Wall clock time and date at job start Mon Mar 30 2020 00:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47431 * 2 1 4 4 C 1.50700 * 109.47092 * 239.99574 * 2 1 3 5 5 H 1.08002 * 119.99770 * 239.99893 * 4 2 1 6 6 C 1.37876 * 119.99720 * 60.00211 * 4 2 1 7 7 N 1.31514 * 120.00513 * 0.02562 * 6 4 2 8 8 Si 1.86809 * 119.99651 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47037 * 59.99882 * 8 6 4 10 10 H 1.48501 * 109.46667 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47133 * 299.99829 * 8 6 4 12 12 C 1.53004 * 109.46876 * 119.99637 * 2 1 3 13 13 N 1.46499 * 109.47198 * 299.99984 * 12 2 1 14 14 C 1.34777 * 119.99665 * 180.27868 * 13 12 2 15 15 O 1.21283 * 119.99990 * 359.71991 * 14 13 12 16 16 C 1.50698 * 119.99538 * 179.72653 * 14 13 12 17 17 H 1.08998 * 109.67242 * 299.49325 * 16 14 13 18 18 C 1.53347 * 109.67308 * 178.96565 * 16 14 13 19 19 C 1.52906 * 108.68814 * 172.74527 * 18 16 14 20 20 N 1.45755 * 110.49464 * 50.72104 * 19 18 16 21 21 C 1.33352 * 124.10736 * 340.96385 * 20 19 18 22 22 O 1.21278 * 118.24384 * 182.22040 * 21 20 19 23 23 C 1.50179 * 123.50726 * 2.20108 * 21 20 19 24 24 H 1.08996 * 109.47009 * 300.00615 * 1 2 3 25 25 H 1.09004 * 109.46783 * 60.00030 * 1 2 3 26 26 H 1.08998 * 109.47156 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47011 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.46658 * 300.00048 * 3 2 1 29 29 H 1.08996 * 109.47069 * 59.99427 * 3 2 1 30 30 H 0.96999 * 120.00239 * 180.02562 * 7 6 4 31 31 H 1.09009 * 109.46730 * 179.97438 * 12 2 1 32 32 H 1.08998 * 109.46846 * 60.00315 * 12 2 1 33 33 H 0.97001 * 119.99790 * 359.97438 * 13 12 2 34 34 H 1.09004 * 109.59991 * 292.49098 * 18 16 14 35 35 H 1.09001 * 109.60459 * 52.97663 * 18 16 14 36 36 H 1.08996 * 109.28481 * 290.41701 * 19 18 16 37 37 H 1.09001 * 109.14338 * 170.93921 * 19 18 16 38 38 H 0.97002 * 117.94769 * 160.93487 * 20 19 18 39 39 H 1.08997 * 109.39698 * 222.28925 * 23 21 20 40 40 H 1.08997 * 109.40441 * 102.54902 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6992 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6035 8 14 2.3225 -1.1198 -4.0079 9 1 1.8281 -2.5200 -4.0080 10 1 1.8279 -0.4195 -5.2204 11 1 3.8075 -1.1192 -4.0077 12 6 2.0399 -0.7212 1.2493 13 7 1.5516 -0.0305 2.4454 14 6 1.8818 -0.4877 3.6695 15 8 2.5790 -1.4738 3.7808 16 6 1.3845 0.2264 4.8999 17 1 1.7539 1.2519 4.9034 18 6 1.8763 -0.5044 6.1551 19 6 1.5161 0.3334 7.3825 20 7 0.1072 0.7056 7.3507 21 6 -0.6467 0.6860 6.2510 22 8 -1.7982 1.0568 6.3378 23 6 -0.1461 0.2298 4.9106 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.1301 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 0.7090 1.1613 -3.4845 31 1 3.1300 -0.7216 1.2491 32 1 1.6766 -1.7488 1.2493 33 1 0.9942 0.7584 2.3564 34 1 1.3934 -1.4792 6.2235 35 1 2.9576 -0.6320 6.1040 36 1 2.1270 1.2360 7.3942 37 1 1.7149 -0.2479 8.2829 38 1 -0.3081 0.9847 8.1817 39 1 -0.5120 0.9062 4.1381 40 1 -0.5118 -0.7774 4.7110 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001141962283.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:10 Heat of formation + Delta-G solvation = -93.326328 kcal Electronic energy + Delta-G solvation = -21023.799450 eV Core-core repulsion = 17837.622926 eV Total energy + Delta-G solvation = -3186.176524 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.69798 -39.19460 -36.74231 -36.10942 -33.60006 -33.03186 -30.85326 -29.78810 -26.23526 -25.75293 -25.36793 -24.53195 -22.96470 -20.18599 -19.36751 -18.82925 -17.68483 -16.93861 -16.38533 -15.82239 -15.46800 -15.19640 -14.89728 -14.62720 -14.35062 -13.82206 -13.57981 -13.46427 -12.93219 -12.65705 -12.24370 -12.04063 -11.88474 -11.41593 -11.29802 -11.23022 -11.17829 -10.86544 -10.74733 -10.41273 -10.30201 -10.18900 -9.66415 -9.54219 -9.33799 -9.23075 -8.81984 -8.50346 -8.35382 -6.03706 -4.14191 2.45983 2.88851 3.06340 3.28923 3.33589 3.36346 3.56996 4.32039 4.38320 4.45090 4.57452 4.59167 5.04139 5.06471 5.10972 5.22993 5.34317 5.50528 5.60312 5.75607 5.95661 6.18965 6.28334 6.47524 6.52189 6.72742 6.79618 6.89241 6.96926 6.98679 7.07594 7.32320 7.53124 7.67289 7.97013 7.98638 8.00364 8.11936 8.35778 8.59259 8.86137 9.51829 10.97582 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.036358 B = 0.004056 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.924960 B = 6902.281768 C = 7349.328501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.055 3.945 3 C -0.131 4.131 4 C -0.508 4.508 5 H 0.057 0.943 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.893 3.107 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.131 3.869 13 N -0.713 5.713 14 C 0.510 3.490 15 O -0.549 6.549 16 C -0.113 4.113 17 H 0.103 0.897 18 C -0.117 4.117 19 C 0.110 3.890 20 N -0.722 5.722 21 C 0.525 3.475 22 O -0.556 6.556 23 C -0.128 4.128 24 H 0.006 0.994 25 H 0.086 0.914 26 H 0.027 0.973 27 H 0.026 0.974 28 H 0.086 0.914 29 H 0.006 0.994 30 H 0.261 0.739 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.398 0.602 34 H 0.079 0.921 35 H 0.096 0.904 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.399 0.601 39 H 0.108 0.892 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.869 1.584 16.772 16.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 C -0.189 4.189 4 C -0.546 4.546 5 H 0.075 0.925 6 C -0.134 4.134 7 N -0.524 5.524 8 Si 0.721 3.279 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.009 3.991 13 N -0.364 5.364 14 C 0.294 3.706 15 O -0.427 6.427 16 C -0.135 4.135 17 H 0.121 0.879 18 C -0.155 4.155 19 C -0.015 4.015 20 N -0.374 5.374 21 C 0.312 3.688 22 O -0.435 6.435 23 C -0.168 4.168 24 H 0.025 0.975 25 H 0.104 0.896 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.104 0.896 29 H 0.025 0.975 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.234 0.766 34 H 0.098 0.902 35 H 0.114 0.886 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.234 0.766 39 H 0.127 0.873 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.804 1.108 16.482 16.539 hybrid contribution 0.042 0.023 -0.614 0.616 sum 0.846 1.130 15.868 15.931 Atomic orbital electron populations 1.21833 0.97687 0.99210 1.00146 1.18362 0.92841 0.92750 0.90563 1.21834 0.98556 0.98353 1.00113 1.20934 1.31642 1.12150 0.89894 0.92512 1.24874 0.94824 0.94900 0.98839 1.69788 1.36544 1.22672 1.23374 0.86634 0.79221 0.79806 0.82202 1.20276 1.21319 1.20295 1.21746 0.98160 0.95831 0.83413 1.46355 1.52181 1.31769 1.06056 1.20262 0.80844 0.84835 0.84631 1.90679 1.38647 1.26529 1.86882 1.21468 0.95565 1.01755 0.94696 0.87890 1.21711 1.03681 0.98860 0.91227 1.21461 0.81135 0.99366 0.99512 1.45500 1.11963 1.68614 1.11331 1.20057 0.85512 0.76962 0.86237 1.90775 1.18387 1.48200 1.86087 1.21665 0.94553 1.05296 0.95259 0.97477 0.89578 0.95410 0.95449 0.89574 0.97525 0.92915 0.92652 0.92635 0.76631 0.90219 0.88566 0.91330 0.90143 0.76625 0.87321 0.87462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.89 8.08 37.16 0.30 -2.59 16 2 C 0.06 1.25 0.50 -155.66 -0.08 1.17 16 3 C -0.13 -2.87 8.08 37.16 0.30 -2.57 16 4 C -0.51 -13.06 8.01 -34.44 -0.28 -13.34 16 5 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 6 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 7 N -0.89 -23.32 9.35 55.43 0.52 -22.80 16 8 Si 0.89 20.50 29.54 -169.99 -5.02 15.48 16 9 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 12 C 0.13 2.66 4.50 -4.04 -0.02 2.64 16 13 N -0.71 -11.72 4.87 -60.29 -0.29 -12.01 16 14 C 0.51 7.80 7.14 -10.99 -0.08 7.72 16 15 O -0.55 -10.32 15.89 5.55 0.09 -10.23 16 16 C -0.11 -1.21 2.60 -91.56 -0.24 -1.45 16 17 H 0.10 0.95 8.13 -51.93 -0.42 0.53 16 18 C -0.12 -1.05 4.71 -26.60 -0.13 -1.18 16 19 C 0.11 0.70 7.17 -4.49 -0.03 0.67 16 20 N -0.72 -6.14 5.45 -61.40 -0.33 -6.48 16 21 C 0.53 6.22 7.71 -11.87 -0.09 6.13 16 22 O -0.56 -8.85 17.78 5.56 0.10 -8.75 16 23 C -0.13 -1.41 5.18 -28.10 -0.15 -1.55 16 24 H 0.01 0.12 6.86 -51.93 -0.36 -0.23 16 25 H 0.09 2.12 6.07 -51.93 -0.32 1.80 16 26 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.09 2.11 6.07 -51.93 -0.32 1.79 16 29 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 30 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 31 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.40 5.95 5.85 -40.82 -0.24 5.71 16 34 H 0.08 0.79 8.12 -51.93 -0.42 0.37 16 35 H 0.10 0.89 7.89 -51.93 -0.41 0.48 16 36 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.40 2.90 8.80 -40.82 -0.36 2.54 16 39 H 0.11 1.18 7.92 -51.93 -0.41 0.76 16 40 H 0.11 1.22 8.09 -51.93 -0.42 0.80 16 LS Contribution 318.62 15.07 4.80 4.80 Total: -1.00 -30.52 318.62 -6.82 -37.34 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -6.10 Total: 5.36 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: -0.58 Total: -2.70 kcal Atomic # 7 Polarization: -41.18 SS G_CDS: -0.11 Total: -41.29 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: 0.19 Total: -18.99 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.52 -6.82 -37.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141962283.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.990 kcal (2) G-P(sol) polarization free energy of solvation -30.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds