Wall clock time and date at job start Mon Mar 30 2020 00:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46782 * 2 1 4 4 C 1.53004 * 109.47097 * 180.02562 * 3 2 1 5 5 N 1.46492 * 109.47210 * 179.97438 * 4 3 2 6 6 C 1.37097 * 120.00022 * 264.50987 * 5 4 3 7 7 H 1.08003 * 119.99631 * 144.27383 * 6 5 4 8 8 C 1.38950 * 120.00337 * 324.27826 * 6 5 4 9 9 N 1.31414 * 119.99505 * 337.70465 * 8 6 5 10 10 Si 1.86794 * 120.00183 * 157.70747 * 8 6 5 11 11 H 1.48498 * 109.47226 * 60.00173 * 10 8 6 12 12 H 1.48506 * 109.47175 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.47408 * 299.99905 * 10 8 6 14 14 C 1.34774 * 120.00197 * 84.51468 * 5 4 3 15 15 O 1.21296 * 119.99904 * 3.65053 * 14 5 4 16 16 C 1.50702 * 120.00204 * 183.65689 * 14 5 4 17 17 H 1.09005 * 110.85725 * 307.99864 * 16 14 5 18 18 C 1.54618 * 110.97266 * 71.79613 * 16 14 5 19 19 C 1.51275 * 104.19948 * 93.32229 * 18 16 14 20 20 O 1.21290 * 124.94439 * 196.23889 * 19 18 16 21 21 N 1.34419 * 110.11798 * 16.24878 * 19 18 16 22 22 C 1.46502 * 124.35339 * 180.40815 * 21 19 18 23 23 C 1.46768 * 111.29779 * 0.67839 * 21 19 18 24 24 H 1.09001 * 109.47272 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47529 * 299.99864 * 1 2 3 26 26 H 1.09004 * 109.47376 * 59.99875 * 1 2 3 27 27 H 1.08995 * 109.47090 * 240.00337 * 2 1 3 28 28 H 1.08993 * 109.47279 * 119.99674 * 2 1 3 29 29 H 1.08994 * 109.47553 * 60.00226 * 3 2 1 30 30 H 1.08999 * 109.47348 * 299.99735 * 3 2 1 31 31 H 1.08998 * 109.47301 * 59.99445 * 4 3 2 32 32 H 1.08999 * 109.46678 * 299.99990 * 4 3 2 33 33 H 0.97003 * 119.99645 * 179.97438 * 9 8 6 34 34 H 1.09006 * 110.48683 * 334.64123 * 18 16 14 35 35 H 1.09003 * 110.48701 * 212.00124 * 18 16 14 36 36 H 1.08995 * 109.46812 * 0.02610 * 22 21 19 37 37 H 1.08999 * 109.46784 * 120.02939 * 22 21 19 38 38 H 1.09001 * 109.47173 * 240.02975 * 22 21 19 39 39 H 1.09002 * 110.24435 * 101.70814 * 23 21 19 40 40 H 1.08993 * 110.24590 * 223.71207 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0582 2.8238 -0.0013 6 6 4.3933 3.4319 -1.1834 7 1 4.1977 4.4848 -1.3234 8 6 4.9843 2.6936 -2.2014 9 7 5.6157 1.5757 -1.9209 10 14 4.8815 3.2901 -3.9686 11 1 5.5195 4.6266 -4.0778 12 1 5.5870 2.3313 -4.8565 13 1 3.4569 3.3868 -4.3763 14 6 4.1781 3.4967 1.1603 15 8 3.9452 2.9382 2.2115 16 6 4.6014 4.9430 1.1531 17 1 5.5166 5.0767 0.5762 18 6 3.4699 5.8481 0.6134 19 6 2.7269 6.2928 1.8539 20 8 1.6167 6.7811 1.8611 21 7 3.4763 6.0682 2.9470 22 6 3.0541 6.3749 4.3159 23 6 4.7743 5.4822 2.5924 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8899 29 1 1.6766 1.9564 0.8899 30 1 1.6766 1.9564 -0.8900 31 1 3.9330 0.9289 -0.8908 32 1 3.9336 0.9287 0.8891 33 1 6.0280 1.0601 -2.6316 34 1 2.8099 5.2825 -0.0444 35 1 3.8865 6.7083 0.0894 36 1 2.0530 6.8055 4.2995 37 1 3.0463 5.4594 4.9074 38 1 3.7491 7.0880 4.7593 39 1 5.5529 6.2445 2.6215 40 1 5.0184 4.6664 3.2728 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178521673.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:33 Heat of formation + Delta-G solvation = -95.203467 kcal Electronic energy + Delta-G solvation = -21646.594129 eV Core-core repulsion = 18460.336206 eV Total energy + Delta-G solvation = -3186.257923 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.75433 -40.04999 -37.58200 -36.79442 -35.61103 -33.86930 -33.26528 -30.11026 -28.58030 -27.65599 -26.79768 -25.02108 -23.07050 -21.97606 -20.84133 -20.56759 -18.97317 -18.01778 -17.49085 -16.91565 -16.59959 -16.32315 -16.15276 -15.77983 -15.66175 -14.73665 -14.59345 -14.52023 -14.32259 -13.86515 -13.61850 -13.44375 -13.21840 -13.13729 -13.06492 -12.94565 -12.80044 -12.39933 -12.29117 -12.14268 -12.05142 -11.97084 -11.80344 -11.45217 -10.94243 -10.89870 -10.29882 -9.68863 -9.44853 -8.28091 -6.00464 1.45672 1.51182 1.54228 1.60614 2.00163 2.14854 2.34148 2.89405 3.10707 3.41152 3.61753 3.97193 4.01027 4.06056 4.26273 4.30791 4.39999 4.49778 4.49964 4.66744 4.72643 4.75393 4.81651 4.82289 4.85534 4.94384 4.97150 5.02408 5.08830 5.14820 5.33463 5.40099 5.49159 5.54413 5.57971 6.05084 6.07462 6.45316 7.11453 7.16120 7.61555 8.05671 8.74971 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.014202 B = 0.007569 C = 0.005930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.080672 B = 3698.478684 C = 4720.743455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 C -0.115 4.115 4 C 0.119 3.881 5 N -0.445 5.445 6 C -0.357 4.357 7 H 0.109 0.891 8 C 0.009 3.991 9 N -0.888 5.888 10 Si 0.973 3.027 11 H -0.257 1.257 12 H -0.288 1.288 13 H -0.273 1.273 14 C 0.460 3.540 15 O -0.632 6.632 16 C -0.099 4.099 17 H 0.134 0.866 18 C -0.133 4.133 19 C 0.509 3.491 20 O -0.586 6.586 21 N -0.616 5.616 22 C 0.091 3.909 23 C 0.122 3.878 24 H 0.072 0.928 25 H 0.047 0.953 26 H 0.055 0.945 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.032 0.968 30 H 0.053 0.947 31 H 0.090 0.910 32 H 0.030 0.970 33 H 0.271 0.729 34 H 0.089 0.911 35 H 0.141 0.859 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.093 0.907 39 H 0.116 0.884 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.797 4.809 2.805 5.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.153 4.153 3 C -0.154 4.154 4 C -0.005 4.005 5 N -0.161 5.161 6 C -0.484 4.484 7 H 0.127 0.873 8 C -0.195 4.195 9 N -0.525 5.525 10 Si 0.797 3.203 11 H -0.181 1.181 12 H -0.214 1.214 13 H -0.198 1.198 14 C 0.250 3.750 15 O -0.521 6.521 16 C -0.121 4.121 17 H 0.152 0.848 18 C -0.173 4.173 19 C 0.298 3.702 20 O -0.468 6.468 21 N -0.348 5.348 22 C -0.050 4.050 23 C 0.000 4.000 24 H 0.091 0.909 25 H 0.067 0.933 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.051 0.949 30 H 0.072 0.928 31 H 0.108 0.892 32 H 0.048 0.952 33 H 0.081 0.919 34 H 0.107 0.893 35 H 0.159 0.841 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.111 0.889 39 H 0.134 0.866 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.365 4.619 3.304 5.840 hybrid contribution 0.069 -0.275 -0.770 0.820 sum -1.296 4.344 2.534 5.193 Atomic orbital electron populations 1.21718 0.94340 1.02390 1.01619 1.21405 0.96979 0.95125 1.01830 1.21777 0.95863 0.97780 0.99996 1.21311 0.92700 0.84961 1.01507 1.43657 1.54845 1.11996 1.05617 1.19848 1.40368 0.97119 0.91095 0.87331 1.26108 0.93350 0.96361 1.03708 1.70067 1.30525 1.17183 1.34675 0.85284 0.78526 0.78741 0.77706 1.18114 1.21355 1.19800 1.20814 0.80833 0.90094 0.83266 1.90497 1.57669 1.71535 1.32374 1.22031 1.01170 0.91084 0.97795 0.84801 1.22276 0.97595 1.01482 0.95927 1.21296 0.84761 0.76652 0.87461 1.90630 1.20550 1.48034 1.87567 1.48249 1.17975 1.61350 1.07219 1.21689 1.01400 1.01612 0.80318 1.22175 0.84644 0.98489 0.94715 0.90880 0.93349 0.92615 0.91721 0.92436 0.94919 0.92794 0.89166 0.95166 0.91908 0.89250 0.84082 0.91295 0.91875 0.88876 0.86632 0.90326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.98 9.91 71.98 0.71 -3.26 16 2 C -0.12 -3.89 5.93 30.59 0.18 -3.71 16 3 C -0.12 -4.81 5.50 30.60 0.17 -4.65 16 4 C 0.12 5.69 4.92 86.38 0.43 6.12 16 5 N -0.44 -21.41 2.54 -635.55 -1.62 -23.03 16 6 C -0.36 -16.60 8.16 84.04 0.69 -15.91 16 7 H 0.11 4.60 5.84 -2.91 -0.02 4.58 16 8 C 0.01 0.40 4.89 84.93 0.42 0.82 16 9 N -0.89 -44.86 11.47 21.66 0.25 -44.61 16 10 Si 0.97 37.05 29.61 68.60 2.03 39.08 16 11 H -0.26 -9.16 7.11 99.48 0.71 -8.46 16 12 H -0.29 -11.08 7.11 99.48 0.71 -10.37 16 13 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 14 C 0.46 21.17 6.86 87.66 0.60 21.77 16 15 O -0.63 -32.48 15.25 -3.08 -0.05 -32.53 16 16 C -0.10 -3.46 2.59 -10.42 -0.03 -3.49 16 17 H 0.13 4.25 7.85 -2.38 -0.02 4.23 16 18 C -0.13 -4.42 5.37 30.58 0.16 -4.26 16 19 C 0.51 18.90 8.02 87.90 0.71 19.61 16 20 O -0.59 -25.58 17.35 -3.06 -0.05 -25.64 16 21 N -0.62 -19.58 3.33 -842.52 -2.81 -22.39 16 22 C 0.09 2.32 11.14 127.77 1.42 3.74 16 23 C 0.12 3.57 6.66 86.90 0.58 4.15 16 24 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 27 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.09 4.54 5.49 -2.39 -0.01 4.53 16 32 H 0.03 1.53 7.54 -2.39 -0.02 1.51 16 33 H 0.27 13.02 8.31 -92.71 -0.77 12.25 16 34 H 0.09 3.40 6.92 -2.38 -0.02 3.38 16 35 H 0.14 3.64 8.14 -2.39 -0.02 3.62 16 36 H 0.07 1.88 7.53 -2.39 -0.02 1.86 16 37 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 40 H 0.08 2.56 7.11 -2.39 -0.02 2.54 16 Total: -1.00 -65.21 326.99 4.81 -60.40 By element: Atomic # 1 Polarization: 26.77 SS G_CDS: 1.02 Total: 27.79 kcal Atomic # 6 Polarization: 14.90 SS G_CDS: 6.04 Total: 20.93 kcal Atomic # 7 Polarization: -85.85 SS G_CDS: -4.18 Total: -90.03 kcal Atomic # 8 Polarization: -58.07 SS G_CDS: -0.10 Total: -58.17 kcal Atomic # 14 Polarization: 37.05 SS G_CDS: 2.03 Total: 39.08 kcal Total: -65.21 4.81 -60.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178521673.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.803 kcal (2) G-P(sol) polarization free energy of solvation -65.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds