Wall clock time and date at job start Mon Mar 30 2020 01:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47068 * 2 1 4 4 C 1.50697 * 109.47136 * 179.97438 * 3 2 1 5 5 O 1.21285 * 120.00032 * 0.02562 * 4 3 2 6 6 N 1.34785 * 120.00073 * 179.97438 * 4 3 2 7 7 C 1.44952 * 117.32300 * 356.40336 * 6 4 3 8 8 C 1.52644 * 111.49768 * 205.35766 * 7 6 4 9 9 O 1.41315 * 111.21733 * 318.20164 * 8 7 6 10 10 C 1.40791 * 118.40219 * 57.49449 * 9 8 7 11 11 H 1.09005 * 109.35098 * 188.31881 * 10 9 8 12 12 C 1.51583 * 109.26473 * 68.65218 * 10 9 8 13 13 N 1.46878 * 106.20223 * 210.26813 * 12 10 9 14 14 C 1.36939 * 125.36476 * 197.62704 * 13 12 10 15 15 H 1.07994 * 120.00139 * 169.29791 * 14 13 12 16 16 C 1.38814 * 119.99732 * 349.29419 * 14 13 12 17 17 N 1.31619 * 120.00109 * 350.24832 * 16 14 13 18 18 Si 1.86806 * 119.99686 * 170.24520 * 16 14 13 19 19 H 1.48496 * 109.46959 * 84.93043 * 18 16 14 20 20 H 1.48501 * 109.47017 * 204.92460 * 18 16 14 21 21 H 1.48493 * 109.47002 * 324.92780 * 18 16 14 22 22 C 1.46780 * 109.26943 * 17.64015 * 13 12 10 23 23 C 1.44538 * 117.32202 * 176.65634 * 6 4 3 24 24 H 1.08999 * 109.49363 * 285.85884 * 23 6 4 25 25 H 1.09000 * 109.46675 * 60.00407 * 1 2 3 26 26 H 1.08997 * 109.46964 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47062 * 300.00490 * 1 2 3 28 28 H 1.09001 * 109.47169 * 119.99411 * 2 1 3 29 29 H 1.08998 * 109.47549 * 239.99705 * 2 1 3 30 30 H 1.09000 * 109.47040 * 299.99369 * 3 2 1 31 31 H 1.08997 * 109.47579 * 59.99827 * 3 2 1 32 32 H 1.09006 * 108.99865 * 324.32714 * 7 6 4 33 33 H 1.09002 * 109.00382 * 83.08536 * 7 6 4 34 34 H 1.09003 * 108.78650 * 198.05448 * 8 7 6 35 35 H 1.09005 * 109.67383 * 78.92859 * 8 7 6 36 36 H 1.09000 * 110.33341 * 91.00482 * 12 10 9 37 37 H 1.09004 * 109.99951 * 329.34604 * 12 10 9 38 38 H 0.97004 * 119.99516 * 180.02562 * 17 16 14 39 39 H 1.08998 * 109.82984 * 239.35867 * 22 13 12 40 40 H 1.09001 * 109.89920 * 118.43915 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 8 4.1534 0.3922 0.0006 6 7 4.2209 2.6098 0.0002 7 6 3.4405 3.8286 -0.0816 8 6 4.2519 4.9730 -0.6832 9 8 5.5705 4.9875 -0.1750 10 6 6.3635 3.8356 -0.3374 11 1 7.2868 3.9497 0.2306 12 6 6.6954 3.6599 -1.8060 13 7 6.8319 2.2140 -2.0252 14 6 7.4492 1.6300 -3.0990 15 1 7.6542 0.5697 -3.0931 16 6 7.8115 2.4009 -4.1951 17 7 7.3956 3.6460 -4.2903 18 14 8.8895 1.6711 -5.5349 19 1 8.0409 0.9382 -6.5085 20 1 9.6163 2.7612 -6.2341 21 1 9.8680 0.7339 -4.9273 22 6 6.2020 1.4938 -0.9122 23 6 5.6628 2.5434 0.0758 24 1 5.9620 2.2757 1.0891 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8934 -0.5137 0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 2.5783 3.6553 -0.7256 33 1 3.0891 4.0927 0.9158 34 1 3.7648 5.9164 -0.4364 35 1 4.2894 4.8660 -1.7674 36 1 7.6313 4.1647 -2.0458 37 1 5.8876 4.0568 -2.4209 38 1 7.6485 4.1845 -5.0565 39 1 6.9393 0.8630 -0.4156 40 1 5.3815 0.8803 -1.2843 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082979726.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:45 Heat of formation + Delta-G solvation = -63.161346 kcal Electronic energy + Delta-G solvation = -22026.376651 eV Core-core repulsion = 18841.508179 eV Total energy + Delta-G solvation = -3184.868472 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.20380 -39.92197 -37.69659 -36.15549 -35.39214 -34.25751 -31.69785 -29.88918 -29.59850 -28.10992 -26.41290 -24.70028 -23.35440 -22.19365 -21.21993 -19.83317 -19.14253 -18.26545 -18.16288 -17.14843 -16.87086 -16.50715 -16.29229 -15.77344 -15.54367 -15.39802 -15.04504 -14.54337 -14.07314 -13.99289 -13.92796 -13.56490 -13.05699 -12.91129 -12.86218 -12.72760 -12.62960 -12.39366 -12.20705 -12.15342 -11.98312 -11.90651 -11.64659 -11.55739 -10.84238 -10.73706 -10.37317 -9.56613 -8.89280 -7.94205 -5.30460 1.41575 1.43929 1.53310 1.60402 1.87776 2.44553 2.74748 3.24162 3.33541 3.61718 3.70871 3.80774 3.94923 4.00591 4.07267 4.11878 4.26424 4.37878 4.40432 4.49428 4.58325 4.70839 4.72591 4.79210 4.88227 4.93063 5.01730 5.07712 5.24927 5.29991 5.32201 5.44063 5.47938 5.56633 5.64291 6.12161 6.27392 6.42483 7.01807 7.18553 7.68702 8.32276 9.16865 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.019631 B = 0.006316 C = 0.005350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.941009 B = 4432.463174 C = 5232.657751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.110 4.110 3 C -0.128 4.128 4 C 0.492 3.508 5 O -0.572 6.572 6 N -0.598 5.598 7 C 0.074 3.926 8 C 0.047 3.953 9 O -0.376 6.376 10 C 0.089 3.911 11 H 0.122 0.878 12 C 0.162 3.838 13 N -0.620 5.620 14 C -0.252 4.252 15 H 0.072 0.928 16 C -0.057 4.057 17 N -0.945 5.945 18 Si 0.980 3.020 19 H -0.283 1.283 20 H -0.287 1.287 21 H -0.272 1.272 22 C 0.123 3.877 23 C 0.125 3.875 24 H 0.088 0.912 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.071 0.929 28 H 0.056 0.944 29 H 0.041 0.959 30 H 0.109 0.891 31 H 0.128 0.872 32 H 0.106 0.894 33 H 0.108 0.892 34 H 0.147 0.853 35 H 0.030 0.970 36 H 0.026 0.974 37 H 0.012 0.988 38 H 0.250 0.750 39 H 0.022 0.978 40 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.436 2.055 11.424 18.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.148 4.148 3 C -0.167 4.167 4 C 0.283 3.717 5 O -0.452 6.452 6 N -0.332 5.332 7 C -0.047 4.047 8 C -0.029 4.029 9 O -0.293 6.293 10 C 0.029 3.971 11 H 0.140 0.860 12 C 0.037 3.963 13 N -0.348 5.348 14 C -0.381 4.381 15 H 0.089 0.911 16 C -0.251 4.251 17 N -0.593 5.593 18 Si 0.807 3.193 19 H -0.210 1.210 20 H -0.213 1.213 21 H -0.197 1.197 22 C -0.003 4.003 23 C 0.019 3.981 24 H 0.106 0.894 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.090 0.910 28 H 0.075 0.925 29 H 0.060 0.940 30 H 0.127 0.873 31 H 0.146 0.854 32 H 0.124 0.876 33 H 0.126 0.874 34 H 0.165 0.835 35 H 0.049 0.951 36 H 0.045 0.955 37 H 0.030 0.970 38 H 0.059 0.941 39 H 0.040 0.960 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -13.965 1.788 11.347 18.082 hybrid contribution 0.963 -0.655 -1.362 1.792 sum -13.002 1.133 9.985 16.433 Atomic orbital electron populations 1.21734 0.93078 1.02429 1.02887 1.21268 0.97130 0.94700 1.01734 1.21836 0.88056 1.00442 1.06380 1.21753 0.92317 0.82620 0.75005 1.90649 1.71264 1.32951 1.50359 1.46949 1.05139 1.07871 1.73235 1.22125 0.94688 0.83774 1.04151 1.22739 0.82079 1.00768 0.97308 1.86848 1.25769 1.36306 1.80331 1.22180 0.93840 0.84090 0.96960 0.86016 1.21007 0.98491 0.84887 0.91954 1.44554 1.65979 1.01999 1.22291 1.19318 1.30938 0.93578 0.94287 0.91061 1.25667 1.02470 0.97025 0.99897 1.70156 1.48949 1.09081 1.31069 0.85101 0.78473 0.77138 0.78610 1.20989 1.21270 1.19722 1.21836 0.95435 0.94293 0.88697 1.21253 0.81393 0.96378 0.99049 0.89439 0.91955 0.92347 0.90954 0.92483 0.93993 0.87295 0.85443 0.87582 0.87442 0.83498 0.95130 0.95519 0.96991 0.94065 0.95964 0.93850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.91 71.98 0.71 -1.37 16 2 C -0.11 -2.37 5.22 30.60 0.16 -2.21 16 3 C -0.13 -2.57 4.27 29.85 0.13 -2.44 16 4 C 0.49 15.65 7.05 87.65 0.62 16.26 16 5 O -0.57 -23.43 13.00 -3.04 -0.04 -23.47 16 6 N -0.60 -18.78 3.08 -805.71 -2.49 -21.27 16 7 C 0.07 1.62 5.90 86.55 0.51 2.13 16 8 C 0.05 1.26 6.76 71.86 0.49 1.74 16 9 O -0.38 -12.77 10.20 -145.87 -1.49 -14.26 16 10 C 0.09 3.48 3.80 30.03 0.11 3.60 16 11 H 0.12 4.46 8.14 -2.38 -0.02 4.44 16 12 C 0.16 8.31 4.88 85.84 0.42 8.73 16 13 N -0.62 -34.48 3.39 -701.26 -2.37 -36.86 16 14 C -0.25 -15.19 10.21 84.03 0.86 -14.33 16 15 H 0.07 4.23 7.85 -2.91 -0.02 4.20 16 16 C -0.06 -3.35 5.40 84.86 0.46 -2.89 16 17 N -0.94 -58.07 10.67 21.65 0.23 -57.84 16 18 Si 0.98 47.33 29.57 68.60 2.03 49.36 16 19 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 20 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 21 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 22 C 0.12 5.90 6.05 86.63 0.52 6.43 16 23 C 0.12 4.73 3.41 45.56 0.16 4.89 16 24 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 25 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.06 1.34 8.10 -2.39 -0.02 1.32 16 29 H 0.04 1.12 8.10 -2.39 -0.02 1.10 16 30 H 0.11 1.85 7.11 -2.39 -0.02 1.83 16 31 H 0.13 1.65 8.09 -2.39 -0.02 1.63 16 32 H 0.11 1.78 6.33 -2.38 -0.02 1.76 16 33 H 0.11 1.58 8.14 -2.39 -0.02 1.57 16 34 H 0.15 2.56 8.14 -2.39 -0.02 2.54 16 35 H 0.03 1.01 6.67 -2.38 -0.02 1.00 16 36 H 0.03 1.53 7.34 -2.39 -0.02 1.51 16 37 H 0.01 0.68 5.97 -2.38 -0.01 0.67 16 38 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 39 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.04 2.29 5.18 -2.39 -0.01 2.28 16 Total: -1.00 -77.00 308.28 2.04 -74.96 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: 1.02 Total: 8.84 kcal Atomic # 6 Polarization: 15.39 SS G_CDS: 5.14 Total: 20.53 kcal Atomic # 7 Polarization: -111.33 SS G_CDS: -4.63 Total: -115.96 kcal Atomic # 8 Polarization: -36.20 SS G_CDS: -1.53 Total: -37.73 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 2.03 Total: 49.36 kcal Total: -77.00 2.04 -74.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082979726.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.797 kcal (2) G-P(sol) polarization free energy of solvation -76.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds