Wall clock time and date at job start Mon Mar 30 2020 01:15:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.53000 * 109.47303 * 2 1
4 4 H 1.08995 * 115.54940 * 29.27297 * 3 2 1
5 5 C 1.53002 * 117.49900 * 243.60713 * 3 2 1
6 6 C 1.53000 * 60.00118 * 252.50991 * 5 3 2
7 7 H 1.09001 * 117.49539 * 107.48640 * 6 5 3
8 8 C 1.50693 * 117.49631 * 252.50980 * 6 5 3
9 9 O 1.21278 * 120.00254 * 68.62660 * 8 6 5
10 10 N 1.34778 * 120.00205 * 248.61734 * 8 6 5
11 11 C 1.46500 * 120.00300 * 180.02562 * 10 8 6
12 12 H 1.08998 * 110.88086 * 31.12429 * 11 10 8
13 13 C 1.54902 * 111.00673 * 267.20059 * 11 10 8
14 14 N 1.47429 * 104.83152 * 204.91612 * 13 11 10
15 15 C 1.36934 * 125.64361 * 204.14895 * 14 13 11
16 16 H 1.07999 * 120.00446 * 354.84629 * 15 14 13
17 17 C 1.38813 * 119.99714 * 174.85043 * 15 14 13
18 18 N 1.31622 * 120.00052 * 7.05960 * 17 15 14
19 19 Si 1.86796 * 120.00120 * 187.06234 * 17 15 14
20 20 H 1.48501 * 109.47310 * 94.98792 * 19 17 15
21 21 H 1.48501 * 109.47201 * 214.98521 * 19 17 15
22 22 H 1.48495 * 109.47248 * 334.98609 * 19 17 15
23 23 C 1.47018 * 108.70160 * 24.13069 * 14 13 11
24 24 C 1.54324 * 107.27275 * 358.93908 * 23 14 13
25 25 H 1.09003 * 110.71778 * 219.44251 * 24 23 14
26 26 O 1.42894 * 110.87104 * 96.24727 * 24 23 14
27 27 H 1.08991 * 109.47159 * 179.97438 * 1 2 3
28 28 H 1.08995 * 109.46901 * 300.00454 * 1 2 3
29 29 H 1.09006 * 109.46867 * 59.99928 * 1 2 3
30 30 H 1.09005 * 109.47347 * 239.99850 * 2 1 3
31 31 H 1.08993 * 109.47013 * 120.00341 * 2 1 3
32 32 H 1.09003 * 117.49926 * 0.02562 * 5 3 2
33 33 H 1.08997 * 117.49940 * 145.01953 * 5 3 2
34 34 H 0.97003 * 119.99784 * 0.02562 * 10 8 6
35 35 H 1.08999 * 110.36646 * 323.75623 * 13 11 10
36 36 H 1.08996 * 110.36681 * 86.07396 * 13 11 10
37 37 H 0.96996 * 120.00258 * 180.02562 * 18 17 15
38 38 H 1.09004 * 109.87734 * 239.52020 * 23 14 13
39 39 H 1.08997 * 109.88182 * 118.35627 * 23 14 13
40 40 H 0.96697 * 114.00588 * 66.39104 * 26 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 1 1.3881 2.1716 0.4808
5 6 2.8444 1.9074 -1.2157
6 6 3.5502 1.6579 0.1186
7 1 4.1803 0.7718 0.1966
8 6 4.0227 2.8620 0.8916
9 8 3.2156 3.6167 1.3915
10 7 5.3423 3.1002 1.0278
11 6 5.8017 4.2706 1.7798
12 1 5.1018 4.5189 2.5777
13 6 6.0261 5.4814 0.8401
14 7 7.0127 6.3243 1.5397
15 6 7.1810 7.6715 1.3609
16 1 6.6183 8.1895 0.5985
17 6 8.0749 8.3713 2.1597
18 7 8.8610 7.7222 2.9923
19 14 8.1622 10.2341 2.0532
20 1 7.3019 10.8311 3.1062
21 1 9.5659 10.6761 2.2514
22 1 7.6880 10.6763 0.7172
23 6 7.7857 5.4790 2.4614
24 6 7.2296 4.0443 2.3428
25 1 7.1871 3.5652 3.3210
26 8 8.0139 3.2677 1.4353
27 1 -0.3633 -1.0276 -0.0005
28 1 -0.3633 0.5139 0.8899
29 1 -0.3633 0.5139 -0.8900
30 1 1.8934 -0.5139 -0.8900
31 1 1.8933 -0.5139 0.8899
32 1 3.0098 1.1858 -2.0157
33 1 2.7218 2.9425 -1.5343
34 1 5.9878 2.4967 0.6278
35 1 6.4234 5.1488 -0.1189
36 1 5.0941 6.0280 0.6964
37 1 9.4854 8.2112 3.5508
38 1 7.6666 5.8396 3.4831
39 1 8.8391 5.4926 2.1817
40 1 8.9156 3.0978 1.7404
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001083791046.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:15:42
Heat of formation + Delta-G solvation = -42.712480 kcal
Electronic energy + Delta-G solvation = -20675.471290 eV
Core-core repulsion = 17491.489547 eV
Total energy + Delta-G solvation = -3183.981743 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 268.157 amu
Computer time = 0.58 seconds
Orbital eigenvalues (eV)
-39.94778 -38.27741 -36.82628 -34.83563 -33.87822 -32.24695 -31.58635 -28.55729
-27.20721 -24.95129 -24.09356 -23.48763 -20.80802 -20.48963 -20.06537 -19.73789
-17.54572 -16.86226 -16.77046 -15.47533 -14.97485 -14.87890 -14.72599 -14.29739
-14.18776 -13.92801 -13.15690 -12.88333 -12.72808 -12.58826 -12.44201 -12.26998
-12.17136 -11.50913 -11.29466 -11.20023 -10.94754 -10.85938 -10.52729 -10.48183
-10.35389 -10.15015 -10.10002 -9.82966 -9.58574 -9.29295 -8.66082 -8.60168
-6.87044 -5.76062 -3.07765 2.68547 3.30893 3.40750 3.46076 3.47743
3.79947 4.43813 4.52701 4.61299 4.67065 4.78221 5.00820 5.12751
5.16423 5.26767 5.31266 5.39149 5.52006 5.52319 5.64409 5.72385
5.74789 5.83553 5.89110 5.92862 5.94956 6.10508 6.23094 6.24032
6.63968 6.67550 6.96169 7.33607 7.44285 7.73210 7.87974 8.07802
8.19905 8.52937 9.17699 9.78077 10.43194 11.36637
Molecular weight = 268.16amu
Principal moments of inertia in cm(-1)
A = 0.034497 B = 0.003823 C = 0.003585
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 811.467606 B = 7322.452040 C = 7809.427238
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.094 4.094
3 C -0.120 4.120
4 H 0.118 0.882
5 C -0.149 4.149
6 C -0.188 4.188
7 H 0.121 0.879
8 C 0.538 3.462
9 O -0.546 6.546
10 N -0.704 5.704
11 C 0.138 3.862
12 H 0.104 0.896
13 C 0.132 3.868
14 N -0.601 5.601
15 C -0.225 4.225
16 H 0.080 0.920
17 C -0.009 4.009
18 N -0.925 5.925
19 Si 0.913 3.087
20 H -0.288 1.288
21 H -0.291 1.291
22 H -0.280 1.280
23 C 0.154 3.846
24 C 0.068 3.932
25 H 0.060 0.940
26 O -0.568 6.568
27 H 0.053 0.947
28 H 0.056 0.944
29 H 0.056 0.944
30 H 0.064 0.936
31 H 0.066 0.934
32 H 0.102 0.898
33 H 0.099 0.901
34 H 0.407 0.593
35 H 0.025 0.975
36 H 0.043 0.957
37 H 0.253 0.747
38 H 0.057 0.943
39 H 0.051 0.949
40 H 0.379 0.621
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.760 -16.705 -4.968 19.505
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.132 4.132
3 C -0.139 4.139
4 H 0.136 0.864
5 C -0.186 4.186
6 C -0.209 4.209
7 H 0.139 0.861
8 C 0.324 3.676
9 O -0.424 6.424
10 N -0.354 5.354
11 C 0.032 3.968
12 H 0.122 0.878
13 C 0.004 3.996
14 N -0.328 5.328
15 C -0.353 4.353
16 H 0.097 0.903
17 C -0.204 4.204
18 N -0.572 5.572
19 Si 0.744 3.256
20 H -0.215 1.215
21 H -0.218 1.218
22 H -0.206 1.206
23 C 0.028 3.972
24 C 0.008 3.992
25 H 0.078 0.922
26 O -0.374 6.374
27 H 0.073 0.927
28 H 0.075 0.925
29 H 0.075 0.925
30 H 0.083 0.917
31 H 0.085 0.915
32 H 0.120 0.880
33 H 0.118 0.882
34 H 0.243 0.757
35 H 0.043 0.957
36 H 0.062 0.938
37 H 0.063 0.937
38 H 0.075 0.925
39 H 0.069 0.931
40 H 0.227 0.773
Dipole moment (debyes) X Y Z Total
from point charges -9.738 -15.955 -4.860 19.313
hybrid contribution 1.171 0.748 0.196 1.403
sum -8.567 -15.207 -4.664 18.066
Atomic orbital electron populations
1.21740 0.95266 1.01480 1.02207 1.21148 0.96200 0.93786 1.02026
1.22468 0.91619 0.98526 1.01289 0.86428 1.23091 1.02058 1.03212
0.90281 1.22293 0.97432 0.99090 1.02079 0.86112 1.19660 0.82538
0.85465 0.79975 1.90691 1.53980 1.48855 1.48851 1.45703 1.06572
1.28120 1.55014 1.22348 0.93355 0.85807 0.95276 0.87795 1.21831
0.93199 0.90421 0.94114 1.44284 1.37794 1.04360 1.46326 1.19099
1.20136 0.81563 1.14535 0.90253 1.24813 0.98649 0.98285 0.98698
1.69928 1.25404 1.33601 1.28313 0.86069 0.76881 0.85013 0.77669
1.21542 1.21770 1.20584 1.21869 0.95455 0.84388 0.95483 1.23506
0.90676 0.94103 0.90918 0.92206 1.86244 1.28047 1.74271 1.48809
0.92747 0.92462 0.92531 0.91743 0.91490 0.87955 0.88215 0.75749
0.95697 0.93822 0.93720 0.92502 0.93093 0.77326
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.11 9.87 37.16 0.37 -0.75 16
2 C -0.09 -0.77 6.22 -26.73 -0.17 -0.93 16
3 C -0.12 -1.28 5.25 -90.62 -0.48 -1.76 16
4 H 0.12 1.49 7.60 -51.93 -0.39 1.09 16
5 C -0.15 -1.52 9.88 -26.73 -0.26 -1.78 16
6 C -0.19 -2.18 5.91 -91.77 -0.54 -2.72 16
7 H 0.12 1.13 8.14 -51.93 -0.42 0.71 16
8 C 0.54 8.58 7.61 -10.99 -0.08 8.50 16
9 O -0.55 -10.83 15.90 5.56 0.09 -10.74 16
10 N -0.70 -11.18 5.17 -51.74 -0.27 -11.44 16
11 C 0.14 2.64 3.31 -65.79 -0.22 2.42 16
12 H 0.10 2.14 7.54 -51.93 -0.39 1.75 16
13 C 0.13 2.96 6.92 -2.53 -0.02 2.94 16
14 N -0.60 -15.71 3.39 -170.08 -0.58 -16.29 16
15 C -0.23 -6.42 10.27 -15.06 -0.15 -6.57 16
16 H 0.08 2.21 7.84 -52.49 -0.41 1.80 16
17 C -0.01 -0.24 5.48 -17.43 -0.10 -0.34 16
18 N -0.92 -26.95 10.36 55.49 0.57 -26.37 16
19 Si 0.91 22.34 29.56 -169.99 -5.02 17.32 16
20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16
21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16
22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16
23 C 0.15 3.64 5.15 -3.07 -0.02 3.63 16
24 C 0.07 1.24 4.19 -24.90 -0.10 1.14 16
25 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16
26 O -0.57 -9.11 12.15 -35.23 -0.43 -9.54 16
27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16
28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16
29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16
30 H 0.06 0.45 7.88 -51.93 -0.41 0.04 16
31 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16
32 H 0.10 0.81 8.03 -51.93 -0.42 0.39 16
33 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16
34 H 0.41 5.72 7.58 -40.82 -0.31 5.41 16
35 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16
36 H 0.04 1.02 8.14 -51.93 -0.42 0.59 16
37 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16
38 H 0.06 1.48 7.30 -51.93 -0.38 1.10 16
39 H 0.05 1.31 7.54 -51.93 -0.39 0.92 16
40 H 0.38 4.69 9.12 45.56 0.42 5.11 16
LS Contribution 329.91 15.07 4.97 4.97
Total: -1.00 -32.77 329.91 -8.06 -40.83
By element:
Atomic # 1 Polarization: 13.12 SS G_CDS: -5.63 Total: 7.50 kcal
Atomic # 6 Polarization: 5.54 SS G_CDS: -1.77 Total: 3.77 kcal
Atomic # 7 Polarization: -53.84 SS G_CDS: -0.27 Total: -54.11 kcal
Atomic # 8 Polarization: -19.94 SS G_CDS: -0.34 Total: -20.28 kcal
Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal
Total LS contribution 4.97 Total: 4.97 kcal
Total: -32.77 -8.06 -40.83 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001083791046.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -1.879 kcal
(2) G-P(sol) polarization free energy of solvation -32.773 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.652 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.061 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.833 kcal
(6) G-S(sol) free energy of system = (1) + (5) -42.712 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.58 seconds