Wall clock time and date at job start Mon Mar 30 2020 00:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46782 * 2 1 4 4 C 1.53004 * 109.47097 * 180.02562 * 3 2 1 5 5 N 1.46492 * 109.47210 * 179.97438 * 4 3 2 6 6 C 1.37097 * 120.00022 * 264.50987 * 5 4 3 7 7 H 1.08003 * 119.99631 * 144.27383 * 6 5 4 8 8 C 1.38950 * 120.00337 * 324.27826 * 6 5 4 9 9 N 1.31414 * 119.99505 * 337.70465 * 8 6 5 10 10 Si 1.86794 * 120.00183 * 157.70747 * 8 6 5 11 11 H 1.48498 * 109.47226 * 60.00173 * 10 8 6 12 12 H 1.48506 * 109.47175 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.47408 * 299.99905 * 10 8 6 14 14 C 1.34774 * 120.00197 * 84.51468 * 5 4 3 15 15 O 1.21296 * 119.99904 * 3.65053 * 14 5 4 16 16 C 1.50702 * 120.00204 * 183.65689 * 14 5 4 17 17 H 1.09005 * 110.85725 * 307.99864 * 16 14 5 18 18 C 1.54618 * 110.97266 * 71.79613 * 16 14 5 19 19 C 1.51275 * 104.19948 * 93.32229 * 18 16 14 20 20 O 1.21290 * 124.94439 * 196.23889 * 19 18 16 21 21 N 1.34419 * 110.11798 * 16.24878 * 19 18 16 22 22 C 1.46502 * 124.35339 * 180.40815 * 21 19 18 23 23 C 1.46768 * 111.29779 * 0.67839 * 21 19 18 24 24 H 1.09001 * 109.47272 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47529 * 299.99864 * 1 2 3 26 26 H 1.09004 * 109.47376 * 59.99875 * 1 2 3 27 27 H 1.08995 * 109.47090 * 240.00337 * 2 1 3 28 28 H 1.08993 * 109.47279 * 119.99674 * 2 1 3 29 29 H 1.08994 * 109.47553 * 60.00226 * 3 2 1 30 30 H 1.08999 * 109.47348 * 299.99735 * 3 2 1 31 31 H 1.08998 * 109.47301 * 59.99445 * 4 3 2 32 32 H 1.08999 * 109.46678 * 299.99990 * 4 3 2 33 33 H 0.97003 * 119.99645 * 179.97438 * 9 8 6 34 34 H 1.09006 * 110.48683 * 334.64123 * 18 16 14 35 35 H 1.09003 * 110.48701 * 212.00124 * 18 16 14 36 36 H 1.08995 * 109.46812 * 0.02610 * 22 21 19 37 37 H 1.08999 * 109.46784 * 120.02939 * 22 21 19 38 38 H 1.09001 * 109.47173 * 240.02975 * 22 21 19 39 39 H 1.09002 * 110.24435 * 101.70814 * 23 21 19 40 40 H 1.08993 * 110.24590 * 223.71207 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0582 2.8238 -0.0013 6 6 4.3933 3.4319 -1.1834 7 1 4.1977 4.4848 -1.3234 8 6 4.9843 2.6936 -2.2014 9 7 5.6157 1.5757 -1.9209 10 14 4.8815 3.2901 -3.9686 11 1 5.5195 4.6266 -4.0778 12 1 5.5870 2.3313 -4.8565 13 1 3.4569 3.3868 -4.3763 14 6 4.1781 3.4967 1.1603 15 8 3.9452 2.9382 2.2115 16 6 4.6014 4.9430 1.1531 17 1 5.5166 5.0767 0.5762 18 6 3.4699 5.8481 0.6134 19 6 2.7269 6.2928 1.8539 20 8 1.6167 6.7811 1.8611 21 7 3.4763 6.0682 2.9470 22 6 3.0541 6.3749 4.3159 23 6 4.7743 5.4822 2.5924 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8899 29 1 1.6766 1.9564 0.8899 30 1 1.6766 1.9564 -0.8900 31 1 3.9330 0.9289 -0.8908 32 1 3.9336 0.9287 0.8891 33 1 6.0280 1.0601 -2.6316 34 1 2.8099 5.2825 -0.0444 35 1 3.8865 6.7083 0.0894 36 1 2.0530 6.8055 4.2995 37 1 3.0463 5.4594 4.9074 38 1 3.7491 7.0880 4.7593 39 1 5.5529 6.2445 2.6215 40 1 5.0184 4.6664 3.2728 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178521673.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:33 Heat of formation + Delta-G solvation = -77.578448 kcal Electronic energy + Delta-G solvation = -21645.829851 eV Core-core repulsion = 18460.336206 eV Total energy + Delta-G solvation = -3185.493645 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.25973 -38.34023 -36.00576 -35.10913 -34.01858 -32.43465 -31.52088 -28.55861 -27.18446 -26.38960 -24.99291 -23.50721 -21.57919 -20.41151 -19.17777 -19.05120 -17.33705 -16.47551 -15.92191 -15.36044 -15.00492 -14.76151 -14.56937 -14.17436 -14.03266 -13.35024 -13.16278 -13.00351 -12.88101 -12.31688 -12.16263 -12.08180 -11.92860 -11.68019 -11.55341 -11.35251 -11.20141 -10.88205 -10.77946 -10.61693 -10.50846 -10.38721 -10.23113 -9.75160 -9.40409 -9.13776 -8.49515 -8.37084 -7.58918 -6.46846 -4.13958 2.96581 3.06863 3.16958 3.19481 3.40434 3.75508 4.03072 4.54424 4.77509 4.88093 5.04927 5.41465 5.42935 5.48317 5.50552 5.59159 5.65977 5.72216 5.84703 5.88893 6.02269 6.06173 6.23567 6.24274 6.31423 6.37956 6.41877 6.45705 6.58874 6.70485 6.81845 6.83055 7.08873 7.30559 7.41060 7.44027 7.85977 8.28340 8.53677 8.98981 9.42901 9.86441 10.54966 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.014202 B = 0.007569 C = 0.005930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.080672 B = 3698.478684 C = 4720.743455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.129 4.129 4 C 0.118 3.882 5 N -0.432 5.432 6 C -0.348 4.348 7 H 0.094 0.906 8 C 0.048 3.952 9 N -0.853 5.853 10 Si 0.910 3.090 11 H -0.271 1.271 12 H -0.284 1.284 13 H -0.272 1.272 14 C 0.474 3.526 15 O -0.601 6.601 16 C -0.103 4.103 17 H 0.118 0.882 18 C -0.141 4.141 19 C 0.520 3.480 20 O -0.548 6.548 21 N -0.616 5.616 22 C 0.097 3.903 23 C 0.117 3.883 24 H 0.047 0.953 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.103 0.897 32 H 0.052 0.948 33 H 0.271 0.729 34 H 0.110 0.890 35 H 0.105 0.895 36 H 0.077 0.923 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.069 0.931 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.146 3.527 3.332 4.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.168 4.168 4 C -0.006 4.006 5 N -0.148 5.148 6 C -0.476 4.476 7 H 0.111 0.889 8 C -0.159 4.159 9 N -0.489 5.489 10 Si 0.736 3.264 11 H -0.196 1.196 12 H -0.209 1.209 13 H -0.197 1.197 14 C 0.262 3.738 15 O -0.487 6.487 16 C -0.124 4.124 17 H 0.136 0.864 18 C -0.181 4.181 19 C 0.308 3.692 20 O -0.427 6.427 21 N -0.350 5.350 22 C -0.046 4.046 23 C -0.006 4.006 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.121 0.879 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.129 0.871 35 H 0.123 0.877 36 H 0.096 0.904 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.737 3.331 3.811 5.351 hybrid contribution 0.141 0.180 -1.016 1.041 sum -1.596 3.510 2.795 4.762 Atomic orbital electron populations 1.21759 0.96604 1.00681 1.01544 1.21418 0.95023 0.97659 1.01569 1.21918 0.97865 0.95601 1.01380 1.21384 0.91013 0.84801 1.03399 1.43384 1.54683 1.11884 1.04880 1.19456 1.40656 0.96295 0.91163 0.88889 1.25334 0.93903 0.96323 1.00379 1.69966 1.29414 1.15860 1.33645 0.86269 0.78844 0.78836 0.82421 1.19603 1.20908 1.19694 1.19963 0.81610 0.88136 0.84058 1.90528 1.56457 1.70258 1.31437 1.22033 1.00574 0.94285 0.95543 0.86377 1.22297 0.98458 1.00785 0.96552 1.21034 0.85029 0.76772 0.86349 1.90656 1.19050 1.46020 1.86961 1.48058 1.17938 1.62488 1.06508 1.21472 1.00798 1.00590 0.81698 1.22071 0.84065 0.97647 0.96857 0.93400 0.93087 0.93004 0.92245 0.92421 0.92955 0.92305 0.87905 0.92927 0.91886 0.87138 0.87678 0.90434 0.92088 0.92525 0.91261 0.89022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.91 37.16 0.37 -1.79 16 2 C -0.12 -2.01 5.93 -26.73 -0.16 -2.17 16 3 C -0.13 -2.62 5.50 -26.73 -0.15 -2.77 16 4 C 0.12 2.72 4.92 -4.04 -0.02 2.70 16 5 N -0.43 -10.24 2.54 -114.81 -0.29 -10.54 16 6 C -0.35 -8.17 8.16 -14.93 -0.12 -8.29 16 7 H 0.09 2.04 5.84 -52.48 -0.31 1.73 16 8 C 0.05 1.13 4.89 -17.47 -0.09 1.04 16 9 N -0.85 -21.38 11.47 55.50 0.64 -20.75 16 10 Si 0.91 18.46 29.61 -169.99 -5.03 13.42 16 11 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 12 H -0.28 -5.81 7.11 56.52 0.40 -5.40 16 13 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 14 C 0.47 10.83 6.86 -10.99 -0.08 10.75 16 15 O -0.60 -15.09 15.25 5.54 0.08 -15.01 16 16 C -0.10 -1.87 2.59 -90.04 -0.23 -2.10 16 17 H 0.12 2.02 7.85 -51.93 -0.41 1.62 16 18 C -0.14 -2.46 5.37 -26.75 -0.14 -2.60 16 19 C 0.52 9.92 8.02 -10.86 -0.09 9.83 16 20 O -0.55 -12.01 17.35 5.55 0.10 -11.92 16 21 N -0.62 -10.35 3.33 -180.17 -0.60 -10.95 16 22 C 0.10 1.32 11.14 59.85 0.67 1.98 16 23 C 0.12 1.85 6.66 -3.02 -0.02 1.83 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.10 2.51 5.49 -51.93 -0.29 2.22 16 32 H 0.05 1.28 7.54 -51.93 -0.39 0.88 16 33 H 0.27 6.45 8.31 -40.82 -0.34 6.11 16 34 H 0.11 2.13 6.92 -51.93 -0.36 1.77 16 35 H 0.11 1.52 8.14 -51.93 -0.42 1.10 16 36 H 0.08 1.09 7.53 -51.93 -0.39 0.70 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.09 1.56 7.11 -51.93 -0.37 1.19 16 LS Contribution 326.99 15.07 4.93 4.93 Total: -1.00 -29.63 326.99 -6.53 -36.16 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -6.30 Total: 6.23 kcal Atomic # 6 Polarization: 8.48 SS G_CDS: -0.06 Total: 8.42 kcal Atomic # 7 Polarization: -41.98 SS G_CDS: -0.26 Total: -42.24 kcal Atomic # 8 Polarization: -27.10 SS G_CDS: 0.18 Total: -26.92 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.03 Total: 13.42 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.63 -6.53 -36.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178521673.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.418 kcal (2) G-P(sol) polarization free energy of solvation -29.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds