Wall clock time and date at job start Mon Mar 30 2020 01:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47303 * 2 1 4 4 H 1.08995 * 115.54940 * 29.27297 * 3 2 1 5 5 C 1.53002 * 117.49900 * 243.60713 * 3 2 1 6 6 C 1.53000 * 60.00118 * 252.50991 * 5 3 2 7 7 H 1.09001 * 117.49539 * 107.48640 * 6 5 3 8 8 C 1.50693 * 117.49631 * 252.50980 * 6 5 3 9 9 O 1.21278 * 120.00254 * 68.62660 * 8 6 5 10 10 N 1.34778 * 120.00205 * 248.61734 * 8 6 5 11 11 C 1.46500 * 120.00300 * 180.02562 * 10 8 6 12 12 H 1.08998 * 110.88086 * 31.12429 * 11 10 8 13 13 C 1.54902 * 111.00673 * 267.20059 * 11 10 8 14 14 N 1.47429 * 104.83152 * 204.91612 * 13 11 10 15 15 C 1.36934 * 125.64361 * 204.14895 * 14 13 11 16 16 H 1.07999 * 120.00446 * 354.84629 * 15 14 13 17 17 C 1.38813 * 119.99714 * 174.85043 * 15 14 13 18 18 N 1.31622 * 120.00052 * 7.05960 * 17 15 14 19 19 Si 1.86796 * 120.00120 * 187.06234 * 17 15 14 20 20 H 1.48501 * 109.47310 * 94.98792 * 19 17 15 21 21 H 1.48501 * 109.47201 * 214.98521 * 19 17 15 22 22 H 1.48495 * 109.47248 * 334.98609 * 19 17 15 23 23 C 1.47018 * 108.70160 * 24.13069 * 14 13 11 24 24 C 1.54324 * 107.27275 * 358.93908 * 23 14 13 25 25 H 1.09003 * 110.71778 * 219.44251 * 24 23 14 26 26 O 1.42894 * 110.87104 * 96.24727 * 24 23 14 27 27 H 1.08991 * 109.47159 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46901 * 300.00454 * 1 2 3 29 29 H 1.09006 * 109.46867 * 59.99928 * 1 2 3 30 30 H 1.09005 * 109.47347 * 239.99850 * 2 1 3 31 31 H 1.08993 * 109.47013 * 120.00341 * 2 1 3 32 32 H 1.09003 * 117.49926 * 0.02562 * 5 3 2 33 33 H 1.08997 * 117.49940 * 145.01953 * 5 3 2 34 34 H 0.97003 * 119.99784 * 0.02562 * 10 8 6 35 35 H 1.08999 * 110.36646 * 323.75623 * 13 11 10 36 36 H 1.08996 * 110.36681 * 86.07396 * 13 11 10 37 37 H 0.96996 * 120.00258 * 180.02562 * 18 17 15 38 38 H 1.09004 * 109.87734 * 239.52020 * 23 14 13 39 39 H 1.08997 * 109.88182 * 118.35627 * 23 14 13 40 40 H 0.96697 * 114.00588 * 66.39104 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.3881 2.1716 0.4808 5 6 2.8444 1.9074 -1.2157 6 6 3.5502 1.6579 0.1186 7 1 4.1803 0.7718 0.1966 8 6 4.0227 2.8620 0.8916 9 8 3.2156 3.6167 1.3915 10 7 5.3423 3.1002 1.0278 11 6 5.8017 4.2706 1.7798 12 1 5.1018 4.5189 2.5777 13 6 6.0261 5.4814 0.8401 14 7 7.0127 6.3243 1.5397 15 6 7.1810 7.6715 1.3609 16 1 6.6183 8.1895 0.5985 17 6 8.0749 8.3713 2.1597 18 7 8.8610 7.7222 2.9923 19 14 8.1622 10.2341 2.0532 20 1 7.3019 10.8311 3.1062 21 1 9.5659 10.6761 2.2514 22 1 7.6880 10.6763 0.7172 23 6 7.7857 5.4790 2.4614 24 6 7.2296 4.0443 2.3428 25 1 7.1871 3.5652 3.3210 26 8 8.0139 3.2677 1.4353 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.0098 1.1858 -2.0157 33 1 2.7218 2.9425 -1.5343 34 1 5.9878 2.4967 0.6278 35 1 6.4234 5.1488 -0.1189 36 1 5.0941 6.0280 0.6964 37 1 9.4854 8.2112 3.5508 38 1 7.6666 5.8396 3.4831 39 1 8.8391 5.4926 2.1817 40 1 8.9156 3.0978 1.7404 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083791046.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:42 Heat of formation + Delta-G solvation = -42.712480 kcal Electronic energy + Delta-G solvation = -20675.471290 eV Core-core repulsion = 17491.489547 eV Total energy + Delta-G solvation = -3183.981743 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.94778 -38.27741 -36.82628 -34.83563 -33.87822 -32.24695 -31.58635 -28.55729 -27.20721 -24.95129 -24.09356 -23.48763 -20.80802 -20.48963 -20.06537 -19.73789 -17.54572 -16.86226 -16.77046 -15.47533 -14.97485 -14.87890 -14.72599 -14.29739 -14.18776 -13.92801 -13.15690 -12.88333 -12.72808 -12.58826 -12.44201 -12.26998 -12.17136 -11.50913 -11.29466 -11.20023 -10.94754 -10.85938 -10.52729 -10.48183 -10.35389 -10.15015 -10.10002 -9.82966 -9.58574 -9.29295 -8.66082 -8.60168 -6.87044 -5.76062 -3.07765 2.68547 3.30893 3.40750 3.46076 3.47743 3.79947 4.43813 4.52701 4.61299 4.67065 4.78221 5.00820 5.12751 5.16423 5.26767 5.31266 5.39149 5.52006 5.52319 5.64409 5.72385 5.74789 5.83553 5.89110 5.92862 5.94956 6.10508 6.23094 6.24032 6.63968 6.67550 6.96169 7.33607 7.44285 7.73210 7.87974 8.07802 8.19905 8.52937 9.17699 9.78077 10.43194 11.36637 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.034497 B = 0.003823 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.467606 B = 7322.452040 C = 7809.427238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.094 4.094 3 C -0.120 4.120 4 H 0.118 0.882 5 C -0.149 4.149 6 C -0.188 4.188 7 H 0.121 0.879 8 C 0.538 3.462 9 O -0.546 6.546 10 N -0.704 5.704 11 C 0.138 3.862 12 H 0.104 0.896 13 C 0.132 3.868 14 N -0.601 5.601 15 C -0.225 4.225 16 H 0.080 0.920 17 C -0.009 4.009 18 N -0.925 5.925 19 Si 0.913 3.087 20 H -0.288 1.288 21 H -0.291 1.291 22 H -0.280 1.280 23 C 0.154 3.846 24 C 0.068 3.932 25 H 0.060 0.940 26 O -0.568 6.568 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.407 0.593 35 H 0.025 0.975 36 H 0.043 0.957 37 H 0.253 0.747 38 H 0.057 0.943 39 H 0.051 0.949 40 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.760 -16.705 -4.968 19.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.132 4.132 3 C -0.139 4.139 4 H 0.136 0.864 5 C -0.186 4.186 6 C -0.209 4.209 7 H 0.139 0.861 8 C 0.324 3.676 9 O -0.424 6.424 10 N -0.354 5.354 11 C 0.032 3.968 12 H 0.122 0.878 13 C 0.004 3.996 14 N -0.328 5.328 15 C -0.353 4.353 16 H 0.097 0.903 17 C -0.204 4.204 18 N -0.572 5.572 19 Si 0.744 3.256 20 H -0.215 1.215 21 H -0.218 1.218 22 H -0.206 1.206 23 C 0.028 3.972 24 C 0.008 3.992 25 H 0.078 0.922 26 O -0.374 6.374 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.120 0.880 33 H 0.118 0.882 34 H 0.243 0.757 35 H 0.043 0.957 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -9.738 -15.955 -4.860 19.313 hybrid contribution 1.171 0.748 0.196 1.403 sum -8.567 -15.207 -4.664 18.066 Atomic orbital electron populations 1.21740 0.95266 1.01480 1.02207 1.21148 0.96200 0.93786 1.02026 1.22468 0.91619 0.98526 1.01289 0.86428 1.23091 1.02058 1.03212 0.90281 1.22293 0.97432 0.99090 1.02079 0.86112 1.19660 0.82538 0.85465 0.79975 1.90691 1.53980 1.48855 1.48851 1.45703 1.06572 1.28120 1.55014 1.22348 0.93355 0.85807 0.95276 0.87795 1.21831 0.93199 0.90421 0.94114 1.44284 1.37794 1.04360 1.46326 1.19099 1.20136 0.81563 1.14535 0.90253 1.24813 0.98649 0.98285 0.98698 1.69928 1.25404 1.33601 1.28313 0.86069 0.76881 0.85013 0.77669 1.21542 1.21770 1.20584 1.21869 0.95455 0.84388 0.95483 1.23506 0.90676 0.94103 0.90918 0.92206 1.86244 1.28047 1.74271 1.48809 0.92747 0.92462 0.92531 0.91743 0.91490 0.87955 0.88215 0.75749 0.95697 0.93822 0.93720 0.92502 0.93093 0.77326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.87 37.16 0.37 -0.75 16 2 C -0.09 -0.77 6.22 -26.73 -0.17 -0.93 16 3 C -0.12 -1.28 5.25 -90.62 -0.48 -1.76 16 4 H 0.12 1.49 7.60 -51.93 -0.39 1.09 16 5 C -0.15 -1.52 9.88 -26.73 -0.26 -1.78 16 6 C -0.19 -2.18 5.91 -91.77 -0.54 -2.72 16 7 H 0.12 1.13 8.14 -51.93 -0.42 0.71 16 8 C 0.54 8.58 7.61 -10.99 -0.08 8.50 16 9 O -0.55 -10.83 15.90 5.56 0.09 -10.74 16 10 N -0.70 -11.18 5.17 -51.74 -0.27 -11.44 16 11 C 0.14 2.64 3.31 -65.79 -0.22 2.42 16 12 H 0.10 2.14 7.54 -51.93 -0.39 1.75 16 13 C 0.13 2.96 6.92 -2.53 -0.02 2.94 16 14 N -0.60 -15.71 3.39 -170.08 -0.58 -16.29 16 15 C -0.23 -6.42 10.27 -15.06 -0.15 -6.57 16 16 H 0.08 2.21 7.84 -52.49 -0.41 1.80 16 17 C -0.01 -0.24 5.48 -17.43 -0.10 -0.34 16 18 N -0.92 -26.95 10.36 55.49 0.57 -26.37 16 19 Si 0.91 22.34 29.56 -169.99 -5.02 17.32 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 C 0.15 3.64 5.15 -3.07 -0.02 3.63 16 24 C 0.07 1.24 4.19 -24.90 -0.10 1.14 16 25 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 26 O -0.57 -9.11 12.15 -35.23 -0.43 -9.54 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.45 7.88 -51.93 -0.41 0.04 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.10 0.81 8.03 -51.93 -0.42 0.39 16 33 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.41 5.72 7.58 -40.82 -0.31 5.41 16 35 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.04 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 38 H 0.06 1.48 7.30 -51.93 -0.38 1.10 16 39 H 0.05 1.31 7.54 -51.93 -0.39 0.92 16 40 H 0.38 4.69 9.12 45.56 0.42 5.11 16 LS Contribution 329.91 15.07 4.97 4.97 Total: -1.00 -32.77 329.91 -8.06 -40.83 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -5.63 Total: 7.50 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: -1.77 Total: 3.77 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: -0.27 Total: -54.11 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.34 Total: -20.28 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.77 -8.06 -40.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083791046.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.879 kcal (2) G-P(sol) polarization free energy of solvation -32.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds