Wall clock time and date at job start Mon Mar 30 2020 01:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50698 * 120.00120 * 2 1 4 4 H 1.08992 * 110.67488 * 357.03857 * 3 2 1 5 5 O 1.44384 * 110.61717 * 234.07361 * 3 2 1 6 6 C 1.43745 * 106.97063 * 201.43689 * 5 3 2 7 7 C 1.54099 * 107.29578 * 26.52149 * 6 5 3 8 8 C 1.54809 * 104.18544 * 357.96323 * 7 6 5 9 9 H 1.08995 * 110.90529 * 97.35719 * 8 7 6 10 10 C 1.50708 * 110.90496 * 220.92497 * 8 7 6 11 11 O 1.21277 * 119.99772 * 118.54977 * 10 8 7 12 12 N 1.34774 * 119.99715 * 298.54752 * 10 8 7 13 13 C 1.46505 * 119.99513 * 180.02562 * 12 10 8 14 14 C 1.53003 * 109.47060 * 179.97438 * 13 12 10 15 15 C 1.52996 * 109.47301 * 179.97438 * 14 13 12 16 16 N 1.46498 * 109.47059 * 179.97438 * 15 14 13 17 17 C 1.36943 * 119.99752 * 179.72430 * 16 15 14 18 18 H 1.08002 * 119.99793 * 0.27665 * 17 16 15 19 19 C 1.38811 * 120.00012 * 180.27737 * 17 16 15 20 20 N 1.31624 * 119.99698 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00072 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47213 * 60.00246 * 21 19 17 23 23 H 1.48502 * 109.47317 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47081 * 299.99875 * 21 19 17 25 25 H 1.08003 * 119.99945 * 359.97438 * 1 2 3 26 26 H 1.08003 * 119.99905 * 180.02562 * 1 2 3 27 27 H 1.08003 * 119.99945 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.87966 * 267.08736 * 6 5 3 29 29 H 1.09009 * 110.00033 * 146.01322 * 6 5 3 30 30 H 1.09003 * 110.48289 * 239.29120 * 7 6 5 31 31 H 1.08994 * 110.49341 * 116.64489 * 7 6 5 32 32 H 0.96995 * 120.00583 * 0.02562 * 12 10 8 33 33 H 1.08990 * 109.47414 * 59.99970 * 13 12 10 34 34 H 1.09002 * 109.47037 * 299.99282 * 13 12 10 35 35 H 1.09004 * 109.47038 * 59.99597 * 14 13 12 36 36 H 1.09000 * 109.46939 * 300.00250 * 14 13 12 37 37 H 1.09004 * 109.47066 * 60.00027 * 15 14 13 38 38 H 1.08994 * 109.46974 * 300.00175 * 15 14 13 39 39 H 0.97001 * 120.00384 * 0.02562 * 16 15 14 40 40 H 0.96999 * 119.99739 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3740 2.1475 -0.0527 5 8 3.0044 1.3489 -1.0943 6 6 4.0001 2.3277 -0.7526 7 6 4.0583 2.4044 0.7854 8 6 2.9647 1.4149 1.2562 9 1 3.3985 0.4478 1.5102 10 6 2.1950 1.9793 2.4225 11 8 1.0027 2.1776 2.3232 12 7 2.8317 2.2635 3.5759 13 6 2.0833 2.8115 4.7099 14 6 3.0349 3.0415 5.8857 15 6 2.2535 3.6144 7.0697 16 7 3.1645 3.8340 8.1957 17 6 2.6882 4.3501 9.3713 18 1 1.6400 4.5911 9.4698 19 6 3.5524 4.5635 10.4364 20 7 4.8300 4.2703 10.3161 21 14 2.9025 5.2669 12.0402 22 1 1.8667 4.3589 12.5952 23 1 4.0183 5.3981 13.0114 24 1 2.3061 6.6034 11.7888 25 1 -0.5400 0.9353 0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 3.7213 3.2986 -1.1619 29 1 4.9708 2.0249 -1.1455 30 1 3.8309 3.4146 1.1258 31 1 5.0377 2.0906 1.1464 32 1 3.7853 2.1052 3.6553 33 1 1.3046 2.1084 5.0053 34 1 1.6272 3.7584 4.4206 35 1 3.8139 3.7444 5.5906 36 1 3.4906 2.0945 6.1747 37 1 1.4742 2.9117 7.3650 38 1 1.7980 4.5614 6.7803 39 1 4.1060 3.6178 8.1072 40 1 5.4338 4.4191 11.0605 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166983149.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:48 Heat of formation + Delta-G solvation = -59.659455 kcal Electronic energy + Delta-G solvation = -19853.391124 eV Core-core repulsion = 16668.674505 eV Total energy + Delta-G solvation = -3184.716619 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.68411 -38.77766 -36.08602 -34.47032 -34.02617 -32.85318 -31.77865 -29.61069 -28.76229 -25.55330 -23.73188 -22.69301 -22.23754 -21.24662 -20.34812 -20.08426 -17.76302 -16.98374 -16.62505 -16.17813 -16.01339 -15.53580 -15.18367 -14.51866 -14.36647 -13.99905 -13.87642 -13.58832 -13.29616 -13.08952 -12.75097 -12.57757 -12.08632 -11.82395 -11.69246 -11.36404 -11.19634 -10.99393 -10.93815 -10.81158 -10.64730 -10.16703 -10.09677 -9.91900 -9.73272 -9.60218 -9.12686 -8.90034 -6.96452 -5.79659 -3.08794 1.95367 2.46290 2.98997 3.43024 3.47109 3.48323 3.67724 4.11030 4.24694 4.43426 4.56885 4.69610 4.78826 4.86676 4.98897 5.06937 5.10375 5.26224 5.35957 5.37958 5.49744 5.54836 5.57981 5.59692 5.69942 5.93602 6.01622 6.14916 6.28167 6.34793 6.38904 6.43083 6.61037 6.74979 6.79267 7.37212 7.67296 8.07177 8.39397 9.50403 10.07153 10.41815 11.43314 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.041606 B = 0.002724 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.819802 B =10274.790945 C =10737.710879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.158 4.158 3 C 0.127 3.873 4 H 0.087 0.913 5 O -0.370 6.370 6 C 0.048 3.952 7 C -0.149 4.149 8 C -0.139 4.139 9 H 0.114 0.886 10 C 0.523 3.477 11 O -0.535 6.535 12 N -0.725 5.725 13 C 0.122 3.878 14 C -0.138 4.138 15 C 0.156 3.844 16 N -0.734 5.734 17 C -0.242 4.242 18 H 0.071 0.929 19 C -0.014 4.014 20 N -0.935 5.935 21 Si 0.909 3.091 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.285 1.285 25 H 0.102 0.898 26 H 0.103 0.897 27 H 0.114 0.886 28 H 0.062 0.938 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.401 0.599 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.022 0.978 38 H 0.021 0.979 39 H 0.384 0.616 40 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.431 -7.086 -22.766 23.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.176 4.176 3 C 0.070 3.930 4 H 0.105 0.895 5 O -0.289 6.289 6 C -0.029 4.029 7 C -0.187 4.187 8 C -0.161 4.161 9 H 0.132 0.868 10 C 0.308 3.692 11 O -0.412 6.412 12 N -0.376 5.376 13 C -0.002 4.002 14 C -0.176 4.176 15 C 0.028 3.972 16 N -0.378 5.378 17 C -0.373 4.373 18 H 0.089 0.911 19 C -0.210 4.210 20 N -0.584 5.584 21 Si 0.740 3.260 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.212 1.212 25 H 0.120 0.880 26 H 0.121 0.879 27 H 0.131 0.869 28 H 0.080 0.920 29 H 0.107 0.893 30 H 0.101 0.899 31 H 0.108 0.892 32 H 0.235 0.765 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.039 0.961 38 H 0.039 0.961 39 H 0.217 0.783 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.417 -6.985 -22.879 24.043 hybrid contribution 0.629 0.360 1.271 1.463 sum -1.787 -6.625 -21.608 22.671 Atomic orbital electron populations 1.23917 0.95731 1.02358 0.97076 1.22545 0.95751 0.96766 1.02570 1.21980 0.90428 0.97240 0.83382 0.89546 1.88931 1.38502 1.60324 1.41146 1.23138 0.92966 0.92966 0.93839 1.22981 0.99147 1.00084 0.96461 1.22908 0.97033 1.01265 0.94893 0.86828 1.20129 0.87741 0.77922 0.83427 1.90712 1.14931 1.52778 1.82786 1.46084 1.12698 1.65552 1.13254 1.21382 0.94831 0.99046 0.84915 1.21946 0.98748 1.02051 0.94830 1.20516 0.92917 0.96914 0.86829 1.42331 1.07781 1.77486 1.10213 1.19205 0.93754 1.34262 0.90047 0.91137 1.24755 0.95553 1.02201 0.98500 1.69651 1.02513 1.54301 1.31900 0.86235 0.77466 0.78957 0.83343 1.21200 1.21644 1.21212 0.87984 0.87921 0.86852 0.91989 0.89344 0.89850 0.89241 0.76494 0.91287 0.91313 0.91303 0.91279 0.96052 0.96070 0.78302 0.93429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 14.33 29.01 0.42 -1.05 16 2 C -0.16 -1.58 9.24 -36.03 -0.33 -1.91 16 3 C 0.13 1.32 2.73 -26.83 -0.07 1.25 16 4 H 0.09 1.01 7.24 -51.93 -0.38 0.63 16 5 O -0.37 -3.89 11.21 -35.23 -0.39 -4.28 16 6 C 0.05 0.36 7.70 37.73 0.29 0.65 16 7 C -0.15 -1.04 6.55 -25.20 -0.16 -1.21 16 8 C -0.14 -1.26 2.94 -89.76 -0.26 -1.52 16 9 H 0.11 0.88 8.05 -51.93 -0.42 0.46 16 10 C 0.52 6.18 7.05 -10.98 -0.08 6.10 16 11 O -0.54 -8.24 15.80 5.56 0.09 -8.15 16 12 N -0.72 -7.87 5.50 -60.29 -0.33 -8.20 16 13 C 0.12 1.60 5.67 -4.04 -0.02 1.58 16 14 C -0.14 -2.04 5.44 -26.73 -0.15 -2.19 16 15 C 0.16 3.08 6.26 -4.04 -0.03 3.06 16 16 N -0.73 -18.57 5.60 -59.91 -0.34 -18.91 16 17 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 18 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 19 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 20 N -0.94 -28.21 13.06 55.49 0.72 -27.49 16 21 Si 0.91 22.41 29.55 -169.99 -5.02 17.38 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 25 H 0.10 1.02 7.87 -52.48 -0.41 0.61 16 26 H 0.10 0.79 8.06 -52.48 -0.42 0.37 16 27 H 0.11 0.99 8.06 -52.48 -0.42 0.56 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.09 0.52 8.14 -51.92 -0.42 0.09 16 30 H 0.08 0.61 7.85 -51.93 -0.41 0.20 16 31 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.40 3.38 8.47 -40.82 -0.35 3.03 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.38 10.07 7.67 -40.82 -0.31 9.75 16 40 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 338.14 15.07 5.10 5.10 Total: -1.00 -33.13 338.14 -7.29 -40.42 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -6.47 Total: 6.83 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: -0.65 Total: -2.71 kcal Atomic # 7 Polarization: -54.65 SS G_CDS: 0.06 Total: -54.60 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: -0.31 Total: -12.43 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.13 -7.29 -40.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166983149.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.235 kcal (2) G-P(sol) polarization free energy of solvation -33.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds