Wall clock time and date at job start Mon Mar 30 2020 00:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47212 * 2 1 4 4 C 1.50705 * 109.46602 * 119.99920 * 2 1 3 5 5 H 1.07993 * 120.00405 * 124.70282 * 4 2 1 6 6 C 1.37879 * 119.99729 * 304.69310 * 4 2 1 7 7 N 1.31517 * 119.99485 * 159.96999 * 6 4 2 8 8 Si 1.86802 * 120.00273 * 339.97458 * 6 4 2 9 9 H 1.48500 * 109.47181 * 275.37663 * 8 6 4 10 10 H 1.48500 * 109.47040 * 35.37875 * 8 6 4 11 11 H 1.48501 * 109.46952 * 155.37883 * 8 6 4 12 12 C 1.52995 * 109.47048 * 239.99333 * 2 1 3 13 13 N 1.46498 * 109.47033 * 60.00332 * 12 2 1 14 14 C 1.34777 * 119.99798 * 179.97438 * 13 12 2 15 15 O 1.21281 * 120.00411 * 0.02562 * 14 13 12 16 16 C 1.50697 * 119.99943 * 180.02562 * 14 13 12 17 17 H 1.08997 * 109.67863 * 59.49773 * 16 14 13 18 18 C 1.53351 * 109.67664 * 180.02562 * 16 14 13 19 19 C 1.52919 * 108.67452 * 187.26319 * 18 16 14 20 20 N 1.45753 * 110.48636 * 309.24221 * 19 18 16 21 21 C 1.33355 * 124.10873 * 19.10212 * 20 19 18 22 22 O 1.21282 * 118.24682 * 177.77233 * 21 20 19 23 23 C 1.50177 * 123.50465 * 357.73063 * 21 20 19 24 24 H 1.08997 * 109.47185 * 291.21043 * 1 2 3 25 25 H 1.09004 * 109.46488 * 51.20468 * 1 2 3 26 26 H 1.08999 * 109.47155 * 171.20009 * 1 2 3 27 27 H 1.08998 * 109.46969 * 179.97438 * 3 2 1 28 28 H 1.09009 * 109.46902 * 299.99274 * 3 2 1 29 29 H 1.08993 * 109.47641 * 59.99497 * 3 2 1 30 30 H 0.97004 * 119.99483 * 180.02562 * 7 6 4 31 31 H 1.08998 * 109.47166 * 180.02562 * 12 2 1 32 32 H 1.08998 * 109.47258 * 300.00443 * 12 2 1 33 33 H 0.96999 * 120.00176 * 0.02562 * 13 12 2 34 34 H 1.09002 * 109.59814 * 307.01566 * 18 16 14 35 35 H 1.08994 * 109.60099 * 67.34053 * 18 16 14 36 36 H 1.08999 * 109.30424 * 69.55315 * 19 18 16 37 37 H 1.08995 * 109.30017 * 188.93447 * 19 18 16 38 38 H 0.97007 * 117.94788 * 199.07702 * 20 19 18 39 39 H 1.09008 * 109.41699 * 257.48487 * 23 21 20 40 40 H 1.09001 * 109.39186 * 137.74322 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.7142 -1.5421 1.1334 6 6 1.6212 -0.2984 2.4805 7 7 1.7187 -1.1147 3.5070 8 14 0.9257 1.4193 2.7158 9 1 2.0394 2.3816 2.9126 10 1 0.1440 1.8058 1.5138 11 1 0.0407 1.4359 3.9083 12 6 2.0400 -0.7214 -1.2491 13 7 1.5517 -0.0308 -2.4453 14 6 1.8778 -0.4912 -3.6694 15 8 2.5750 -1.4773 -3.7806 16 6 1.3760 0.2195 -4.8999 17 1 1.7302 1.2503 -4.8986 18 6 1.8844 -0.5000 -6.1551 19 6 1.5178 0.3367 -7.3814 20 7 0.1034 0.6875 -7.3553 21 6 -0.6554 0.6537 -6.2592 22 8 -1.8119 1.0073 -6.3505 23 6 -0.1545 0.2003 -4.9180 24 1 -0.3633 0.3718 0.9580 25 1 -0.3632 0.6439 -0.8010 26 1 -0.3633 -1.0156 -0.1572 27 1 3.1300 1.4424 0.0005 28 1 1.6768 1.9562 -0.8901 29 1 1.6767 1.9564 0.8898 30 1 1.4291 -0.8250 4.3862 31 1 3.1300 -0.7218 -1.2489 32 1 1.6766 -1.7490 -1.2491 33 1 0.9944 0.7581 -2.3564 34 1 2.9673 -0.6118 -6.0991 35 1 1.4186 -1.4827 -6.2273 36 1 2.1150 1.2485 -7.3872 37 1 1.7305 -0.2353 -8.2845 38 1 -0.3121 0.9632 -8.1874 39 1 -0.5063 -0.8129 -4.7233 40 1 -0.5341 0.8687 -4.1451 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001141962289.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:12 Heat of formation + Delta-G solvation = -100.802954 kcal Electronic energy + Delta-G solvation = -21113.588462 eV Core-core repulsion = 17927.087727 eV Total energy + Delta-G solvation = -3186.500735 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.67710 -40.45642 -38.47879 -37.22768 -35.05355 -34.18543 -33.24763 -30.61611 -28.00245 -27.89188 -27.03438 -25.77626 -23.94629 -21.43348 -20.90004 -20.15287 -18.65574 -18.17595 -17.85111 -17.29430 -16.93314 -16.52458 -16.32866 -16.12616 -15.26121 -15.04245 -15.00560 -14.78178 -14.44518 -14.32857 -14.19924 -13.97374 -13.67859 -12.94228 -12.83381 -12.67311 -12.39789 -12.22293 -12.03779 -11.99173 -11.98742 -11.72576 -11.35805 -11.12237 -10.60425 -10.54990 -10.34486 -10.05074 -9.97075 -8.31638 -6.28701 1.37536 1.39809 1.50943 1.56470 1.65904 2.27639 2.33790 2.36053 3.04418 3.46325 3.63524 3.73060 3.79136 4.10511 4.25258 4.26645 4.36097 4.44012 4.45506 4.65009 4.75179 4.81093 4.86344 4.87741 4.91924 4.97590 5.04347 5.10301 5.20261 5.25792 5.45958 5.58532 5.73652 5.82686 5.84577 6.30752 6.31799 6.64700 6.74858 7.18910 7.31243 7.34730 8.85550 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.032011 B = 0.004436 C = 0.004127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.497389 B = 6310.072509 C = 6782.867416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.028 3.972 3 C -0.146 4.146 4 C -0.523 4.523 5 H 0.027 0.973 6 C 0.022 3.978 7 N -0.941 5.941 8 Si 0.933 3.067 9 H -0.282 1.282 10 H -0.200 1.200 11 H -0.314 1.314 12 C 0.157 3.843 13 N -0.711 5.711 14 C 0.512 3.488 15 O -0.583 6.583 16 C -0.099 4.099 17 H 0.133 0.867 18 C -0.118 4.118 19 C 0.113 3.887 20 N -0.709 5.709 21 C 0.525 3.475 22 O -0.604 6.604 23 C -0.125 4.125 24 H 0.043 0.957 25 H 0.067 0.933 26 H 0.038 0.962 27 H 0.047 0.953 28 H 0.073 0.927 29 H 0.035 0.965 30 H 0.264 0.736 31 H 0.044 0.956 32 H 0.039 0.961 33 H 0.411 0.589 34 H 0.096 0.904 35 H 0.066 0.934 36 H 0.093 0.907 37 H 0.107 0.893 38 H 0.407 0.593 39 H 0.100 0.900 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.379 8.436 -22.598 24.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.026 3.974 3 C -0.203 4.203 4 C -0.561 4.561 5 H 0.045 0.955 6 C -0.176 4.176 7 N -0.579 5.579 8 Si 0.762 3.238 9 H -0.209 1.209 10 H -0.124 1.124 11 H -0.243 1.243 12 C 0.033 3.967 13 N -0.362 5.362 14 C 0.299 3.701 15 O -0.463 6.463 16 C -0.120 4.120 17 H 0.151 0.849 18 C -0.156 4.156 19 C -0.010 4.010 20 N -0.360 5.360 21 C 0.313 3.687 22 O -0.487 6.487 23 C -0.165 4.165 24 H 0.061 0.939 25 H 0.086 0.914 26 H 0.057 0.943 27 H 0.066 0.934 28 H 0.091 0.909 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.248 0.752 34 H 0.114 0.886 35 H 0.085 0.915 36 H 0.111 0.889 37 H 0.125 0.875 38 H 0.243 0.757 39 H 0.119 0.881 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -1.358 7.800 -22.336 23.697 hybrid contribution -0.280 0.377 0.954 1.063 sum -1.638 8.177 -21.381 22.950 Atomic orbital electron populations 1.22234 0.96241 1.00554 1.00835 1.18645 0.93574 0.93279 0.91870 1.22280 1.00962 0.96675 1.00383 1.20997 1.28418 1.15868 0.90826 0.95488 1.25812 0.95314 1.00986 0.95522 1.70174 1.49309 1.36888 1.01559 0.86545 0.78912 0.80558 0.77805 1.20876 1.12362 1.24305 1.21013 0.97402 0.94917 0.83381 1.46122 1.52850 1.32015 1.05244 1.21022 0.79652 0.84164 0.85213 1.90693 1.40092 1.28203 1.87360 1.21458 0.95207 1.02795 0.92556 0.84939 1.21728 1.03480 0.98770 0.91635 1.21624 0.79594 1.00573 0.99182 1.45498 1.12194 1.67338 1.10973 1.20122 0.85107 0.76476 0.87038 1.90765 1.20098 1.51087 1.86712 1.21634 0.94408 1.05155 0.95305 0.93854 0.91435 0.94253 0.93417 0.90861 0.94631 0.92707 0.93732 0.94282 0.75154 0.88564 0.91507 0.88900 0.87525 0.75670 0.88144 0.86510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.25 7.51 71.98 0.54 -4.71 16 2 C 0.03 1.13 0.50 -52.93 -0.03 1.10 16 3 C -0.15 -5.18 7.63 71.98 0.55 -4.63 16 4 C -0.52 -28.38 8.60 25.60 0.22 -28.16 16 5 H 0.03 1.67 7.99 -2.91 -0.02 1.64 16 6 C 0.02 1.22 5.23 84.65 0.44 1.66 16 7 N -0.94 -57.86 13.96 21.45 0.30 -57.56 16 8 Si 0.93 41.77 22.98 68.60 1.58 43.34 16 9 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 10 H -0.20 -7.51 4.61 99.48 0.46 -7.05 16 11 H -0.31 -14.57 7.11 99.48 0.71 -13.86 16 12 C 0.16 5.93 4.49 86.38 0.39 6.32 16 13 N -0.71 -19.41 4.92 -463.08 -2.28 -21.68 16 14 C 0.51 13.44 7.13 87.66 0.62 14.07 16 15 O -0.58 -20.52 15.90 -3.03 -0.05 -20.57 16 16 C -0.10 -1.59 2.60 -11.40 -0.03 -1.62 16 17 H 0.13 1.46 8.13 -2.39 -0.02 1.44 16 18 C -0.12 -1.60 4.70 30.68 0.14 -1.46 16 19 C 0.11 0.83 7.17 86.49 0.62 1.45 16 20 N -0.71 -8.75 5.45 -467.32 -2.55 -11.30 16 21 C 0.53 10.29 7.71 87.71 0.68 10.96 16 22 O -0.60 -17.43 17.78 -3.04 -0.05 -17.48 16 23 C -0.12 -2.16 5.21 29.71 0.15 -2.00 16 24 H 0.04 1.72 4.03 -2.39 -0.01 1.71 16 25 H 0.07 1.90 7.11 -2.39 -0.02 1.88 16 26 H 0.04 1.51 8.12 -2.39 -0.02 1.49 16 27 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.07 1.93 6.86 -2.38 -0.02 1.91 16 29 H 0.04 1.33 2.61 -2.39 -0.01 1.32 16 30 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 31 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.41 8.82 6.02 -92.71 -0.56 8.26 16 34 H 0.10 1.37 7.90 -2.39 -0.02 1.36 16 35 H 0.07 1.11 8.12 -2.39 -0.02 1.09 16 36 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 37 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 38 H 0.41 4.15 8.80 -92.70 -0.82 3.33 16 39 H 0.10 1.92 8.09 -2.38 -0.02 1.90 16 40 H 0.12 1.81 7.97 -2.39 -0.02 1.79 16 Total: -1.00 -76.10 309.10 0.70 -75.40 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -0.56 Total: 16.88 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: 4.30 Total: -7.03 kcal Atomic # 7 Polarization: -86.02 SS G_CDS: -4.52 Total: -90.54 kcal Atomic # 8 Polarization: -37.95 SS G_CDS: -0.10 Total: -38.05 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 1.58 Total: 43.34 kcal Total: -76.10 0.70 -75.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141962289.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.403 kcal (2) G-P(sol) polarization free energy of solvation -76.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds