Wall clock time and date at job start Mon Mar 30 2020 01:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46913 * 2 1 4 4 C 1.50693 * 109.46840 * 179.97438 * 3 2 1 5 5 O 1.20781 * 120.00548 * 0.02562 * 4 3 2 6 6 C 1.49091 * 120.00014 * 180.02562 * 4 3 2 7 7 O 1.21372 * 119.99574 * 8.40522 * 6 4 3 8 8 N 1.34778 * 120.00365 * 188.67998 * 6 4 3 9 9 C 1.47078 * 120.87776 * 7.60081 * 8 6 4 10 10 C 1.53697 * 108.27583 * 128.75672 * 9 8 6 11 11 N 1.46899 * 109.25745 * 54.07859 * 10 9 8 12 12 C 1.46903 * 111.00027 * 172.60839 * 11 10 9 13 13 C 1.50706 * 109.47175 * 294.30621 * 12 11 10 14 14 H 1.08003 * 119.99857 * 359.97438 * 13 12 11 15 15 C 1.37874 * 119.99889 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00044 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99665 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47229 * 60.00394 * 17 15 13 19 19 H 1.48503 * 109.46977 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47448 * 300.00115 * 17 15 13 21 21 C 1.46895 * 111.26996 * 296.75841 * 11 10 9 22 22 C 1.47077 * 120.88209 * 187.87720 * 8 6 4 23 23 H 1.08996 * 109.47206 * 299.99716 * 1 2 3 24 24 H 1.09002 * 109.47363 * 59.99698 * 1 2 3 25 25 H 1.09004 * 109.47313 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47087 * 240.00567 * 2 1 3 27 27 H 1.08996 * 109.47223 * 119.99875 * 2 1 3 28 28 H 1.09004 * 109.46781 * 60.00380 * 3 2 1 29 29 H 1.08994 * 109.47484 * 300.00613 * 3 2 1 30 30 H 1.08996 * 109.62853 * 248.52030 * 9 8 6 31 31 H 1.08996 * 109.63080 * 9.10509 * 9 8 6 32 32 H 1.09002 * 109.64449 * 294.07929 * 10 9 8 33 33 H 1.08997 * 109.41995 * 173.94823 * 10 9 8 34 34 H 1.09007 * 109.46777 * 54.30067 * 12 11 10 35 35 H 1.09000 * 109.47156 * 174.30315 * 12 11 10 36 36 H 0.97001 * 119.99459 * 180.02562 * 16 15 13 37 37 H 1.08999 * 109.49338 * 303.14716 * 21 11 10 38 38 H 1.08997 * 109.49427 * 183.06459 * 21 11 10 39 39 H 1.09001 * 109.62977 * 350.90174 * 22 8 6 40 40 H 1.09002 * 109.62551 * 111.48105 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5469 1.4426 0.0006 5 8 4.1509 0.3966 0.0006 6 6 4.2924 2.7337 0.0013 7 8 3.6952 3.7791 0.1550 8 7 5.6286 2.7405 -0.1742 9 6 6.3492 1.5093 -0.5324 10 6 7.2268 1.8041 -1.7592 11 7 8.0827 2.9638 -1.4753 12 6 9.0600 3.1731 -2.5519 13 6 10.0192 2.0115 -2.5924 14 1 9.9137 1.1992 -1.8885 15 6 11.0315 1.9857 -3.5282 16 7 11.1597 2.9746 -4.3857 17 14 12.2209 0.5462 -3.5778 18 1 11.4685 -0.7093 -3.8287 19 1 13.2088 0.7577 -4.6663 20 1 12.9315 0.4460 -2.2777 21 6 7.2819 4.1743 -1.2486 22 6 6.4058 3.9779 -0.0068 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8900 28 1 1.6766 1.9563 0.8901 29 1 1.6766 1.9565 -0.8899 30 1 6.9754 1.1955 0.3026 31 1 5.6336 0.7231 -0.7729 32 1 6.5934 2.0215 -2.6193 33 1 7.8500 0.9365 -1.9759 34 1 8.5387 3.2472 -3.5064 35 1 9.6125 4.0943 -2.3671 36 1 11.8716 2.9562 -5.0442 37 1 6.6477 4.3585 -2.1157 38 1 7.9450 5.0256 -1.0949 39 1 5.7276 4.8245 0.1004 40 1 7.0374 3.8968 0.8778 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001144035085.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:10 Heat of formation + Delta-G solvation = -55.635576 kcal Electronic energy + Delta-G solvation = -20761.281365 eV Core-core repulsion = 17576.739234 eV Total energy + Delta-G solvation = -3184.542130 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.93426 -38.85034 -37.59053 -34.97367 -34.24826 -32.42928 -30.84573 -29.10338 -28.31040 -25.99673 -24.29542 -23.29824 -22.08129 -21.28102 -20.20013 -19.01789 -17.06835 -16.73758 -16.40964 -16.35141 -15.30097 -15.14711 -14.77984 -14.48857 -14.32671 -13.92254 -13.83820 -13.56475 -13.32689 -12.84319 -12.53739 -12.31491 -12.06986 -11.90057 -11.48819 -11.46282 -11.29018 -11.09781 -11.04874 -10.88475 -10.76888 -10.60200 -10.56583 -9.91822 -9.32052 -9.11874 -8.61145 -8.46772 -7.35827 -6.07282 -4.09483 0.88773 2.65266 2.93353 3.31012 3.35331 3.37996 3.89619 4.38117 4.45253 4.67304 4.70703 4.81695 5.12546 5.22705 5.27041 5.28298 5.37569 5.41241 5.43474 5.54811 5.62836 5.73638 5.78405 5.83369 5.85594 5.95847 6.01127 6.22354 6.35833 6.45757 6.56061 6.92400 7.19165 7.25493 7.34842 7.72428 7.90095 7.99193 8.09952 8.45609 8.97452 9.55135 11.03515 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.028376 B = 0.003996 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.512615 B = 7005.456768 C = 7686.765305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.152 4.152 4 C 0.352 3.648 5 O -0.411 6.411 6 C 0.470 3.530 7 O -0.526 6.526 8 N -0.578 5.578 9 C 0.081 3.919 10 C 0.050 3.950 11 N -0.537 5.537 12 C 0.194 3.806 13 C -0.511 4.511 14 H 0.064 0.936 15 C 0.056 3.944 16 N -0.898 5.898 17 Si 0.899 3.101 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.276 1.276 21 C 0.041 3.959 22 C 0.111 3.889 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.108 0.892 29 H 0.107 0.893 30 H 0.078 0.922 31 H 0.119 0.881 32 H 0.023 0.977 33 H 0.099 0.901 34 H -0.009 1.009 35 H 0.032 0.968 36 H 0.262 0.738 37 H 0.027 0.973 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.599 -3.201 8.579 19.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.190 4.190 4 C 0.223 3.777 5 O -0.282 6.282 6 C 0.255 3.745 7 O -0.404 6.404 8 N -0.311 5.311 9 C -0.040 4.040 10 C -0.079 4.079 11 N -0.262 5.262 12 C 0.069 3.931 13 C -0.550 4.550 14 H 0.082 0.918 15 C -0.146 4.146 16 N -0.537 5.537 17 Si 0.727 3.273 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.201 1.201 21 C -0.088 4.088 22 C -0.011 4.011 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.126 0.874 29 H 0.125 0.875 30 H 0.096 0.904 31 H 0.136 0.864 32 H 0.042 0.958 33 H 0.117 0.883 34 H 0.009 0.991 35 H 0.050 0.950 36 H 0.072 0.928 37 H 0.046 0.954 38 H 0.102 0.898 39 H 0.109 0.891 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -17.185 -3.251 8.926 19.636 hybrid contribution 0.476 -0.351 -0.936 1.107 sum -16.709 -3.602 7.990 18.868 Atomic orbital electron populations 1.21768 0.95122 1.02000 1.02049 1.21411 0.96023 0.94741 1.03467 1.21949 0.91271 0.99916 1.05877 1.24933 0.93032 0.88270 0.71473 1.90264 1.70432 1.35046 1.32481 1.20879 0.83081 0.91038 0.79525 1.90723 1.67560 1.32862 1.49299 1.48398 1.05826 1.12185 1.64715 1.22990 0.96459 0.85818 0.98770 1.22467 0.94586 0.96891 0.94001 1.62112 1.15000 1.01814 1.47280 1.19727 0.89164 0.98035 0.86162 1.21105 1.12330 1.05695 1.15824 0.91820 1.24994 0.97730 0.96374 0.95454 1.69951 1.32936 1.31606 1.19245 0.86542 0.80638 0.82481 0.77646 1.20216 1.21353 1.20113 1.22387 0.95551 0.95237 0.95614 1.21936 0.93740 0.86257 0.99143 0.92528 0.92495 0.92352 0.91142 0.91207 0.87371 0.87537 0.90368 0.86419 0.95830 0.88290 0.99104 0.95004 0.92795 0.95445 0.89836 0.89134 0.90338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.91 37.16 0.37 -0.60 16 2 C -0.12 -0.95 5.22 -26.73 -0.14 -1.09 16 3 C -0.15 -1.34 5.29 -27.88 -0.15 -1.49 16 4 C 0.35 4.22 7.04 -29.81 -0.21 4.01 16 5 O -0.41 -5.43 12.86 5.98 0.08 -5.36 16 6 C 0.47 6.89 7.71 -11.75 -0.09 6.80 16 7 O -0.53 -8.59 16.15 5.48 0.09 -8.51 16 8 N -0.58 -9.00 3.00 -172.84 -0.52 -9.52 16 9 C 0.08 1.28 6.12 -3.36 -0.02 1.26 16 10 C 0.05 0.94 5.47 -3.46 -0.02 0.93 16 11 N -0.54 -11.32 4.62 -235.46 -1.09 -12.41 16 12 C 0.19 4.97 4.72 -4.97 -0.02 4.94 16 13 C -0.51 -14.04 8.41 -34.44 -0.29 -14.33 16 14 H 0.06 1.71 7.13 -52.48 -0.37 1.34 16 15 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 16 N -0.90 -26.42 13.29 55.43 0.74 -25.68 16 17 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 C 0.04 0.74 5.62 -3.70 -0.02 0.72 16 22 C 0.11 1.72 6.61 -3.60 -0.02 1.69 16 23 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 24 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 27 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 28 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.12 1.75 4.49 -53.90 -0.24 1.50 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.10 2.00 6.67 -51.93 -0.35 1.66 16 34 H -0.01 -0.25 8.13 -51.92 -0.42 -0.67 16 35 H 0.03 0.87 7.97 -51.93 -0.41 0.45 16 36 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.08 1.43 7.99 -51.93 -0.41 1.02 16 39 H 0.09 1.33 7.05 -51.93 -0.37 0.97 16 40 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 325.59 15.07 4.91 4.91 Total: -1.00 -30.65 325.59 -7.89 -38.54 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: -6.36 Total: -2.60 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: -0.71 Total: 4.32 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: -0.87 Total: -47.62 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: 0.17 Total: -13.86 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.65 -7.89 -38.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144035085.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.097 kcal (2) G-P(sol) polarization free energy of solvation -30.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds