Wall clock time and date at job start Mon Mar 30 2020 01:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50705 * 120.00242 * 2 1 4 4 C 1.53004 * 109.46970 * 124.99826 * 3 2 1 5 5 O 1.42900 * 109.46961 * 180.02562 * 4 3 2 6 6 C 1.42893 * 113.99939 * 180.02562 * 5 4 3 7 7 C 1.50699 * 109.47373 * 180.02562 * 6 5 4 8 8 O 1.21284 * 119.99646 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00133 * 180.02562 * 7 6 5 10 10 C 1.47024 * 125.65279 * 0.03813 * 9 7 6 11 11 C 1.54321 * 107.27529 * 181.02393 * 10 9 7 12 12 C 1.55158 * 102.93990 * 22.19804 * 11 10 9 13 13 H 1.08997 * 111.04126 * 82.58162 * 12 11 10 14 14 N 1.46506 * 111.00163 * 206.42532 * 12 11 10 15 15 C 1.36929 * 119.99807 * 198.64767 * 14 12 11 16 16 H 1.08004 * 120.00341 * 0.27647 * 15 14 12 17 17 C 1.38815 * 120.00031 * 179.97438 * 15 14 12 18 18 N 1.31617 * 119.99916 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99958 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47228 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46793 * 120.00365 * 19 17 15 22 22 H 1.48500 * 109.47000 * 240.00457 * 19 17 15 23 23 C 1.47430 * 125.64860 * 180.02562 * 9 7 6 24 24 H 1.07997 * 120.00026 * 179.97438 * 1 2 3 25 25 H 1.08002 * 120.00066 * 0.02562 * 1 2 3 26 26 H 1.08002 * 120.00098 * 180.02562 * 2 1 3 27 27 H 1.09001 * 109.46399 * 5.00219 * 3 2 1 28 28 H 1.08990 * 109.47301 * 245.00415 * 3 2 1 29 29 H 1.09000 * 109.46933 * 60.00455 * 4 3 2 30 30 H 1.08997 * 109.46957 * 300.00219 * 4 3 2 31 31 H 1.08997 * 109.47236 * 59.99773 * 6 5 4 32 32 H 1.09003 * 109.47217 * 300.00278 * 6 5 4 33 33 H 1.08996 * 109.88197 * 300.45197 * 10 9 7 34 34 H 1.09004 * 109.87817 * 61.45056 * 10 9 7 35 35 H 1.08997 * 110.72085 * 263.83601 * 11 10 9 36 36 H 1.09000 * 110.71957 * 140.55832 * 11 10 9 37 37 H 0.96999 * 120.00076 * 18.64831 * 14 12 11 38 38 H 0.97000 * 120.00284 * 179.97438 * 18 17 15 39 39 H 1.08995 * 110.36505 * 37.06057 * 23 9 7 40 40 H 1.09007 * 110.45089 * 274.79032 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3330 1.1817 5 8 3.7492 2.5708 1.1820 6 6 4.6886 2.6995 2.2511 7 6 5.3798 4.0352 2.1544 8 8 5.0955 4.8016 1.2585 9 7 6.3138 4.3779 3.0636 10 6 6.7536 3.5484 4.1949 11 6 7.8124 4.3580 4.9726 12 6 7.4993 5.8218 4.5643 13 1 6.6869 6.2304 5.1651 14 7 8.6956 6.6618 4.6630 15 6 8.5724 8.0242 4.7233 16 1 7.5932 8.4794 4.7025 17 6 9.7059 8.8201 4.8174 18 7 10.8989 8.2652 4.8482 19 14 9.5378 10.6787 4.9003 20 1 8.1005 11.0485 4.8492 21 1 10.1309 11.1732 6.1687 22 1 10.2483 11.2918 3.7494 23 6 7.0640 5.6468 3.0882 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3586 2.1316 0.0896 28 1 2.6213 1.4026 -0.9313 29 1 3.7400 0.5065 1.0921 30 1 2.4772 1.2355 2.1130 31 1 5.4280 1.9016 2.1831 32 1 4.1655 2.6297 3.2048 33 1 5.9061 3.3269 4.8436 34 1 7.1904 2.6202 3.8262 35 1 8.8183 4.0774 4.6604 36 1 7.6890 4.2226 6.0470 37 1 9.5749 6.2528 4.6857 38 1 11.6910 8.8213 4.9136 39 1 6.4224 6.4728 2.7813 40 1 7.9381 5.5852 2.4397 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188287518.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:28 Heat of formation + Delta-G solvation = -69.868387 kcal Electronic energy + Delta-G solvation = -19809.416222 eV Core-core repulsion = 16624.256911 eV Total energy + Delta-G solvation = -3185.159311 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.11249 -39.23723 -38.31944 -35.96227 -35.87198 -33.43281 -31.32275 -30.79600 -29.59398 -27.85906 -25.71071 -23.96171 -23.85866 -21.71930 -20.80671 -20.30812 -19.28986 -18.33163 -17.76836 -17.40466 -17.11159 -16.45250 -16.37555 -15.78229 -15.58465 -15.21642 -14.81097 -14.52911 -14.36710 -14.19520 -13.82708 -13.66167 -13.30830 -13.13874 -12.91778 -12.55453 -12.52618 -12.33087 -12.14138 -12.05954 -11.96967 -11.78766 -11.60014 -11.06606 -10.88567 -10.68155 -10.25874 -9.70265 -9.09330 -7.99524 -5.29215 1.33604 1.45806 1.47431 1.53218 1.56738 1.70464 2.53110 2.88946 3.31830 3.52886 3.65858 3.95623 4.01135 4.07802 4.14589 4.18721 4.23814 4.28133 4.33425 4.38599 4.46863 4.50380 4.55078 4.73417 4.86210 4.91194 5.02508 5.03430 5.10296 5.18629 5.22588 5.36985 5.51118 5.73599 5.86700 6.10726 6.22982 6.53464 7.10520 7.30216 8.01811 8.25791 9.23276 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.045098 B = 0.002837 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.726649 B = 9867.311266 C =10270.268192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.158 4.158 3 C -0.096 4.096 4 C 0.063 3.937 5 O -0.403 6.403 6 C 0.060 3.940 7 C 0.514 3.486 8 O -0.588 6.588 9 N -0.613 5.613 10 C 0.103 3.897 11 C -0.128 4.128 12 C 0.164 3.836 13 H 0.063 0.937 14 N -0.724 5.724 15 C -0.247 4.247 16 H 0.073 0.927 17 C -0.070 4.070 18 N -0.964 5.964 19 Si 0.970 3.030 20 H -0.269 1.269 21 H -0.289 1.289 22 H -0.295 1.295 23 C 0.092 3.908 24 H 0.114 0.886 25 H 0.094 0.906 26 H 0.126 0.874 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.074 0.926 36 H 0.104 0.896 37 H 0.379 0.621 38 H 0.253 0.747 39 H 0.040 0.960 40 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.172 -21.441 -2.041 26.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.176 4.176 3 C -0.133 4.133 4 C -0.013 4.013 5 O -0.323 6.323 6 C -0.019 4.019 7 C 0.303 3.697 8 O -0.468 6.468 9 N -0.348 5.348 10 C -0.018 4.018 11 C -0.167 4.167 12 C 0.054 3.946 13 H 0.081 0.919 14 N -0.363 5.363 15 C -0.378 4.378 16 H 0.091 0.909 17 C -0.262 4.262 18 N -0.614 5.614 19 Si 0.799 3.201 20 H -0.194 1.194 21 H -0.216 1.216 22 H -0.222 1.222 23 C -0.034 4.034 24 H 0.133 0.867 25 H 0.112 0.888 26 H 0.144 0.856 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.121 0.879 34 H 0.118 0.882 35 H 0.093 0.907 36 H 0.122 0.878 37 H 0.212 0.788 38 H 0.062 0.938 39 H 0.058 0.942 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -16.490 -20.754 -2.670 26.641 hybrid contribution 0.705 1.276 -0.158 1.466 sum -15.785 -19.478 -2.828 25.230 Atomic orbital electron populations 1.24084 0.95940 1.02710 0.99826 1.22822 0.96138 0.97629 1.01015 1.20652 0.97831 0.96537 0.98308 1.22680 0.94285 0.85146 0.99203 1.87961 1.55145 1.39570 1.49595 1.22235 0.93560 0.93325 0.92764 1.20871 0.78942 0.89442 0.80418 1.90697 1.65288 1.54793 1.35995 1.48548 1.38337 1.19221 1.28659 1.22355 0.98566 0.94140 0.86784 1.22844 0.99298 0.92720 1.01801 1.21490 0.89842 0.91813 0.91498 0.91927 1.42439 1.03850 1.02700 1.87288 1.19618 0.92824 0.84076 1.41309 0.90916 1.25527 0.95120 1.02275 1.03328 1.69794 0.97354 1.35427 1.58821 0.85132 0.77597 0.80603 0.76771 1.19396 1.21573 1.22226 1.22975 0.94070 0.85129 1.01218 0.86741 0.88768 0.85580 0.91792 0.90948 0.90960 0.91476 0.87004 0.87013 0.87927 0.88249 0.90709 0.87771 0.78814 0.93845 0.94170 0.93628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.08 14.32 67.78 0.97 -1.11 16 2 C -0.16 -1.88 9.52 25.65 0.24 -1.63 16 3 C -0.10 -1.55 6.03 29.85 0.18 -1.37 16 4 C 0.06 0.98 5.92 71.98 0.43 1.41 16 5 O -0.40 -10.11 9.88 -129.94 -1.28 -11.40 16 6 C 0.06 1.21 5.61 71.24 0.40 1.61 16 7 C 0.51 16.47 7.93 87.66 0.69 17.16 16 8 O -0.59 -25.81 16.76 15.99 0.27 -25.55 16 9 N -0.61 -18.34 3.33 -811.82 -2.70 -21.04 16 10 C 0.10 2.00 6.49 86.73 0.56 2.56 16 11 C -0.13 -3.29 6.58 31.78 0.21 -3.08 16 12 C 0.16 6.14 3.68 46.38 0.17 6.31 16 13 H 0.06 2.37 8.13 -2.39 -0.02 2.35 16 14 N -0.72 -35.22 5.28 -316.40 -1.67 -36.89 16 15 C -0.25 -13.56 9.98 84.04 0.84 -12.72 16 16 H 0.07 3.92 7.83 -2.91 -0.02 3.90 16 17 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 18 N -0.96 -57.98 13.06 21.65 0.28 -57.70 16 19 Si 0.97 46.27 29.55 68.60 2.03 48.30 16 20 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 21 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 22 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 23 C 0.09 3.59 6.60 86.85 0.57 4.16 16 24 H 0.11 0.89 8.06 -2.91 -0.02 0.87 16 25 H 0.09 1.09 7.84 -2.91 -0.02 1.07 16 26 H 0.13 1.08 8.06 -2.91 -0.02 1.06 16 27 H 0.06 1.17 7.79 -2.39 -0.02 1.15 16 28 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.10 1.35 8.14 -2.38 -0.02 1.33 16 35 H 0.07 2.01 8.00 -2.39 -0.02 1.99 16 36 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.38 19.47 7.71 -92.71 -0.71 18.76 16 38 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 39 H 0.04 1.77 8.04 -2.39 -0.02 1.75 16 40 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 Total: -1.00 -75.84 340.35 2.95 -72.89 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: 0.29 Total: 21.57 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: 5.74 Total: 9.81 kcal Atomic # 7 Polarization: -111.54 SS G_CDS: -4.09 Total: -115.63 kcal Atomic # 8 Polarization: -35.93 SS G_CDS: -1.02 Total: -36.94 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Total: -75.84 2.95 -72.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188287518.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.023 kcal (2) G-P(sol) polarization free energy of solvation -75.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds