Wall clock time and date at job start Mon Mar 30 2020 01:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46913 * 2 1 4 4 C 1.50693 * 109.46840 * 179.97438 * 3 2 1 5 5 O 1.20781 * 120.00548 * 0.02562 * 4 3 2 6 6 C 1.49091 * 120.00014 * 180.02562 * 4 3 2 7 7 O 1.21372 * 119.99574 * 8.40522 * 6 4 3 8 8 N 1.34778 * 120.00365 * 188.67998 * 6 4 3 9 9 C 1.47078 * 120.87776 * 7.60081 * 8 6 4 10 10 C 1.53697 * 108.27583 * 128.75672 * 9 8 6 11 11 N 1.46899 * 109.25745 * 54.07859 * 10 9 8 12 12 C 1.46903 * 111.00027 * 172.60839 * 11 10 9 13 13 C 1.50706 * 109.47175 * 294.30621 * 12 11 10 14 14 H 1.08003 * 119.99857 * 359.97438 * 13 12 11 15 15 C 1.37874 * 119.99889 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00044 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99665 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47229 * 60.00394 * 17 15 13 19 19 H 1.48503 * 109.46977 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47448 * 300.00115 * 17 15 13 21 21 C 1.46895 * 111.26996 * 296.75841 * 11 10 9 22 22 C 1.47077 * 120.88209 * 187.87720 * 8 6 4 23 23 H 1.08996 * 109.47206 * 299.99716 * 1 2 3 24 24 H 1.09002 * 109.47363 * 59.99698 * 1 2 3 25 25 H 1.09004 * 109.47313 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47087 * 240.00567 * 2 1 3 27 27 H 1.08996 * 109.47223 * 119.99875 * 2 1 3 28 28 H 1.09004 * 109.46781 * 60.00380 * 3 2 1 29 29 H 1.08994 * 109.47484 * 300.00613 * 3 2 1 30 30 H 1.08996 * 109.62853 * 248.52030 * 9 8 6 31 31 H 1.08996 * 109.63080 * 9.10509 * 9 8 6 32 32 H 1.09002 * 109.64449 * 294.07929 * 10 9 8 33 33 H 1.08997 * 109.41995 * 173.94823 * 10 9 8 34 34 H 1.09007 * 109.46777 * 54.30067 * 12 11 10 35 35 H 1.09000 * 109.47156 * 174.30315 * 12 11 10 36 36 H 0.97001 * 119.99459 * 180.02562 * 16 15 13 37 37 H 1.08999 * 109.49338 * 303.14716 * 21 11 10 38 38 H 1.08997 * 109.49427 * 183.06459 * 21 11 10 39 39 H 1.09001 * 109.62977 * 350.90174 * 22 8 6 40 40 H 1.09002 * 109.62551 * 111.48105 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5469 1.4426 0.0006 5 8 4.1509 0.3966 0.0006 6 6 4.2924 2.7337 0.0013 7 8 3.6952 3.7791 0.1550 8 7 5.6286 2.7405 -0.1742 9 6 6.3492 1.5093 -0.5324 10 6 7.2268 1.8041 -1.7592 11 7 8.0827 2.9638 -1.4753 12 6 9.0600 3.1731 -2.5519 13 6 10.0192 2.0115 -2.5924 14 1 9.9137 1.1992 -1.8885 15 6 11.0315 1.9857 -3.5282 16 7 11.1597 2.9746 -4.3857 17 14 12.2209 0.5462 -3.5778 18 1 11.4685 -0.7093 -3.8287 19 1 13.2088 0.7577 -4.6663 20 1 12.9315 0.4460 -2.2777 21 6 7.2819 4.1743 -1.2486 22 6 6.4058 3.9779 -0.0068 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8900 28 1 1.6766 1.9563 0.8901 29 1 1.6766 1.9565 -0.8899 30 1 6.9754 1.1955 0.3026 31 1 5.6336 0.7231 -0.7729 32 1 6.5934 2.0215 -2.6193 33 1 7.8500 0.9365 -1.9759 34 1 8.5387 3.2472 -3.5064 35 1 9.6125 4.0943 -2.3671 36 1 11.8716 2.9562 -5.0442 37 1 6.6477 4.3585 -2.1157 38 1 7.9450 5.0256 -1.0949 39 1 5.7276 4.8245 0.1004 40 1 7.0374 3.8968 0.8778 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001144035085.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:10 Heat of formation + Delta-G solvation = -75.824100 kcal Electronic energy + Delta-G solvation = -20762.156805 eV Core-core repulsion = 17576.739234 eV Total energy + Delta-G solvation = -3185.417570 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.05467 -40.03704 -39.01544 -36.19601 -35.31499 -34.39694 -32.26175 -30.27587 -29.64601 -27.60908 -25.54951 -24.73770 -23.63166 -22.41358 -21.36247 -20.23260 -18.51904 -18.29328 -17.84238 -17.35865 -16.75446 -16.25861 -16.09255 -16.02805 -15.67470 -15.45555 -15.22899 -14.83768 -14.35192 -14.02682 -13.95592 -13.62701 -13.11233 -13.01787 -12.93343 -12.76995 -12.64097 -12.55482 -12.36622 -12.23242 -12.18479 -12.02437 -11.78574 -11.61872 -11.33260 -10.62891 -10.25039 -9.93952 -9.12374 -8.22055 -6.32659 -0.14380 1.42188 1.45156 1.52412 1.53310 1.82604 2.39710 2.77241 3.10025 3.19464 3.63444 3.87956 3.96203 3.99335 4.09777 4.15662 4.24157 4.36281 4.44811 4.58129 4.67448 4.68708 4.76947 4.79549 4.87589 4.90909 4.96509 5.09852 5.15831 5.24001 5.27238 5.27342 5.45965 5.61373 5.86805 5.99372 6.12050 6.24770 6.52036 6.71984 6.82524 7.37372 8.89084 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.028376 B = 0.003996 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.512615 B = 7005.456768 C = 7686.765305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C -0.146 4.146 4 C 0.360 3.640 5 O -0.424 6.424 6 C 0.469 3.531 7 O -0.541 6.541 8 N -0.588 5.588 9 C 0.097 3.903 10 C 0.051 3.949 11 N -0.540 5.540 12 C 0.209 3.791 13 C -0.525 4.525 14 H 0.067 0.933 15 C 0.002 3.998 16 N -0.935 5.935 17 Si 0.971 3.029 18 H -0.266 1.266 19 H -0.285 1.285 20 H -0.267 1.267 21 C 0.042 3.958 22 C 0.120 3.880 23 H 0.063 0.937 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.123 0.877 29 H 0.118 0.882 30 H 0.083 0.917 31 H 0.133 0.867 32 H 0.014 0.986 33 H 0.085 0.915 34 H -0.041 1.041 35 H 0.008 0.992 36 H 0.265 0.735 37 H 0.017 0.983 38 H 0.087 0.913 39 H 0.101 0.899 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.763 -4.437 9.783 21.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C -0.183 4.183 4 C 0.232 3.768 5 O -0.295 6.295 6 C 0.254 3.746 7 O -0.420 6.420 8 N -0.321 5.321 9 C -0.024 4.024 10 C -0.078 4.078 11 N -0.265 5.265 12 C 0.083 3.917 13 C -0.563 4.563 14 H 0.086 0.914 15 C -0.196 4.196 16 N -0.576 5.576 17 Si 0.795 3.205 18 H -0.191 1.191 19 H -0.210 1.210 20 H -0.192 1.192 21 C -0.087 4.087 22 C -0.002 4.002 23 H 0.082 0.918 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.141 0.859 29 H 0.136 0.864 30 H 0.101 0.899 31 H 0.150 0.850 32 H 0.032 0.968 33 H 0.103 0.897 34 H -0.023 1.023 35 H 0.026 0.974 36 H 0.073 0.927 37 H 0.035 0.965 38 H 0.106 0.894 39 H 0.120 0.880 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -18.383 -4.490 10.152 21.474 hybrid contribution 0.778 0.099 -1.309 1.526 sum -17.605 -4.391 8.843 20.184 Atomic orbital electron populations 1.21756 0.93712 1.02570 1.02671 1.21403 0.97178 0.93892 1.02941 1.22024 0.88374 1.00886 1.07037 1.25096 0.94209 0.86727 0.70755 1.90250 1.70907 1.34967 1.33405 1.21453 0.82576 0.92034 0.78497 1.90713 1.67700 1.33800 1.49746 1.48494 1.06461 1.11918 1.65228 1.22851 0.96202 0.86237 0.97138 1.22467 0.94332 0.95437 0.95553 1.62041 1.15752 1.03728 1.45013 1.19378 0.89668 0.96597 0.86081 1.21430 1.12780 1.06184 1.15943 0.91448 1.25930 0.99592 0.99192 0.94918 1.70085 1.33790 1.33699 1.20001 0.85416 0.78166 0.79051 0.77882 1.19060 1.21050 1.19222 1.22453 0.95523 0.94103 0.96632 1.21847 0.93632 0.86934 0.97838 0.91756 0.92036 0.91870 0.91906 0.91579 0.85874 0.86369 0.89882 0.85013 0.96822 0.89703 1.02299 0.97405 0.92657 0.96459 0.89446 0.88038 0.89231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.91 71.98 0.71 -0.81 16 2 C -0.12 -1.60 5.22 30.60 0.16 -1.44 16 3 C -0.15 -2.20 5.29 29.85 0.16 -2.04 16 4 C 0.36 7.91 7.04 28.60 0.20 8.11 16 5 O -0.42 -10.39 12.86 -1.51 -0.02 -10.41 16 6 C 0.47 12.91 7.71 87.16 0.67 13.58 16 7 O -0.54 -16.64 16.15 -3.32 -0.05 -16.69 16 8 N -0.59 -17.52 3.00 -819.08 -2.46 -19.98 16 9 C 0.10 2.97 6.12 86.50 0.53 3.50 16 10 C 0.05 1.96 5.47 86.54 0.47 2.43 16 11 N -0.54 -23.17 4.62 -898.87 -4.15 -27.32 16 12 C 0.21 11.10 4.72 85.56 0.40 11.50 16 13 C -0.53 -29.33 8.41 25.60 0.22 -29.11 16 14 H 0.07 3.64 7.13 -2.91 -0.02 3.62 16 15 C 0.00 0.10 5.46 84.65 0.46 0.56 16 16 N -0.94 -56.14 13.29 21.45 0.28 -55.86 16 17 Si 0.97 43.71 29.54 68.60 2.03 45.73 16 18 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 19 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 20 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 21 C 0.04 1.51 5.62 86.38 0.49 1.99 16 22 C 0.12 3.55 6.61 86.35 0.57 4.12 16 23 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 24 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 25 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.06 0.96 8.10 -2.39 -0.02 0.94 16 27 H 0.07 0.96 8.10 -2.39 -0.02 0.94 16 28 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 31 H 0.13 3.72 4.49 -33.65 -0.15 3.56 16 32 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.08 3.48 6.67 -2.39 -0.02 3.46 16 34 H -0.04 -2.38 8.13 -2.38 -0.02 -2.39 16 35 H 0.01 0.45 7.97 -2.39 -0.02 0.43 16 36 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 37 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.09 3.04 7.99 -2.39 -0.02 3.03 16 39 H 0.10 2.83 7.05 -2.39 -0.02 2.82 16 40 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 Total: -1.00 -65.75 325.59 1.55 -64.20 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: 0.87 Total: 7.92 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: 5.05 Total: 12.41 kcal Atomic # 7 Polarization: -96.83 SS G_CDS: -6.33 Total: -103.15 kcal Atomic # 8 Polarization: -27.03 SS G_CDS: -0.07 Total: -27.10 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Total: -65.75 1.55 -64.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144035085.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.622 kcal (2) G-P(sol) polarization free energy of solvation -65.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds