.290 21 H -0.281 1.281 22 C 0.122 3.878 23 C 0.113 3.887 24 H 0.071 0.929 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.102 0.898 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.040 0.960 38 H 0.252 0.748 39 H 0.031 0.969 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.476 1.208 10.224 16.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.148 4.148 3 C -0.179 4.179 4 C 0.291 3.709 5 O -0.402 6.402 6 N -0.325 5.325 7 C -0.045 4.045 8 C -0.020 4.020 9 O -0.290 6.290 10 C 0.013 3.987 11 H 0.128 0.872 12 C 0.024 3.976 13 N -0.330 5.330 14 C -0.354 4.354 15 H 0.094 0.906 16 C -0.204 4.204 17 N -0.568 5.568 18 Si 0.741 3.259 19 H -0.216 1.216 20 H -0.216 1.216 21 H -0.207 1.207 22 C -0.004 4.004 23 C 0.009 3.991 24 H 0.089 0.911 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.109 0.891 31 H 0.108 0.892 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.120 0.880 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.058 0.942 38 H 0.062 0.938 39 H 0.049 0.951 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.968 0.922 10.127 15.705 hybrid contribution 0.394 -0.393 -0.963 1.112 sum -11.574 0.530 9.165 14.772 Atomic orbital electron populations 1.21786 0.95706 1.01771 1.01604 1.21285 0.94978 0.94892 1.03644 1.21771 0.92270 0.99966 1.03874 1.20771 0.90222 0.83477 0.76382 1.90671 1.69923 1.31317 1.48300 1.46748 1.06201 1.06143 1.73457 1.21781 0.95046 0.86300 1.01370 1.22392 0.83102 0.97515 0.99029 1.86843 1.24160 1.37492 1.80550 1.22506 0.92569 0.82897 1.00714 0.87181 1.21234 1.01358 0.86334 0.88680 1.44279 1.65878 1.00783 1.22047 1.19007 1.30064 0.93383 0.92990 0.90559 1.24821 1.01308 0.96562 0.97688 1.69963 1.48208 1.07986 1.30598 0.86159 0.80282 0.77790 0.81673 1.21553 1.21603 1.20675 1.21820 0.96435 0.93356 0.88750 1.21535 0.79277 0.98529 0.99776 0.91122 0.92717 0.92543 0.92867 0.91329 0.91093 0.89075 0.89222 0.90208 0.91515 0.88024 0.91874 0.91891 0.94223 0.93766 0.95074 0.91908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.91 37.16 0.37 -0.94 16 2 C -0.11 -1.26 5.22 -26.73 -0.14 -1.40 16 3 C -0.14 -1.61 4.27 -27.88 -0.12 -1.73 16 4 C 0.50 8.31 7.05 -10.98 -0.08 8.24 16 5 O -0.53 -10.57 13.00 5.55 0.07 -10.50 16 6 N -0.59 -9.83 3.08 -168.60 -0.52 -10.35 16 7 C 0.08 1.01 5.90 -5.05 -0.03 0.98 16 8 C 0.06 0.82 6.76 36.97 0.25 1.07 16 9 O -0.37 -6.65 10.20 -34.36 -0.35 -7.00 16 10 C 0.07 1.42 3.80 -27.61 -0.10 1.32 16 11 H 0.11 2.04 8.14 -51.93 -0.42 1.62 16 12 C 0.15 3.69 4.88 -4.55 -0.02 3.67 16 13 N -0.60 -16.08 3.39 -173.00 -0.59 -16.67 16 14 C -0.23 -6.56 10.21 -15.06 -0.15 -6.72 16 15 H 0.08 2.18 7.85 -52.49 -0.41 1.76 16 16 C -0.01 -0.21 5.40 -17.43 -0.09 -0.31 16 17 N -0.92 -27.43 10.67 55.49 0.59 -26.83 16 18 Si 0.91 22.59 29.57 -169.99 -5.03 17.57 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 C 0.12 2.84 6.05 -3.42 -0.02 2.82 16 23 C 0.11 2.17 3.41 -68.67 -0.23 1.94 16 24 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 29 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 30 H 0.09 0.95 7.11 -51.93 -0.37 0.58 16 31 H 0.09 0.82 8.09 -51.93 -0.42 0.40 16 32 H 0.08 0.85 6.33 -51.93 -0.33 0.52 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.06 1.06 6.67 -51.93 -0.35 0.71 16 36 H 0.06 1.72 7.34 -51.93 -0.38 1.34 16 37 H 0.04 1.07 5.97 -51.93 -0.31 0.76 16 38 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 39 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.06 1.58 5.18 -51.93 -0.27 1.31 16 LS Contribution 308.28 15.07 4.65 4.65 Total: -1.00 -33.35 308.28 -7.74 -41.10 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -6.19 Total: -0.89 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: -0.38 Total: 8.93 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: -0.51 Total: -53.85 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: -0.28 Total: -17.50 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.03 Total: 17.57 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -33.35 -7.74 -41.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082979726.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.478 kcal (2) G-P(sol) polarization free energy of solvation -33.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds