Wall clock time and date at job start Mon Mar 30 2020 01:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.50704 * 119.99837 * 2 1 4 4 C 1.32995 * 120.00121 * 180.02562 * 2 1 3 5 5 C 1.47098 * 119.99853 * 359.97438 * 4 2 1 6 6 O 1.21616 * 120.00367 * 0.02562 * 5 4 2 7 7 N 1.34781 * 119.99989 * 180.02562 * 5 4 2 8 8 C 1.46499 * 119.99985 * 180.02562 * 7 5 4 9 9 H 1.08996 * 109.46208 * 324.97375 * 8 7 5 10 10 C 1.53044 * 109.46007 * 84.93549 * 8 7 5 11 11 C 1.52755 * 109.38132 * 181.25927 * 10 8 7 12 12 N 1.46923 * 109.00900 * 305.58408 * 11 10 8 13 13 C 1.36943 * 120.62930 * 233.58508 * 12 11 10 14 14 H 1.08004 * 119.99477 * 152.17479 * 13 12 11 15 15 C 1.38811 * 119.99955 * 332.17173 * 13 12 11 16 16 N 1.31614 * 120.00254 * 342.76805 * 15 13 12 17 17 Si 1.86800 * 119.99811 * 162.76720 * 15 13 12 18 18 H 1.48500 * 109.47142 * 179.97438 * 17 15 13 19 19 H 1.48496 * 109.47443 * 300.00287 * 17 15 13 20 20 H 1.48507 * 109.46844 * 60.00261 * 17 15 13 21 21 C 1.46927 * 118.73893 * 53.31139 * 12 11 10 22 22 C 1.53046 * 109.45791 * 204.99746 * 8 7 5 23 23 H 1.08998 * 109.52193 * 58.65110 * 22 8 7 24 24 O 1.42894 * 109.49909 * 298.57021 * 22 8 7 25 25 H 1.08997 * 109.47334 * 239.99981 * 1 2 3 26 26 H 1.08995 * 109.47619 * 0.02562 * 1 2 3 27 27 H 1.09006 * 109.46830 * 120.00294 * 1 2 3 28 28 H 1.09004 * 109.46900 * 269.99484 * 3 2 1 29 29 H 1.08994 * 109.47010 * 30.00002 * 3 2 1 30 30 H 1.08996 * 109.46897 * 150.00074 * 3 2 1 31 31 H 1.08001 * 120.00010 * 180.02562 * 4 2 1 32 32 H 0.97006 * 119.99849 * 0.02562 * 7 5 4 33 33 H 1.09007 * 109.49256 * 301.33300 * 10 8 7 34 34 H 1.09002 * 109.49531 * 61.42998 * 10 8 7 35 35 H 1.09005 * 109.50719 * 185.70148 * 11 10 8 36 36 H 1.09006 * 109.43430 * 65.42411 * 11 10 8 37 37 H 0.97000 * 119.99965 * 179.97438 * 16 15 13 38 38 H 1.09004 * 109.58525 * 66.43417 * 21 12 11 39 39 H 1.08995 * 109.58430 * 186.71314 * 21 12 11 40 40 H 0.96705 * 113.99942 * 180.16232 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3052 0.0000 4 6 2.1720 -1.1518 -0.0005 5 6 1.4365 -2.4257 -0.0005 6 8 0.2203 -2.4257 -0.0005 7 7 2.1104 -3.5929 -0.0005 8 6 1.3779 -4.8616 -0.0011 9 1 0.4673 -4.7555 0.5884 10 6 1.0132 -5.2392 -1.4387 11 6 0.2224 -6.5461 -1.4345 12 7 0.9949 -7.5706 -0.7187 13 6 1.2682 -8.7764 -1.3075 14 1 2.1534 -9.3269 -1.0250 15 6 0.4074 -9.2911 -2.2671 16 7 -0.8165 -8.8191 -2.3745 17 14 0.9861 -10.6538 -3.4062 18 1 -0.1137 -11.0252 -4.3324 19 1 2.1554 -10.1809 -4.1898 20 1 1.3763 -11.8394 -2.6014 21 6 1.4739 -7.2744 0.6383 22 6 2.2554 -5.9572 0.6088 23 1 2.5345 -5.6770 1.6245 24 8 3.4343 -6.1196 -0.1822 25 1 -0.3634 -0.5138 0.8899 26 1 -0.3634 1.0276 -0.0005 27 1 -0.3633 -0.5139 -0.8900 28 1 2.4422 1.6197 -1.0277 29 1 1.6714 2.0647 0.5138 30 1 3.2128 1.1748 0.5138 31 1 3.2520 -1.1517 -0.0001 32 1 3.0804 -3.5929 -0.0001 33 1 0.4077 -4.4475 -1.8802 34 1 1.9242 -5.3698 -2.0227 35 1 0.0489 -6.8698 -2.4608 36 1 -0.7323 -6.3907 -0.9319 37 1 -1.4179 -9.1786 -3.0453 38 1 0.6233 -7.1797 1.3135 39 1 2.1238 -8.0798 0.9802 40 1 4.0369 -6.8014 0.1453 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099657028.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:32 Heat of formation + Delta-G solvation = -53.481904 kcal Electronic energy + Delta-G solvation = -21159.647904 eV Core-core repulsion = 17975.199164 eV Total energy + Delta-G solvation = -3184.448740 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.79205 -38.11984 -35.52517 -34.90182 -34.09017 -31.82299 -30.09000 -28.93195 -27.95477 -27.52930 -24.94658 -22.41472 -22.05528 -20.55682 -19.59000 -18.48110 -17.14989 -16.71073 -16.02193 -15.59535 -14.80166 -14.64244 -14.28809 -14.24377 -13.98397 -13.68933 -13.59943 -13.18684 -12.79509 -12.50080 -12.35197 -12.05136 -11.92149 -11.78997 -11.61846 -11.17882 -10.97685 -10.81183 -10.65975 -10.25405 -10.19649 -10.01782 -9.68480 -9.40179 -9.21233 -9.18379 -8.55304 -8.33569 -6.64917 -5.76139 -3.18418 1.42653 3.39762 3.46257 3.47403 3.50801 3.57992 4.49756 4.68612 4.74786 4.79743 5.16772 5.28092 5.30057 5.39134 5.40328 5.44469 5.60844 5.64489 5.64976 5.79992 5.88466 6.00514 6.10093 6.29586 6.44041 6.46446 6.50533 6.56738 6.61471 6.70460 6.87769 7.03199 7.44492 7.70564 7.80551 7.91260 8.11940 8.46576 8.58232 9.22187 9.85196 10.41530 11.32285 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.034871 B = 0.004275 C = 0.004070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.755629 B = 6548.513203 C = 6878.449332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.042 4.042 3 C -0.125 4.125 4 C -0.231 4.231 5 C 0.538 3.462 6 O -0.545 6.545 7 N -0.717 5.717 8 C 0.162 3.838 9 H 0.089 0.911 10 C -0.142 4.142 11 C 0.174 3.826 12 N -0.582 5.582 13 C -0.251 4.251 14 H 0.064 0.936 15 C 0.003 3.997 16 N -0.901 5.901 17 Si 0.903 3.097 18 H -0.291 1.291 19 H -0.284 1.284 20 H -0.283 1.283 21 C 0.119 3.881 22 C 0.082 3.918 23 H 0.045 0.955 24 O -0.555 6.555 25 H 0.082 0.918 26 H 0.048 0.952 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.122 0.878 32 H 0.400 0.600 33 H 0.051 0.949 34 H 0.064 0.936 35 H 0.090 0.910 36 H 0.018 0.982 37 H 0.254 0.746 38 H 0.027 0.973 39 H 0.061 0.939 40 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.903 15.471 6.272 18.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.044 4.044 3 C -0.181 4.181 4 C -0.252 4.252 5 C 0.328 3.672 6 O -0.425 6.425 7 N -0.367 5.367 8 C 0.059 3.941 9 H 0.107 0.893 10 C -0.183 4.183 11 C 0.048 3.952 12 N -0.304 5.304 13 C -0.381 4.381 14 H 0.081 0.919 15 C -0.196 4.196 16 N -0.546 5.546 17 Si 0.733 3.267 18 H -0.217 1.217 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.009 4.009 22 C 0.020 3.980 23 H 0.062 0.938 24 O -0.360 6.360 25 H 0.101 0.899 26 H 0.067 0.933 27 H 0.102 0.898 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.140 0.860 32 H 0.233 0.767 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.108 0.892 36 H 0.037 0.963 37 H 0.065 0.935 38 H 0.044 0.956 39 H 0.079 0.921 40 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 6.602 15.845 5.808 18.121 hybrid contribution 1.104 -1.211 -0.287 1.664 sum 7.706 14.633 5.521 17.436 Atomic orbital electron populations 1.21027 0.90762 1.00701 1.04612 1.22539 0.96973 0.94343 0.90527 1.20998 0.99946 0.94443 1.02749 1.22443 0.99896 0.92309 1.10549 1.18555 0.87526 0.84376 0.76785 1.90775 1.13653 1.87708 1.50383 1.46095 1.10353 1.05688 1.74515 1.20976 0.93962 0.80338 0.98864 0.89284 1.22405 1.01355 0.99819 0.94679 1.20686 0.90814 0.84300 0.99432 1.43886 1.62892 1.13519 1.10106 1.19081 1.03510 0.96448 1.19026 0.91862 1.25026 0.94628 0.98393 1.01572 1.70028 1.04362 1.44697 1.35470 0.86362 0.77692 0.81732 0.80900 1.21657 1.21035 1.20968 1.21535 0.96444 0.93684 0.89261 1.22626 0.86452 0.96958 0.91933 0.93767 1.86450 1.32646 1.60812 1.56056 0.89921 0.93290 0.89848 0.90487 0.91131 0.91307 0.86010 0.76650 0.93058 0.91696 0.89230 0.96342 0.93549 0.95564 0.92088 0.78211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.38 8.33 36.00 0.30 -1.08 16 2 C -0.04 -0.46 6.11 -101.17 -0.62 -1.08 16 3 C -0.12 -0.92 9.98 36.01 0.36 -0.56 16 4 C -0.23 -2.81 9.63 -37.81 -0.36 -3.17 16 5 C 0.54 8.55 7.70 -12.66 -0.10 8.45 16 6 O -0.54 -10.34 12.73 5.26 0.07 -10.27 16 7 N -0.72 -11.14 5.05 -54.94 -0.28 -11.42 16 8 C 0.16 2.98 2.20 -67.88 -0.15 2.83 16 9 H 0.09 1.77 7.58 -51.93 -0.39 1.38 16 10 C -0.14 -3.03 5.50 -26.83 -0.15 -3.17 16 11 C 0.17 4.34 5.28 -3.94 -0.02 4.32 16 12 N -0.58 -14.57 2.94 -172.58 -0.51 -15.08 16 13 C -0.25 -6.87 9.58 -15.06 -0.14 -7.02 16 14 H 0.06 1.68 7.89 -52.48 -0.41 1.26 16 15 C 0.00 0.07 4.91 -17.43 -0.09 -0.02 16 16 N -0.90 -26.54 11.19 55.49 0.62 -25.92 16 17 Si 0.90 21.87 29.59 -169.99 -5.03 16.84 16 18 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 C 0.12 2.41 6.16 -3.71 -0.02 2.38 16 22 C 0.08 1.39 3.38 -26.61 -0.09 1.30 16 23 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 24 O -0.55 -9.21 12.09 -35.23 -0.43 -9.64 16 25 H 0.08 1.12 7.22 -51.93 -0.37 0.74 16 26 H 0.05 0.46 7.94 -51.93 -0.41 0.05 16 27 H 0.08 1.17 7.22 -51.93 -0.37 0.79 16 28 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.45 8.05 -51.93 -0.42 0.03 16 30 H 0.07 0.44 8.07 -51.93 -0.42 0.02 16 31 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 32 H 0.40 5.39 8.24 -40.82 -0.34 5.05 16 33 H 0.05 1.10 8.14 -51.92 -0.42 0.67 16 34 H 0.06 1.45 7.61 -51.93 -0.40 1.05 16 35 H 0.09 2.51 6.04 -51.93 -0.31 2.19 16 36 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 38 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 40 H 0.37 4.87 9.08 45.56 0.41 5.28 16 LS Contribution 323.61 15.07 4.88 4.88 Total: -1.00 -32.15 323.61 -7.28 -39.43 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -5.52 Total: 7.99 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: -1.08 Total: 3.19 kcal Atomic # 7 Polarization: -52.25 SS G_CDS: -0.16 Total: -52.42 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -0.36 Total: -19.91 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.03 Total: 16.84 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.15 -7.28 -39.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099657028.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.056 kcal (2) G-P(sol) polarization free energy of solvation -32.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds