Wall clock time and date at job start Mon Mar 30 2020 01:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.47214 * 2 1 4 4 H 1.09007 * 109.47077 * 305.13925 * 3 2 1 5 5 C 1.50704 * 109.47129 * 185.14289 * 3 2 1 6 6 H 1.08000 * 119.99563 * 245.18014 * 5 3 2 7 7 C 1.37878 * 119.99860 * 64.90411 * 5 3 2 8 8 N 1.31517 * 120.00030 * 7.10140 * 7 5 3 9 9 Si 1.86794 * 119.99800 * 187.10451 * 7 5 3 10 10 H 1.48507 * 109.47141 * 93.93112 * 9 7 5 11 11 H 1.48502 * 109.47164 * 213.92948 * 9 7 5 12 12 H 1.48493 * 109.47477 * 333.92849 * 9 7 5 13 13 N 1.46493 * 109.47502 * 65.14087 * 3 2 1 14 14 C 1.34775 * 120.00393 * 275.00198 * 13 3 2 15 15 O 1.21281 * 119.99986 * 359.97438 * 14 13 3 16 16 C 1.50703 * 120.00382 * 179.97438 * 14 13 3 17 17 H 1.08992 * 109.47147 * 60.00005 * 16 14 13 18 18 C 1.53002 * 109.46749 * 299.99768 * 16 14 13 19 19 N 1.46504 * 109.47178 * 179.97438 * 16 14 13 20 20 C 1.46762 * 124.35013 * 239.72452 * 19 16 14 21 21 C 1.54656 * 105.38137 * 162.85430 * 20 19 16 22 22 C 1.54630 * 101.68664 * 25.76799 * 21 20 19 23 23 C 1.34419 * 124.35026 * 60.02406 * 19 16 14 24 24 O 1.21288 * 124.93706 * 0.38936 * 23 19 16 25 25 H 1.09000 * 109.46787 * 300.00564 * 1 2 3 26 26 H 1.09001 * 109.47030 * 59.99914 * 1 2 3 27 27 H 1.08994 * 109.47319 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46896 * 239.99976 * 2 1 3 29 29 H 1.09000 * 109.46560 * 119.99842 * 2 1 3 30 30 H 0.96998 * 120.00076 * 180.02562 * 8 7 5 31 31 H 0.97002 * 119.99992 * 94.99859 * 13 3 2 32 32 H 1.08994 * 109.47485 * 299.99491 * 18 16 14 33 33 H 1.08998 * 109.46903 * 60.00769 * 18 16 14 34 34 H 1.09006 * 109.46866 * 179.97438 * 18 16 14 35 35 H 1.09001 * 110.24608 * 281.98801 * 20 19 16 36 36 H 1.08997 * 110.24165 * 43.98324 * 20 19 16 37 37 H 1.08997 * 111.19096 * 267.59391 * 21 20 19 38 38 H 1.09003 * 110.85515 * 143.79274 * 21 20 19 39 39 H 1.08993 * 110.48846 * 216.31012 * 22 21 20 40 40 H 1.08999 * 110.59906 * 93.71545 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6035 1.9822 -0.8404 5 6 3.5417 1.4443 -0.1274 6 1 4.1520 1.8121 0.6843 7 6 4.1366 0.9713 -1.2778 8 7 3.3965 0.6494 -2.3162 9 14 5.9936 0.7875 -1.3613 10 1 6.3708 -0.6005 -0.9917 11 1 6.4579 1.0757 -2.7421 12 1 6.6284 1.7411 -0.4165 13 7 1.6555 2.0965 1.2532 14 6 0.4385 2.6633 1.3717 15 8 -0.3381 2.6324 0.4407 16 6 0.0426 3.3356 2.6610 17 1 0.7345 4.1507 2.8731 18 6 0.0888 2.3174 3.8021 19 7 -1.3161 3.8690 2.5365 20 6 -1.6662 5.2865 2.6858 21 6 -3.0691 5.4316 2.0511 22 6 -3.6332 4.0004 2.2076 23 6 -2.4032 3.1224 2.2766 24 8 -2.3985 1.9197 2.1199 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8150 0.3163 -3.1254 31 1 2.2767 2.1215 1.9977 32 1 -0.6031 1.5024 3.5901 33 1 1.0999 1.9210 3.8946 34 1 -0.1971 2.8038 4.7348 35 1 -1.6965 5.5584 3.7409 36 1 -0.9471 5.9104 2.1552 37 1 -2.9989 5.7104 0.9997 38 1 -3.6726 6.1514 2.6041 39 1 -4.2437 3.7345 1.3447 40 1 -4.2144 3.9155 3.1258 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181312920.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:37 Heat of formation + Delta-G solvation = -99.808663 kcal Electronic energy + Delta-G solvation = -21755.508227 eV Core-core repulsion = 18569.050608 eV Total energy + Delta-G solvation = -3186.457619 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.68766 -40.14105 -37.32469 -36.86078 -35.02293 -34.18033 -32.76186 -30.51246 -28.83756 -28.34770 -25.73078 -24.79994 -22.72786 -22.47298 -21.22715 -20.20541 -18.79549 -17.81185 -17.56180 -17.35113 -16.90739 -16.29765 -16.05745 -15.53829 -14.91180 -14.72596 -14.64726 -14.49546 -14.15901 -13.88665 -13.66368 -13.49177 -13.30347 -13.14705 -12.91776 -12.81330 -12.71283 -12.62564 -12.24256 -12.16607 -12.08410 -11.80696 -11.63740 -11.08689 -10.72295 -10.57478 -10.52237 -9.61206 -9.58222 -8.18703 -6.33663 1.44109 1.45347 1.55855 1.66871 1.89453 2.07905 2.38479 2.73402 3.12835 3.52142 3.69224 3.95092 4.04385 4.09146 4.15072 4.29126 4.41173 4.49875 4.63719 4.69847 4.73292 4.76004 4.79120 4.91716 5.03702 5.10389 5.18047 5.20911 5.27376 5.40147 5.51302 5.61551 5.63819 5.72243 5.93620 6.07561 6.28299 6.76252 7.00699 7.32669 7.35276 7.64248 8.89992 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.032138 B = 0.004992 C = 0.004817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.036874 B = 5607.286272 C = 5811.700901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.110 4.110 3 C 0.282 3.718 4 H -0.003 1.003 5 C -0.546 4.546 6 H 0.076 0.924 7 C 0.014 3.986 8 N -0.921 5.921 9 Si 0.971 3.029 10 H -0.274 1.274 11 H -0.288 1.288 12 H -0.258 1.258 13 N -0.704 5.704 14 C 0.483 3.517 15 O -0.575 6.575 16 C 0.140 3.860 17 H 0.146 0.854 18 C -0.151 4.151 19 N -0.611 5.611 20 C 0.098 3.902 21 C -0.120 4.120 22 C -0.149 4.149 23 C 0.502 3.498 24 O -0.574 6.574 25 H 0.047 0.953 26 H 0.017 0.983 27 H 0.037 0.963 28 H 0.052 0.948 29 H 0.046 0.954 30 H 0.264 0.736 31 H 0.403 0.597 32 H 0.039 0.961 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.107 0.893 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.129 0.871 39 H 0.090 0.910 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.110 11.689 15.363 20.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.149 4.149 3 C 0.178 3.822 4 H 0.015 0.985 5 C -0.584 4.584 6 H 0.094 0.906 7 C -0.186 4.186 8 N -0.559 5.559 9 Si 0.796 3.204 10 H -0.200 1.200 11 H -0.214 1.214 12 H -0.182 1.182 13 N -0.354 5.354 14 C 0.269 3.731 15 O -0.454 6.454 16 C 0.033 3.967 17 H 0.163 0.837 18 C -0.209 4.209 19 N -0.344 5.344 20 C -0.024 4.024 21 C -0.157 4.157 22 C -0.189 4.189 23 C 0.292 3.708 24 O -0.453 6.453 25 H 0.066 0.934 26 H 0.036 0.964 27 H 0.056 0.944 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.238 0.762 32 H 0.058 0.942 33 H 0.105 0.895 34 H 0.114 0.886 35 H 0.125 0.875 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.147 0.853 39 H 0.109 0.891 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -8.573 10.971 14.434 20.055 hybrid contribution 1.116 -0.616 -0.675 1.443 sum -7.456 10.355 13.759 18.765 Atomic orbital electron populations 1.21630 0.97143 0.98576 1.00299 1.21699 0.93361 0.99652 1.00190 1.18279 0.93803 0.88594 0.81555 0.98538 1.21568 0.91110 1.43245 1.02451 0.90577 1.25837 1.03441 0.94662 0.94659 1.70149 1.37588 1.44192 1.03935 0.85350 0.78928 0.78777 0.77368 1.19982 1.21439 1.18209 1.46166 1.15441 1.56381 1.17459 1.21558 0.81832 0.79145 0.90592 1.90664 1.51886 1.60379 1.42498 1.20959 0.84949 0.98911 0.91929 0.83651 1.22044 1.03560 0.98268 0.97056 1.48214 1.05398 1.10205 1.70625 1.22478 0.97637 0.79209 1.03031 1.22652 0.95047 0.95464 1.02556 1.22344 0.95139 0.95631 1.05764 1.21686 0.87487 0.87563 0.74096 1.90676 1.86968 1.16539 1.51135 0.93364 0.96375 0.94414 0.92920 0.93562 0.92711 0.76170 0.94216 0.89501 0.88592 0.87507 0.89971 0.91046 0.85320 0.89135 0.85540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.14 8.52 71.98 0.61 -5.52 16 2 C -0.11 -5.77 5.49 30.60 0.17 -5.60 16 3 C 0.28 14.98 2.11 44.25 0.09 15.07 16 4 H 0.00 -0.21 7.55 -2.38 -0.02 -0.23 16 5 C -0.55 -29.21 8.67 25.60 0.22 -28.99 16 6 H 0.08 3.75 7.73 -2.91 -0.02 3.72 16 7 C 0.01 0.77 5.20 84.65 0.44 1.21 16 8 N -0.92 -54.76 12.01 21.45 0.26 -54.50 16 9 Si 0.97 42.48 29.54 68.60 2.03 44.51 16 10 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 11 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 12 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 13 N -0.70 -29.75 4.92 -446.10 -2.19 -31.94 16 14 C 0.48 19.90 5.43 87.66 0.48 20.38 16 15 O -0.57 -29.41 12.03 10.97 0.13 -29.28 16 16 C 0.14 3.91 3.28 44.25 0.15 4.05 16 17 H 0.15 2.90 8.07 -2.39 -0.02 2.88 16 18 C -0.15 -3.73 9.09 71.98 0.65 -3.07 16 19 N -0.61 -16.26 2.63 -797.85 -2.09 -18.36 16 20 C 0.10 1.50 7.31 86.89 0.64 2.13 16 21 C -0.12 -1.62 7.19 31.71 0.23 -1.39 16 22 C -0.15 -3.02 6.86 30.59 0.21 -2.81 16 23 C 0.50 16.28 6.70 87.90 0.59 16.87 16 24 O -0.57 -25.09 15.40 10.95 0.17 -24.92 16 25 H 0.05 2.51 5.64 -2.39 -0.01 2.50 16 26 H 0.02 0.98 7.86 -2.39 -0.02 0.96 16 27 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.05 3.04 6.65 -2.39 -0.02 3.03 16 29 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 31 H 0.40 14.00 7.94 -92.71 -0.74 13.26 16 32 H 0.04 1.29 6.78 -2.39 -0.02 1.28 16 33 H 0.09 1.88 7.56 -2.39 -0.02 1.86 16 34 H 0.10 1.72 8.14 -2.38 -0.02 1.70 16 35 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.07 1.14 8.14 -2.39 -0.02 1.13 16 38 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.13 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -81.35 321.06 3.07 -78.28 By element: Atomic # 1 Polarization: 23.60 SS G_CDS: 0.30 Total: 23.90 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: 4.47 Total: 12.31 kcal Atomic # 7 Polarization: -100.77 SS G_CDS: -4.03 Total: -104.80 kcal Atomic # 8 Polarization: -54.50 SS G_CDS: 0.30 Total: -54.20 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Total: -81.35 3.07 -78.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181312920.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.526 kcal (2) G-P(sol) polarization free energy of solvation -81.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds