Wall clock time and date at job start Mon Mar 30 2020 00:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47212 * 2 1 4 4 C 1.50705 * 109.46602 * 119.99920 * 2 1 3 5 5 H 1.07993 * 120.00405 * 124.70282 * 4 2 1 6 6 C 1.37879 * 119.99729 * 304.69310 * 4 2 1 7 7 N 1.31517 * 119.99485 * 159.96999 * 6 4 2 8 8 Si 1.86802 * 120.00273 * 339.97458 * 6 4 2 9 9 H 1.48500 * 109.47181 * 275.37663 * 8 6 4 10 10 H 1.48500 * 109.47040 * 35.37875 * 8 6 4 11 11 H 1.48501 * 109.46952 * 155.37883 * 8 6 4 12 12 C 1.52995 * 109.47048 * 239.99333 * 2 1 3 13 13 N 1.46498 * 109.47033 * 60.00332 * 12 2 1 14 14 C 1.34777 * 119.99798 * 179.97438 * 13 12 2 15 15 O 1.21281 * 120.00411 * 0.02562 * 14 13 12 16 16 C 1.50697 * 119.99943 * 180.02562 * 14 13 12 17 17 H 1.08997 * 109.67863 * 59.49773 * 16 14 13 18 18 C 1.53351 * 109.67664 * 180.02562 * 16 14 13 19 19 C 1.52919 * 108.67452 * 187.26319 * 18 16 14 20 20 N 1.45753 * 110.48636 * 309.24221 * 19 18 16 21 21 C 1.33355 * 124.10873 * 19.10212 * 20 19 18 22 22 O 1.21282 * 118.24682 * 177.77233 * 21 20 19 23 23 C 1.50177 * 123.50465 * 357.73063 * 21 20 19 24 24 H 1.08997 * 109.47185 * 291.21043 * 1 2 3 25 25 H 1.09004 * 109.46488 * 51.20468 * 1 2 3 26 26 H 1.08999 * 109.47155 * 171.20009 * 1 2 3 27 27 H 1.08998 * 109.46969 * 179.97438 * 3 2 1 28 28 H 1.09009 * 109.46902 * 299.99274 * 3 2 1 29 29 H 1.08993 * 109.47641 * 59.99497 * 3 2 1 30 30 H 0.97004 * 119.99483 * 180.02562 * 7 6 4 31 31 H 1.08998 * 109.47166 * 180.02562 * 12 2 1 32 32 H 1.08998 * 109.47258 * 300.00443 * 12 2 1 33 33 H 0.96999 * 120.00176 * 0.02562 * 13 12 2 34 34 H 1.09002 * 109.59814 * 307.01566 * 18 16 14 35 35 H 1.08994 * 109.60099 * 67.34053 * 18 16 14 36 36 H 1.08999 * 109.30424 * 69.55315 * 19 18 16 37 37 H 1.08995 * 109.30017 * 188.93447 * 19 18 16 38 38 H 0.97007 * 117.94788 * 199.07702 * 20 19 18 39 39 H 1.09008 * 109.41699 * 257.48487 * 23 21 20 40 40 H 1.09001 * 109.39186 * 137.74322 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.7142 -1.5421 1.1334 6 6 1.6212 -0.2984 2.4805 7 7 1.7187 -1.1147 3.5070 8 14 0.9257 1.4193 2.7158 9 1 2.0394 2.3816 2.9126 10 1 0.1440 1.8058 1.5138 11 1 0.0407 1.4359 3.9083 12 6 2.0400 -0.7214 -1.2491 13 7 1.5517 -0.0308 -2.4453 14 6 1.8778 -0.4912 -3.6694 15 8 2.5750 -1.4773 -3.7806 16 6 1.3760 0.2195 -4.8999 17 1 1.7302 1.2503 -4.8986 18 6 1.8844 -0.5000 -6.1551 19 6 1.5178 0.3367 -7.3814 20 7 0.1034 0.6875 -7.3553 21 6 -0.6554 0.6537 -6.2592 22 8 -1.8119 1.0073 -6.3505 23 6 -0.1545 0.2003 -4.9180 24 1 -0.3633 0.3718 0.9580 25 1 -0.3632 0.6439 -0.8010 26 1 -0.3633 -1.0156 -0.1572 27 1 3.1300 1.4424 0.0005 28 1 1.6768 1.9562 -0.8901 29 1 1.6767 1.9564 0.8898 30 1 1.4291 -0.8250 4.3862 31 1 3.1300 -0.7218 -1.2489 32 1 1.6766 -1.7490 -1.2491 33 1 0.9944 0.7581 -2.3564 34 1 2.9673 -0.6118 -6.0991 35 1 1.4186 -1.4827 -6.2273 36 1 2.1150 1.2485 -7.3872 37 1 1.7305 -0.2353 -8.2845 38 1 -0.3121 0.9632 -8.1874 39 1 -0.5063 -0.8129 -4.7233 40 1 -0.5341 0.8687 -4.1451 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001141962289.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:13 Heat of formation + Delta-G solvation = -74.249998 kcal Electronic energy + Delta-G solvation = -21112.437039 eV Core-core repulsion = 17927.087727 eV Total energy + Delta-G solvation = -3185.349312 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.77724 -39.31734 -37.00349 -36.27381 -33.67762 -33.06453 -31.48459 -29.88665 -26.62090 -26.36285 -25.26142 -24.65358 -23.08435 -20.25498 -19.45796 -19.17796 -17.72924 -16.98402 -16.45973 -16.10413 -15.61104 -15.25022 -15.12339 -14.94149 -14.40578 -13.99593 -13.66775 -13.64362 -12.99323 -12.90810 -12.67863 -12.25748 -12.11547 -12.02006 -11.96610 -11.38906 -11.34799 -11.25161 -10.48452 -10.41376 -10.29170 -10.24320 -10.07227 -9.50605 -9.39634 -9.21004 -8.72873 -8.60909 -8.40178 -6.20220 -4.13648 2.39237 2.78405 3.00061 3.22124 3.30106 3.36690 3.43872 4.24625 4.33687 4.37889 4.49359 4.50153 4.96918 4.98856 5.03026 5.10419 5.25501 5.42368 5.52072 5.68208 5.76273 5.89759 6.01975 6.03465 6.33412 6.45285 6.46286 6.49328 6.60396 6.67192 6.71763 6.92344 7.01465 7.20654 7.39683 7.70344 7.82525 7.93884 8.39186 8.48324 8.87849 9.46310 10.92727 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.032011 B = 0.004436 C = 0.004127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.497389 B = 6310.072509 C = 6782.867416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.030 3.970 3 C -0.147 4.147 4 C -0.519 4.519 5 H 0.075 0.925 6 C 0.080 3.920 7 N -0.884 5.884 8 Si 0.874 3.126 9 H -0.285 1.285 10 H -0.246 1.246 11 H -0.302 1.302 12 C 0.141 3.859 13 N -0.719 5.719 14 C 0.511 3.489 15 O -0.543 6.543 16 C -0.113 4.113 17 H 0.103 0.897 18 C -0.117 4.117 19 C 0.109 3.891 20 N -0.721 5.721 21 C 0.525 3.475 22 O -0.556 6.556 23 C -0.128 4.128 24 H 0.055 0.945 25 H 0.022 0.978 26 H 0.048 0.952 27 H 0.051 0.949 28 H 0.027 0.973 29 H 0.043 0.957 30 H 0.265 0.735 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.397 0.603 34 H 0.096 0.904 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.399 0.601 39 H 0.108 0.892 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.755 5.535 -19.765 20.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.028 3.972 3 C -0.205 4.205 4 C -0.556 4.556 5 H 0.094 0.906 6 C -0.123 4.123 7 N -0.520 5.520 8 Si 0.705 3.295 9 H -0.212 1.212 10 H -0.172 1.172 11 H -0.231 1.231 12 C 0.019 3.981 13 N -0.370 5.370 14 C 0.296 3.704 15 O -0.421 6.421 16 C -0.135 4.135 17 H 0.121 0.879 18 C -0.155 4.155 19 C -0.015 4.015 20 N -0.374 5.374 21 C 0.312 3.688 22 O -0.435 6.435 23 C -0.168 4.168 24 H 0.074 0.926 25 H 0.041 0.959 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.046 0.954 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.232 0.768 34 H 0.115 0.885 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.234 0.766 39 H 0.126 0.874 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.755 4.875 -19.430 20.046 hybrid contribution -0.593 1.446 0.137 1.569 sum -1.349 6.322 -19.292 20.346 Atomic orbital electron populations 1.22300 0.97733 0.99958 0.99933 1.18701 0.92516 0.92243 0.93713 1.22364 1.01037 0.98381 0.98669 1.20657 1.29797 1.16982 0.88210 0.90643 1.24935 0.94479 0.96931 0.95998 1.70020 1.46619 1.34464 1.00884 0.87504 0.79182 0.86056 0.76711 1.21192 1.17169 1.23073 1.21538 0.98578 0.95902 0.82099 1.46353 1.52618 1.31788 1.06207 1.20253 0.80818 0.84803 0.84523 1.90699 1.38317 1.26302 1.86806 1.21476 0.95534 1.01809 0.94679 0.87883 1.21711 1.03632 0.99000 0.91168 1.21459 0.80922 0.99549 0.99546 1.45503 1.11463 1.68955 1.11461 1.20044 0.85599 0.76902 0.86252 1.90779 1.18089 1.48596 1.85996 1.21668 0.94504 1.05336 0.95272 0.92587 0.95904 0.93313 0.92952 0.95418 0.93827 0.92539 0.91972 0.91753 0.76840 0.88540 0.90114 0.91341 0.90077 0.76581 0.87381 0.87418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 7.51 37.16 0.28 -2.55 16 2 C 0.03 0.62 0.50 -155.66 -0.08 0.54 16 3 C -0.15 -2.87 7.63 37.16 0.28 -2.58 16 4 C -0.52 -13.65 8.60 -34.44 -0.30 -13.94 16 5 H 0.08 2.18 7.99 -52.49 -0.42 1.76 16 6 C 0.08 2.19 5.23 -17.82 -0.09 2.09 16 7 N -0.88 -26.05 13.96 55.43 0.77 -25.27 16 8 Si 0.87 20.53 22.98 -169.99 -3.91 16.63 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.25 -5.24 4.61 56.52 0.26 -4.98 16 11 H -0.30 -7.30 7.11 56.52 0.40 -6.89 16 12 C 0.14 2.69 4.49 -4.04 -0.02 2.67 16 13 N -0.72 -10.73 4.92 -60.30 -0.30 -11.03 16 14 C 0.51 7.24 7.13 -10.99 -0.08 7.16 16 15 O -0.54 -9.72 15.90 5.56 0.09 -9.64 16 16 C -0.11 -1.10 2.60 -91.55 -0.24 -1.34 16 17 H 0.10 0.84 8.13 -51.93 -0.42 0.41 16 18 C -0.12 -0.97 4.70 -26.59 -0.13 -1.10 16 19 C 0.11 0.63 7.17 -4.49 -0.03 0.60 16 20 N -0.72 -5.70 5.45 -61.39 -0.33 -6.03 16 21 C 0.52 5.83 7.71 -11.87 -0.09 5.74 16 22 O -0.56 -8.48 17.78 5.56 0.10 -8.38 16 23 C -0.13 -1.29 5.21 -28.10 -0.15 -1.43 16 24 H 0.06 1.20 4.03 -51.93 -0.21 0.99 16 25 H 0.02 0.37 7.11 -51.93 -0.37 0.00 16 26 H 0.05 0.97 8.12 -51.93 -0.42 0.55 16 27 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.03 0.44 6.86 -51.92 -0.36 0.08 16 29 H 0.04 0.90 2.61 -51.93 -0.14 0.77 16 30 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.40 5.16 6.02 -40.82 -0.25 4.91 16 34 H 0.10 0.82 7.90 -51.93 -0.41 0.41 16 35 H 0.08 0.75 8.12 -51.93 -0.42 0.33 16 36 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.40 2.69 8.80 -40.82 -0.36 2.33 16 39 H 0.11 1.13 8.09 -51.92 -0.42 0.71 16 40 H 0.11 1.04 7.97 -51.93 -0.41 0.62 16 LS Contribution 309.10 15.07 4.66 4.66 Total: -1.00 -32.81 309.10 -5.55 -38.36 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -6.00 Total: 4.84 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: -0.64 Total: -4.13 kcal Atomic # 7 Polarization: -42.48 SS G_CDS: 0.14 Total: -42.33 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: 0.19 Total: -18.02 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -3.91 Total: 16.63 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.81 -5.55 -38.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141962289.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.889 kcal (2) G-P(sol) polarization free energy of solvation -32.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds