Wall clock time and date at job start Mon Mar 30 2020 01:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.50704 * 119.99837 * 2 1 4 4 C 1.32995 * 120.00121 * 180.02562 * 2 1 3 5 5 C 1.47098 * 119.99853 * 359.97438 * 4 2 1 6 6 O 1.21616 * 120.00367 * 0.02562 * 5 4 2 7 7 N 1.34781 * 119.99989 * 180.02562 * 5 4 2 8 8 C 1.46499 * 119.99985 * 180.02562 * 7 5 4 9 9 H 1.08996 * 109.46208 * 324.97375 * 8 7 5 10 10 C 1.53044 * 109.46007 * 84.93549 * 8 7 5 11 11 C 1.52755 * 109.38132 * 181.25927 * 10 8 7 12 12 N 1.46923 * 109.00900 * 305.58408 * 11 10 8 13 13 C 1.36943 * 120.62930 * 233.58508 * 12 11 10 14 14 H 1.08004 * 119.99477 * 152.17479 * 13 12 11 15 15 C 1.38811 * 119.99955 * 332.17173 * 13 12 11 16 16 N 1.31614 * 120.00254 * 342.76805 * 15 13 12 17 17 Si 1.86800 * 119.99811 * 162.76720 * 15 13 12 18 18 H 1.48500 * 109.47142 * 179.97438 * 17 15 13 19 19 H 1.48496 * 109.47443 * 300.00287 * 17 15 13 20 20 H 1.48507 * 109.46844 * 60.00261 * 17 15 13 21 21 C 1.46927 * 118.73893 * 53.31139 * 12 11 10 22 22 C 1.53046 * 109.45791 * 204.99746 * 8 7 5 23 23 H 1.08998 * 109.52193 * 58.65110 * 22 8 7 24 24 O 1.42894 * 109.49909 * 298.57021 * 22 8 7 25 25 H 1.08997 * 109.47334 * 239.99981 * 1 2 3 26 26 H 1.08995 * 109.47619 * 0.02562 * 1 2 3 27 27 H 1.09006 * 109.46830 * 120.00294 * 1 2 3 28 28 H 1.09004 * 109.46900 * 269.99484 * 3 2 1 29 29 H 1.08994 * 109.47010 * 30.00002 * 3 2 1 30 30 H 1.08996 * 109.46897 * 150.00074 * 3 2 1 31 31 H 1.08001 * 120.00010 * 180.02562 * 4 2 1 32 32 H 0.97006 * 119.99849 * 0.02562 * 7 5 4 33 33 H 1.09007 * 109.49256 * 301.33300 * 10 8 7 34 34 H 1.09002 * 109.49531 * 61.42998 * 10 8 7 35 35 H 1.09005 * 109.50719 * 185.70148 * 11 10 8 36 36 H 1.09006 * 109.43430 * 65.42411 * 11 10 8 37 37 H 0.97000 * 119.99965 * 179.97438 * 16 15 13 38 38 H 1.09004 * 109.58525 * 66.43417 * 21 12 11 39 39 H 1.08995 * 109.58430 * 186.71314 * 21 12 11 40 40 H 0.96705 * 113.99942 * 180.16232 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3052 0.0000 4 6 2.1720 -1.1518 -0.0005 5 6 1.4365 -2.4257 -0.0005 6 8 0.2203 -2.4257 -0.0005 7 7 2.1104 -3.5929 -0.0005 8 6 1.3779 -4.8616 -0.0011 9 1 0.4673 -4.7555 0.5884 10 6 1.0132 -5.2392 -1.4387 11 6 0.2224 -6.5461 -1.4345 12 7 0.9949 -7.5706 -0.7187 13 6 1.2682 -8.7764 -1.3075 14 1 2.1534 -9.3269 -1.0250 15 6 0.4074 -9.2911 -2.2671 16 7 -0.8165 -8.8191 -2.3745 17 14 0.9861 -10.6538 -3.4062 18 1 -0.1137 -11.0252 -4.3324 19 1 2.1554 -10.1809 -4.1898 20 1 1.3763 -11.8394 -2.6014 21 6 1.4739 -7.2744 0.6383 22 6 2.2554 -5.9572 0.6088 23 1 2.5345 -5.6770 1.6245 24 8 3.4343 -6.1196 -0.1822 25 1 -0.3634 -0.5138 0.8899 26 1 -0.3634 1.0276 -0.0005 27 1 -0.3633 -0.5139 -0.8900 28 1 2.4422 1.6197 -1.0277 29 1 1.6714 2.0647 0.5138 30 1 3.2128 1.1748 0.5138 31 1 3.2520 -1.1517 -0.0001 32 1 3.0804 -3.5929 -0.0001 33 1 0.4077 -4.4475 -1.8802 34 1 1.9242 -5.3698 -2.0227 35 1 0.0489 -6.8698 -2.4608 36 1 -0.7323 -6.3907 -0.9319 37 1 -1.4179 -9.1786 -3.0453 38 1 0.6233 -7.1797 1.3135 39 1 2.1238 -8.0798 0.9802 40 1 4.0369 -6.8014 0.1453 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099657028.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:31 Heat of formation + Delta-G solvation = -77.628876 kcal Electronic energy + Delta-G solvation = -21160.694995 eV Core-core repulsion = 17975.199164 eV Total energy + Delta-G solvation = -3185.495831 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.11987 -39.59311 -36.64477 -36.47227 -35.46747 -33.69274 -31.83517 -30.53139 -28.83619 -28.57784 -26.76843 -24.10320 -23.74153 -21.87537 -21.16457 -19.65060 -18.92695 -17.89029 -17.50102 -17.16604 -16.48774 -16.03791 -15.81105 -15.51513 -15.32233 -15.07431 -14.86786 -14.67909 -14.27247 -13.77343 -13.65975 -13.30881 -13.22726 -12.96963 -12.78693 -12.68976 -12.58729 -12.46104 -12.36397 -12.07744 -12.06909 -11.91488 -11.40137 -10.88818 -10.56175 -10.50305 -10.21837 -9.75257 -8.68575 -7.86796 -5.32041 0.45979 1.46618 1.50420 1.56600 2.29461 2.38348 2.51248 3.28136 3.39687 3.62942 3.82222 3.88770 3.96054 4.05885 4.27002 4.31102 4.38692 4.60080 4.70178 4.71944 4.76654 4.83268 4.86773 4.93222 4.96081 4.99987 5.08050 5.12032 5.21205 5.44364 5.53808 5.60975 5.62186 5.66574 5.69276 6.36906 6.72036 6.98305 7.13401 7.37584 7.83135 8.35918 9.20056 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.034871 B = 0.004275 C = 0.004070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.755629 B = 6548.513203 C = 6878.449332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.030 4.030 3 C -0.121 4.121 4 C -0.245 4.245 5 C 0.530 3.470 6 O -0.585 6.585 7 N -0.707 5.707 8 C 0.169 3.831 9 H 0.070 0.930 10 C -0.124 4.124 11 C 0.184 3.816 12 N -0.598 5.598 13 C -0.257 4.257 14 H 0.074 0.926 15 C -0.056 4.056 16 N -0.939 5.939 17 Si 0.970 3.030 18 H -0.298 1.298 19 H -0.279 1.279 20 H -0.271 1.271 21 C 0.111 3.889 22 C 0.100 3.900 23 H 0.085 0.915 24 O -0.563 6.563 25 H 0.062 0.938 26 H 0.076 0.924 27 H 0.057 0.943 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.154 0.846 32 H 0.413 0.587 33 H 0.040 0.960 34 H 0.057 0.943 35 H 0.053 0.947 36 H -0.010 1.010 37 H 0.248 0.752 38 H 0.022 0.978 39 H 0.077 0.923 40 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.776 16.861 7.215 21.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.032 4.032 3 C -0.177 4.177 4 C -0.266 4.266 5 C 0.321 3.679 6 O -0.468 6.468 7 N -0.357 5.357 8 C 0.063 3.937 9 H 0.088 0.912 10 C -0.164 4.164 11 C 0.057 3.943 12 N -0.321 5.321 13 C -0.387 4.387 14 H 0.092 0.908 15 C -0.251 4.251 16 N -0.585 5.585 17 Si 0.798 3.202 18 H -0.224 1.224 19 H -0.206 1.206 20 H -0.197 1.197 21 C -0.016 4.016 22 C 0.039 3.961 23 H 0.102 0.898 24 O -0.370 6.370 25 H 0.081 0.919 26 H 0.095 0.905 27 H 0.075 0.925 28 H 0.108 0.892 29 H 0.103 0.897 30 H 0.104 0.896 31 H 0.172 0.828 32 H 0.250 0.750 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.008 0.992 37 H 0.057 0.943 38 H 0.040 0.960 39 H 0.096 0.904 40 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 9.548 17.242 6.787 20.845 hybrid contribution 0.169 -1.584 -0.533 1.680 sum 9.717 15.657 6.254 19.460 Atomic orbital electron populations 1.20983 0.92165 1.01732 1.02411 1.22901 0.96349 0.95907 0.88058 1.21070 1.00354 0.92331 1.03977 1.22481 1.01193 0.90410 1.12519 1.19295 0.87310 0.85586 0.75680 1.90769 1.15612 1.88291 1.52162 1.45882 1.10849 1.04564 1.74430 1.20653 0.94325 0.82471 0.96228 0.91167 1.22109 0.99934 0.97353 0.97006 1.20364 0.90597 0.86248 0.97061 1.44082 1.62955 1.12947 1.12117 1.19508 1.03446 0.96890 1.18823 0.90805 1.25844 0.94725 1.01147 1.03372 1.70203 1.05611 1.46529 1.36180 0.85308 0.76821 0.79327 0.78783 1.22447 1.20554 1.19682 1.21809 0.96889 0.96261 0.86615 1.22340 0.85911 0.94127 0.93696 0.89769 1.86413 1.32440 1.61683 1.56510 0.91921 0.90526 0.92478 0.89156 0.89741 0.89605 0.82848 0.75002 0.94124 0.92427 0.92842 0.99162 0.94263 0.96021 0.90447 0.76080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.73 8.33 71.23 0.59 -2.14 16 2 C -0.03 -0.59 6.11 -17.62 -0.11 -0.70 16 3 C -0.12 -1.31 9.98 71.24 0.71 -0.60 16 4 C -0.25 -5.41 9.63 23.43 0.23 -5.18 16 5 C 0.53 16.49 7.70 86.57 0.67 17.16 16 6 O -0.59 -22.83 12.73 -4.08 -0.05 -22.88 16 7 N -0.71 -20.97 5.05 -445.99 -2.25 -23.22 16 8 C 0.17 6.12 2.20 45.02 0.10 6.22 16 9 H 0.07 2.85 7.58 -2.39 -0.02 2.83 16 10 C -0.12 -5.40 5.50 30.53 0.17 -5.23 16 11 C 0.18 9.62 5.28 86.22 0.46 10.08 16 12 N -0.60 -30.29 2.94 -699.93 -2.06 -32.35 16 13 C -0.26 -14.07 9.58 84.03 0.81 -13.27 16 14 H 0.07 3.82 7.89 -2.91 -0.02 3.80 16 15 C -0.06 -3.18 4.91 84.86 0.42 -2.76 16 16 N -0.94 -57.43 11.19 21.65 0.24 -57.19 16 17 Si 0.97 45.51 29.59 68.60 2.03 47.54 16 18 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 19 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 20 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 21 C 0.11 4.37 6.16 86.36 0.53 4.90 16 22 C 0.10 3.18 3.38 30.67 0.10 3.29 16 23 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 24 O -0.56 -17.04 12.09 -148.98 -1.80 -18.84 16 25 H 0.06 1.73 7.22 -2.39 -0.02 1.71 16 26 H 0.08 1.31 7.94 -2.39 -0.02 1.29 16 27 H 0.06 1.65 7.22 -2.38 -0.02 1.63 16 28 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 29 H 0.08 0.73 8.05 -2.39 -0.02 0.71 16 30 H 0.09 0.70 8.07 -2.39 -0.02 0.68 16 31 H 0.15 2.36 8.06 -2.91 -0.02 2.33 16 32 H 0.41 10.01 8.24 -92.70 -0.76 9.24 16 33 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 34 H 0.06 2.58 7.61 -2.39 -0.02 2.57 16 35 H 0.05 3.16 6.04 -2.38 -0.01 3.15 16 36 H -0.01 -0.55 8.14 -2.38 -0.02 -0.57 16 37 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 38 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 39 H 0.08 2.78 7.93 -2.39 -0.02 2.76 16 40 H 0.39 8.79 9.08 -74.05 -0.67 8.12 16 Total: -1.00 -72.71 323.61 0.39 -72.32 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: -0.39 Total: 22.88 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: 4.67 Total: 11.75 kcal Atomic # 7 Polarization: -108.70 SS G_CDS: -4.07 Total: -112.77 kcal Atomic # 8 Polarization: -39.86 SS G_CDS: -1.85 Total: -41.72 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -72.71 0.39 -72.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099657028.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.310 kcal (2) G-P(sol) polarization free energy of solvation -72.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds