Wall clock time and date at job start Mon Mar 30 2020 01:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.47214 * 2 1 4 4 H 1.09007 * 109.47077 * 305.13925 * 3 2 1 5 5 C 1.50704 * 109.47129 * 185.14289 * 3 2 1 6 6 H 1.08000 * 119.99563 * 245.18014 * 5 3 2 7 7 C 1.37878 * 119.99860 * 64.90411 * 5 3 2 8 8 N 1.31517 * 120.00030 * 7.10140 * 7 5 3 9 9 Si 1.86794 * 119.99800 * 187.10451 * 7 5 3 10 10 H 1.48507 * 109.47141 * 93.93112 * 9 7 5 11 11 H 1.48502 * 109.47164 * 213.92948 * 9 7 5 12 12 H 1.48493 * 109.47477 * 333.92849 * 9 7 5 13 13 N 1.46493 * 109.47502 * 65.14087 * 3 2 1 14 14 C 1.34775 * 120.00393 * 275.00198 * 13 3 2 15 15 O 1.21281 * 119.99986 * 359.97438 * 14 13 3 16 16 C 1.50703 * 120.00382 * 179.97438 * 14 13 3 17 17 H 1.08992 * 109.47147 * 60.00005 * 16 14 13 18 18 C 1.53002 * 109.46749 * 299.99768 * 16 14 13 19 19 N 1.46504 * 109.47178 * 179.97438 * 16 14 13 20 20 C 1.46762 * 124.35013 * 239.72452 * 19 16 14 21 21 C 1.54656 * 105.38137 * 162.85430 * 20 19 16 22 22 C 1.54630 * 101.68664 * 25.76799 * 21 20 19 23 23 C 1.34419 * 124.35026 * 60.02406 * 19 16 14 24 24 O 1.21288 * 124.93706 * 0.38936 * 23 19 16 25 25 H 1.09000 * 109.46787 * 300.00564 * 1 2 3 26 26 H 1.09001 * 109.47030 * 59.99914 * 1 2 3 27 27 H 1.08994 * 109.47319 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46896 * 239.99976 * 2 1 3 29 29 H 1.09000 * 109.46560 * 119.99842 * 2 1 3 30 30 H 0.96998 * 120.00076 * 180.02562 * 8 7 5 31 31 H 0.97002 * 119.99992 * 94.99859 * 13 3 2 32 32 H 1.08994 * 109.47485 * 299.99491 * 18 16 14 33 33 H 1.08998 * 109.46903 * 60.00769 * 18 16 14 34 34 H 1.09006 * 109.46866 * 179.97438 * 18 16 14 35 35 H 1.09001 * 110.24608 * 281.98801 * 20 19 16 36 36 H 1.08997 * 110.24165 * 43.98324 * 20 19 16 37 37 H 1.08997 * 111.19096 * 267.59391 * 21 20 19 38 38 H 1.09003 * 110.85515 * 143.79274 * 21 20 19 39 39 H 1.08993 * 110.48846 * 216.31012 * 22 21 20 40 40 H 1.08999 * 110.59906 * 93.71545 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6035 1.9822 -0.8404 5 6 3.5417 1.4443 -0.1274 6 1 4.1520 1.8121 0.6843 7 6 4.1366 0.9713 -1.2778 8 7 3.3965 0.6494 -2.3162 9 14 5.9936 0.7875 -1.3613 10 1 6.3708 -0.6005 -0.9917 11 1 6.4579 1.0757 -2.7421 12 1 6.6284 1.7411 -0.4165 13 7 1.6555 2.0965 1.2532 14 6 0.4385 2.6633 1.3717 15 8 -0.3381 2.6324 0.4407 16 6 0.0426 3.3356 2.6610 17 1 0.7345 4.1507 2.8731 18 6 0.0888 2.3174 3.8021 19 7 -1.3161 3.8690 2.5365 20 6 -1.6662 5.2865 2.6858 21 6 -3.0691 5.4316 2.0511 22 6 -3.6332 4.0004 2.2076 23 6 -2.4032 3.1224 2.2766 24 8 -2.3985 1.9197 2.1199 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8150 0.3163 -3.1254 31 1 2.2767 2.1215 1.9977 32 1 -0.6031 1.5024 3.5901 33 1 1.0999 1.9210 3.8946 34 1 -0.1971 2.8038 4.7348 35 1 -1.6965 5.5584 3.7409 36 1 -0.9471 5.9104 2.1552 37 1 -2.9989 5.7104 0.9997 38 1 -3.6726 6.1514 2.6041 39 1 -4.2437 3.7345 1.3447 40 1 -4.2144 3.9155 3.1258 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181312920.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:38 Heat of formation + Delta-G solvation = -75.584047 kcal Electronic energy + Delta-G solvation = -21754.457769 eV Core-core repulsion = 18569.050608 eV Total energy + Delta-G solvation = -3185.407161 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.47536 -38.57407 -36.10081 -34.98569 -33.77821 -32.25171 -30.88455 -29.37735 -27.46597 -26.83840 -24.35117 -22.88179 -21.92320 -20.81770 -19.35738 -18.78444 -17.18794 -16.64541 -16.32394 -15.78407 -15.12580 -14.74212 -14.38752 -14.04081 -13.74829 -13.46805 -13.32321 -12.97692 -12.82124 -12.60812 -12.39443 -11.95987 -11.70107 -11.61273 -11.44975 -11.29446 -11.16768 -11.02570 -10.96819 -10.72526 -10.27279 -10.09307 -9.56587 -9.39053 -9.12749 -9.00780 -8.45820 -8.33555 -7.74156 -6.10314 -4.16828 2.85212 3.11347 3.26147 3.33231 3.34805 3.47543 4.15592 4.39070 4.44026 4.48582 4.75992 5.03462 5.12986 5.21220 5.23453 5.35963 5.44499 5.49132 5.63047 5.69966 5.76213 5.88198 5.93497 6.26886 6.50608 6.59117 6.66302 6.78460 7.17584 7.30045 7.35098 7.45743 7.55178 7.67826 7.79334 7.92037 8.14775 8.49065 8.74546 8.84446 9.22304 9.49739 10.97568 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.032138 B = 0.004992 C = 0.004817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.036874 B = 5607.286272 C = 5811.700901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.119 4.119 3 C 0.272 3.728 4 H 0.053 0.947 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.068 3.932 8 N -0.880 5.880 9 Si 0.898 3.102 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.708 5.708 14 C 0.492 3.508 15 O -0.528 6.528 16 C 0.135 3.865 17 H 0.105 0.895 18 C -0.160 4.160 19 N -0.607 5.607 20 C 0.106 3.894 21 C -0.130 4.130 22 C -0.154 4.154 23 C 0.524 3.476 24 O -0.512 6.512 25 H 0.051 0.949 26 H 0.046 0.954 27 H 0.019 0.981 28 H 0.079 0.921 29 H 0.032 0.968 30 H 0.264 0.736 31 H 0.386 0.614 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.099 0.901 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.931 9.725 12.598 18.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.158 4.158 3 C 0.170 3.830 4 H 0.071 0.929 5 C -0.574 4.574 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.517 5.517 9 Si 0.725 3.275 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.357 5.357 14 C 0.275 3.725 15 O -0.404 6.404 16 C 0.028 3.972 17 H 0.123 0.877 18 C -0.218 4.218 19 N -0.343 5.343 20 C -0.018 4.018 21 C -0.168 4.168 22 C -0.194 4.194 23 C 0.312 3.688 24 O -0.386 6.386 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.038 0.962 28 H 0.098 0.902 29 H 0.050 0.950 30 H 0.074 0.926 31 H 0.218 0.782 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.101 0.899 38 H 0.105 0.895 39 H 0.117 0.883 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -9.403 8.941 11.609 17.411 hybrid contribution 1.431 -0.047 0.202 1.446 sum -7.972 8.894 11.811 16.798 Atomic orbital electron populations 1.21834 0.97589 0.98083 1.01992 1.21841 0.93209 0.99748 1.01005 1.18755 0.94143 0.89013 0.81102 0.92942 1.21211 0.90671 1.43512 1.01962 0.92151 1.24893 0.98399 0.95148 0.95130 1.69983 1.35347 1.43155 1.03242 0.86502 0.85124 0.78459 0.77388 1.20568 1.21172 1.19870 1.46416 1.14397 1.56384 1.18481 1.20459 0.83009 0.80037 0.89026 1.90683 1.50761 1.58805 1.40166 1.20894 0.83445 0.97694 0.95136 0.87689 1.22093 1.03665 0.99606 0.96466 1.47932 1.06254 1.08244 1.71827 1.22073 0.97101 0.82108 1.00483 1.22590 0.95227 0.96480 1.02481 1.22297 0.97246 0.95183 1.04714 1.20660 0.85304 0.87713 0.75168 1.90723 1.85728 1.13711 1.48416 0.92972 0.93474 0.96160 0.90227 0.94962 0.92627 0.78215 0.90551 0.90798 0.91983 0.91286 0.90566 0.89882 0.89525 0.88285 0.88368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.39 8.52 37.16 0.32 -3.07 16 2 C -0.12 -3.02 5.49 -26.73 -0.15 -3.17 16 3 C 0.27 7.00 2.11 -69.09 -0.15 6.85 16 4 H 0.05 1.59 7.55 -51.93 -0.39 1.19 16 5 C -0.54 -14.28 8.67 -34.44 -0.30 -14.58 16 6 H 0.06 1.53 7.73 -52.49 -0.41 1.12 16 7 C 0.07 1.85 5.20 -17.82 -0.09 1.76 16 8 N -0.88 -25.37 12.01 55.43 0.67 -24.71 16 9 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 12 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 13 N -0.71 -14.88 4.92 -54.93 -0.27 -15.15 16 14 C 0.49 10.02 5.43 -10.98 -0.06 9.96 16 15 O -0.53 -12.89 12.03 -9.09 -0.11 -13.00 16 16 C 0.14 2.02 3.28 -69.08 -0.23 1.79 16 17 H 0.11 1.25 8.07 -51.93 -0.42 0.83 16 18 C -0.16 -2.14 9.09 37.16 0.34 -1.80 16 19 N -0.61 -8.62 2.63 -166.05 -0.44 -9.05 16 20 C 0.11 1.00 7.31 -3.03 -0.02 0.98 16 21 C -0.13 -1.09 7.19 -25.00 -0.18 -1.27 16 22 C -0.15 -1.69 6.86 -26.74 -0.18 -1.87 16 23 C 0.52 8.53 6.70 -10.86 -0.07 8.45 16 24 O -0.51 -10.71 15.40 -9.09 -0.14 -10.85 16 25 H 0.05 1.30 5.64 -51.93 -0.29 1.01 16 26 H 0.05 1.24 7.86 -51.93 -0.41 0.83 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.08 2.21 6.65 -51.93 -0.35 1.86 16 29 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 31 H 0.39 6.94 7.94 -40.82 -0.32 6.62 16 32 H 0.08 1.26 6.78 -51.93 -0.35 0.91 16 33 H 0.07 0.89 7.56 -51.93 -0.39 0.50 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 40 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 321.06 15.07 4.84 4.84 Total: -1.00 -34.47 321.06 -7.52 -41.99 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -6.27 Total: 6.12 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: -0.77 Total: 4.05 kcal Atomic # 7 Polarization: -48.87 SS G_CDS: -0.04 Total: -48.91 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: -0.25 Total: -23.86 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -34.47 -7.52 -41.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181312920.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.594 kcal (2) G-P(sol) polarization free energy of solvation -34.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds