Wall clock time and date at job start Mon Mar 30 2020 01:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47303 * 2 1 4 4 H 1.08995 * 115.54940 * 29.27297 * 3 2 1 5 5 C 1.53002 * 117.49900 * 243.60713 * 3 2 1 6 6 C 1.53000 * 60.00118 * 252.50991 * 5 3 2 7 7 H 1.09001 * 117.49539 * 107.48640 * 6 5 3 8 8 C 1.50693 * 117.49631 * 252.50980 * 6 5 3 9 9 O 1.21278 * 120.00254 * 68.62660 * 8 6 5 10 10 N 1.34778 * 120.00205 * 248.61734 * 8 6 5 11 11 C 1.46500 * 120.00300 * 180.02562 * 10 8 6 12 12 H 1.08998 * 110.88086 * 31.12429 * 11 10 8 13 13 C 1.54902 * 111.00673 * 267.20059 * 11 10 8 14 14 N 1.47429 * 104.83152 * 204.91612 * 13 11 10 15 15 C 1.36934 * 125.64361 * 204.14895 * 14 13 11 16 16 H 1.07999 * 120.00446 * 354.84629 * 15 14 13 17 17 C 1.38813 * 119.99714 * 174.85043 * 15 14 13 18 18 N 1.31622 * 120.00052 * 7.05960 * 17 15 14 19 19 Si 1.86796 * 120.00120 * 187.06234 * 17 15 14 20 20 H 1.48501 * 109.47310 * 94.98792 * 19 17 15 21 21 H 1.48501 * 109.47201 * 214.98521 * 19 17 15 22 22 H 1.48495 * 109.47248 * 334.98609 * 19 17 15 23 23 C 1.47018 * 108.70160 * 24.13069 * 14 13 11 24 24 C 1.54324 * 107.27275 * 358.93908 * 23 14 13 25 25 H 1.09003 * 110.71778 * 219.44251 * 24 23 14 26 26 O 1.42894 * 110.87104 * 96.24727 * 24 23 14 27 27 H 1.08991 * 109.47159 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46901 * 300.00454 * 1 2 3 29 29 H 1.09006 * 109.46867 * 59.99928 * 1 2 3 30 30 H 1.09005 * 109.47347 * 239.99850 * 2 1 3 31 31 H 1.08993 * 109.47013 * 120.00341 * 2 1 3 32 32 H 1.09003 * 117.49926 * 0.02562 * 5 3 2 33 33 H 1.08997 * 117.49940 * 145.01953 * 5 3 2 34 34 H 0.97003 * 119.99784 * 0.02562 * 10 8 6 35 35 H 1.08999 * 110.36646 * 323.75623 * 13 11 10 36 36 H 1.08996 * 110.36681 * 86.07396 * 13 11 10 37 37 H 0.96996 * 120.00258 * 180.02562 * 18 17 15 38 38 H 1.09004 * 109.87734 * 239.52020 * 23 14 13 39 39 H 1.08997 * 109.88182 * 118.35627 * 23 14 13 40 40 H 0.96697 * 114.00588 * 66.39104 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.3881 2.1716 0.4808 5 6 2.8444 1.9074 -1.2157 6 6 3.5502 1.6579 0.1186 7 1 4.1803 0.7718 0.1966 8 6 4.0227 2.8620 0.8916 9 8 3.2156 3.6167 1.3915 10 7 5.3423 3.1002 1.0278 11 6 5.8017 4.2706 1.7798 12 1 5.1018 4.5189 2.5777 13 6 6.0261 5.4814 0.8401 14 7 7.0127 6.3243 1.5397 15 6 7.1810 7.6715 1.3609 16 1 6.6183 8.1895 0.5985 17 6 8.0749 8.3713 2.1597 18 7 8.8610 7.7222 2.9923 19 14 8.1622 10.2341 2.0532 20 1 7.3019 10.8311 3.1062 21 1 9.5659 10.6761 2.2514 22 1 7.6880 10.6763 0.7172 23 6 7.7857 5.4790 2.4614 24 6 7.2296 4.0443 2.3428 25 1 7.1871 3.5652 3.3210 26 8 8.0139 3.2677 1.4353 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.0098 1.1858 -2.0157 33 1 2.7218 2.9425 -1.5343 34 1 5.9878 2.4967 0.6278 35 1 6.4234 5.1488 -0.1189 36 1 5.0941 6.0280 0.6964 37 1 9.4854 8.2112 3.5508 38 1 7.6666 5.8396 3.4831 39 1 8.8391 5.4926 2.1817 40 1 8.9156 3.0978 1.7404 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083791046.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:41 Heat of formation + Delta-G solvation = -67.059050 kcal Electronic energy + Delta-G solvation = -20676.527036 eV Core-core repulsion = 17491.489547 eV Total energy + Delta-G solvation = -3185.037489 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.23930 -39.74431 -37.90366 -36.48246 -35.42035 -33.63457 -32.84081 -30.36439 -28.94512 -26.69763 -25.16050 -24.49124 -22.38908 -21.80402 -21.39516 -20.96693 -19.24426 -18.41007 -18.12190 -16.97154 -16.75032 -16.04920 -15.92535 -15.73244 -15.32930 -15.17662 -14.76932 -14.55634 -14.37479 -13.98785 -13.50019 -13.36268 -13.21381 -12.95690 -12.82924 -12.79362 -12.31431 -12.17354 -12.11954 -11.98366 -11.91100 -11.89269 -11.22927 -11.02711 -10.90810 -10.77508 -10.73751 -10.08731 -8.97579 -7.92350 -5.27237 1.43513 1.46171 1.48238 1.54819 2.04772 2.47041 2.88324 3.15767 3.27438 3.54171 3.71661 3.78328 3.82911 3.88690 3.95739 4.19885 4.25076 4.31143 4.47703 4.52042 4.60966 4.63725 4.78779 4.80911 4.94825 5.01461 5.04652 5.18321 5.26150 5.32867 5.34618 5.41698 5.48495 5.53703 5.61861 6.11867 6.61229 6.86207 7.03823 7.27511 7.67787 8.32126 9.18134 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.034497 B = 0.003823 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.467606 B = 7322.452040 C = 7809.427238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.088 4.088 3 C -0.121 4.121 4 H 0.090 0.910 5 C -0.138 4.138 6 C -0.191 4.191 7 H 0.154 0.846 8 C 0.533 3.467 9 O -0.591 6.591 10 N -0.692 5.692 11 C 0.150 3.850 12 H 0.088 0.912 13 C 0.133 3.867 14 N -0.622 5.622 15 C -0.250 4.250 16 H 0.076 0.924 17 C -0.059 4.059 18 N -0.946 5.946 19 Si 0.980 3.020 20 H -0.286 1.286 21 H -0.289 1.289 22 H -0.271 1.271 23 C 0.159 3.841 24 C 0.094 3.906 25 H 0.090 0.910 26 O -0.563 6.563 27 H 0.069 0.931 28 H 0.045 0.955 29 H 0.056 0.944 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.136 0.864 33 H 0.081 0.919 34 H 0.420 0.580 35 H 0.026 0.974 36 H 0.026 0.974 37 H 0.250 0.750 38 H 0.026 0.974 39 H 0.026 0.974 40 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.844 -18.774 -5.970 21.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.126 4.126 3 C -0.140 4.140 4 H 0.108 0.892 5 C -0.175 4.175 6 C -0.212 4.212 7 H 0.171 0.829 8 C 0.321 3.679 9 O -0.472 6.472 10 N -0.343 5.343 11 C 0.042 3.958 12 H 0.106 0.894 13 C 0.006 3.994 14 N -0.349 5.349 15 C -0.379 4.379 16 H 0.094 0.906 17 C -0.252 4.252 18 N -0.594 5.594 19 Si 0.807 3.193 20 H -0.213 1.213 21 H -0.215 1.215 22 H -0.195 1.195 23 C 0.033 3.967 24 C 0.033 3.967 25 H 0.108 0.892 26 O -0.372 6.372 27 H 0.088 0.912 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.103 0.897 31 H 0.089 0.911 32 H 0.154 0.846 33 H 0.100 0.900 34 H 0.258 0.742 35 H 0.044 0.956 36 H 0.044 0.956 37 H 0.060 0.940 38 H 0.044 0.956 39 H 0.044 0.956 40 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -9.806 -18.073 -5.888 21.388 hybrid contribution 1.184 1.403 0.473 1.896 sum -8.622 -16.670 -5.415 19.533 Atomic orbital electron populations 1.21752 0.95066 1.02293 1.01704 1.21158 0.96342 0.91868 1.03189 1.22502 0.90587 0.99668 1.01237 0.89221 1.23208 1.00664 1.03173 0.90497 1.22329 0.98446 0.97952 1.02434 0.82887 1.20484 0.81867 0.86179 0.79341 1.90676 1.55012 1.50794 1.50733 1.45562 1.07111 1.27043 1.54598 1.21921 0.93792 0.85806 0.94234 0.89401 1.21865 0.91580 0.91271 0.94672 1.44565 1.38952 1.04410 1.46959 1.19412 1.20358 0.83181 1.14913 0.90587 1.25636 0.98385 1.02670 0.98546 1.70118 1.25640 1.34945 1.28720 0.85050 0.76703 0.79589 0.77926 1.21336 1.21523 1.19547 1.21733 0.94265 0.87431 0.93238 1.23104 0.89744 0.91214 0.92619 0.89225 1.86203 1.29412 1.73107 1.48449 0.91235 0.93584 0.92530 0.89701 0.91093 0.84634 0.90000 0.74224 0.95644 0.95580 0.94033 0.95584 0.95582 0.75038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.87 71.98 0.71 -1.25 16 2 C -0.09 -1.19 6.22 30.60 0.19 -1.00 16 3 C -0.12 -2.39 5.25 -10.79 -0.06 -2.44 16 4 H 0.09 2.29 7.60 -2.39 -0.02 2.28 16 5 C -0.14 -2.49 9.88 30.60 0.30 -2.19 16 6 C -0.19 -3.98 5.91 -11.54 -0.07 -4.05 16 7 H 0.15 2.22 8.14 -2.39 -0.02 2.20 16 8 C 0.53 16.57 7.61 87.65 0.67 17.24 16 9 O -0.59 -23.90 15.90 -3.02 -0.05 -23.95 16 10 N -0.69 -21.01 5.17 -435.99 -2.25 -23.26 16 11 C 0.15 5.68 3.31 46.38 0.15 5.83 16 12 H 0.09 3.67 7.54 -2.39 -0.02 3.65 16 13 C 0.13 6.09 6.92 86.85 0.60 6.69 16 14 N -0.62 -33.37 3.39 -692.01 -2.35 -35.72 16 15 C -0.25 -14.60 10.27 84.03 0.86 -13.74 16 16 H 0.08 4.34 7.84 -2.91 -0.02 4.32 16 17 C -0.06 -3.40 5.48 84.86 0.46 -2.93 16 18 N -0.95 -56.28 10.36 21.65 0.22 -56.05 16 19 Si 0.98 46.47 29.56 68.60 2.03 48.50 16 20 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 21 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 22 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 23 C 0.16 7.67 5.15 86.73 0.45 8.12 16 24 C 0.09 3.31 4.19 31.78 0.13 3.45 16 25 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 26 O -0.56 -16.70 12.15 -148.98 -1.81 -18.51 16 27 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.08 0.83 7.88 -2.38 -0.02 0.81 16 31 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.14 1.57 8.03 -2.39 -0.02 1.55 16 33 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.42 10.67 7.58 -92.71 -0.70 9.96 16 35 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 38 H 0.03 1.40 7.30 -2.39 -0.02 1.38 16 39 H 0.03 1.37 7.54 -2.39 -0.02 1.35 16 40 H 0.40 8.77 9.12 -74.06 -0.68 8.10 16 Total: -1.00 -73.20 329.91 -0.14 -73.33 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: -0.34 Total: 21.91 kcal Atomic # 6 Polarization: 9.34 SS G_CDS: 4.41 Total: 13.74 kcal Atomic # 7 Polarization: -110.65 SS G_CDS: -4.38 Total: -115.03 kcal Atomic # 8 Polarization: -40.60 SS G_CDS: -1.86 Total: -42.46 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.50 kcal Total: -73.20 -0.14 -73.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083791046.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.275 kcal (2) G-P(sol) polarization free energy of solvation -73.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds