Wall clock time and date at job start Mon Mar 30 2020 01:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50694 * 120.00079 * 2 1 4 4 H 1.09003 * 109.99009 * 358.92177 * 3 2 1 5 5 O 1.43741 * 109.88381 * 237.83411 * 3 2 1 6 6 C 1.44382 * 106.97688 * 214.06397 * 5 3 2 7 7 C 1.54995 * 103.48845 * 40.05691 * 6 5 3 8 8 C 1.54102 * 109.87742 * 119.99719 * 3 2 1 9 9 H 1.09003 * 110.48823 * 2.64985 * 8 3 2 10 10 N 1.46499 * 110.49050 * 240.13262 * 8 3 2 11 11 C 1.34777 * 119.99665 * 155.28022 * 10 8 3 12 12 O 1.21583 * 120.00270 * 359.72083 * 11 10 8 13 13 N 1.34775 * 119.99585 * 179.72218 * 11 10 8 14 14 C 1.46507 * 119.99876 * 179.97438 * 13 11 10 15 15 C 1.53003 * 109.46968 * 180.02562 * 14 13 11 16 16 C 1.52994 * 109.46837 * 180.02562 * 15 14 13 17 17 C 1.50701 * 109.47362 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99305 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00190 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99542 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00085 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.47180 * 90.00070 * 21 19 17 23 23 H 1.48503 * 109.46903 * 210.00050 * 21 19 17 24 24 H 1.48498 * 109.47152 * 329.99815 * 21 19 17 25 25 H 1.08000 * 119.99716 * 179.97438 * 1 2 3 26 26 H 1.08000 * 120.00119 * 359.97438 * 1 2 3 27 27 H 1.07999 * 119.99600 * 180.02562 * 2 1 3 28 28 H 1.09003 * 110.61322 * 158.56043 * 6 5 3 29 29 H 1.08998 * 110.61440 * 281.55616 * 6 5 3 30 30 H 1.09002 * 110.90450 * 204.77282 * 7 6 5 31 31 H 1.09005 * 110.90675 * 81.18025 * 7 6 5 32 32 H 0.97001 * 119.99790 * 334.99735 * 10 8 3 33 33 H 0.97000 * 120.00523 * 0.02562 * 13 11 10 34 34 H 1.08998 * 109.47039 * 300.00042 * 14 13 11 35 35 H 1.08994 * 109.46660 * 60.00264 * 14 13 11 36 36 H 1.08998 * 109.46943 * 299.99694 * 15 14 13 37 37 H 1.08994 * 109.47116 * 60.00083 * 15 14 13 38 38 H 1.08996 * 109.47756 * 299.99976 * 16 15 14 39 39 H 1.09008 * 109.47349 * 59.99909 * 16 15 14 40 40 H 0.96999 * 119.99467 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 1 1.3629 2.1398 -0.0193 5 8 2.9312 1.3686 -1.1442 6 6 4.1112 2.0951 -0.7387 7 6 4.3852 1.5691 0.6933 8 6 2.9530 1.3965 1.2551 9 1 2.8791 0.4813 1.8426 10 7 2.5772 2.5569 2.0665 11 6 2.8402 2.5686 3.3883 12 8 3.3848 1.6139 3.9082 13 7 2.4996 3.6385 4.1337 14 6 2.7850 3.6510 5.5706 15 6 2.3005 4.9702 6.1754 16 6 2.5991 4.9835 7.6758 17 6 2.1225 6.2832 8.2715 18 1 1.6531 7.0252 7.6427 19 6 2.2847 6.5244 9.6193 20 7 1.8683 7.6584 10.1391 21 14 3.0960 5.2405 10.7069 22 1 4.5618 5.4758 10.7415 23 1 2.5462 5.3386 12.0829 24 1 2.8248 3.8864 10.1609 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 4.9482 1.8664 -1.3984 29 1 3.9153 3.1672 -0.7229 30 1 4.9460 2.3003 1.2755 31 1 4.9090 0.6136 0.6631 32 1 2.1427 3.3186 1.6516 33 1 2.0647 4.4000 3.7190 34 1 2.2682 2.8201 6.0509 35 1 3.8588 3.5511 5.7286 36 1 2.8169 5.8014 5.6952 37 1 1.2266 5.0696 6.0174 38 1 2.0831 4.1524 8.1565 39 1 3.6732 4.8843 7.8335 40 1 1.9827 7.8283 11.0872 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001221837669.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:27 Heat of formation + Delta-G solvation = -64.801214 kcal Electronic energy + Delta-G solvation = -19919.115551 eV Core-core repulsion = 16734.175969 eV Total energy + Delta-G solvation = -3184.939582 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.63598 -39.25086 -35.70434 -34.67671 -34.13282 -33.32361 -31.65758 -30.69143 -28.38416 -26.89562 -23.37397 -23.11019 -21.81321 -20.89414 -20.59667 -20.04606 -18.22953 -17.23937 -16.77929 -16.66661 -15.71320 -15.48785 -15.43635 -14.53870 -14.44874 -14.14511 -14.03083 -13.86343 -13.44650 -12.81298 -12.67200 -12.46417 -12.00331 -11.90977 -11.69064 -11.51513 -11.40342 -11.08677 -10.90353 -10.37050 -10.19191 -10.02620 -9.95381 -9.84251 -9.69776 -9.29961 -9.24134 -8.74954 -8.56598 -6.07542 -4.06336 1.77956 2.61361 3.20662 3.30691 3.38312 3.42723 3.64141 4.21034 4.22042 4.27789 4.43549 4.51542 4.65271 4.81349 4.89642 5.04950 5.26682 5.31913 5.39832 5.50462 5.53044 5.65351 5.66117 5.67408 6.01130 6.18366 6.21278 6.28036 6.34296 6.44564 6.51861 6.64959 6.79348 6.91131 7.21863 7.35234 7.74477 8.00953 8.48782 8.61507 8.96196 9.54760 11.05726 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.037080 B = 0.002877 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.946906 B = 9729.664312 C = 9843.656921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.155 4.155 3 C 0.100 3.900 4 H 0.077 0.923 5 O -0.366 6.366 6 C 0.044 3.956 7 C -0.167 4.167 8 C 0.139 3.861 9 H 0.108 0.892 10 N -0.743 5.743 11 C 0.702 3.298 12 O -0.591 6.591 13 N -0.740 5.740 14 C 0.133 3.867 15 C -0.113 4.113 16 C -0.011 4.011 17 C -0.522 4.522 18 H 0.072 0.928 19 C 0.066 3.934 20 N -0.903 5.903 21 Si 0.880 3.120 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.264 1.264 25 H 0.105 0.895 26 H 0.099 0.901 27 H 0.118 0.882 28 H 0.096 0.904 29 H 0.062 0.938 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.395 0.605 33 H 0.395 0.605 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.019 0.981 39 H 0.015 0.985 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.836 -12.500 -23.089 26.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.173 4.173 3 C 0.042 3.958 4 H 0.095 0.905 5 O -0.285 6.285 6 C -0.032 4.032 7 C -0.206 4.206 8 C 0.033 3.967 9 H 0.126 0.874 10 N -0.400 5.400 11 C 0.402 3.598 12 O -0.469 6.469 13 N -0.395 5.395 14 C 0.009 3.991 15 C -0.151 4.151 16 C -0.049 4.049 17 C -0.560 4.560 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.542 5.542 21 Si 0.707 3.293 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.189 1.189 25 H 0.124 0.876 26 H 0.117 0.883 27 H 0.136 0.864 28 H 0.114 0.886 29 H 0.080 0.920 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.229 0.771 33 H 0.229 0.771 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.037 0.963 39 H 0.033 0.967 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.286 -13.376 -22.599 26.292 hybrid contribution 0.057 0.342 0.526 0.630 sum 1.342 -13.034 -22.073 25.669 Atomic orbital electron populations 1.23918 0.95636 1.02438 0.98524 1.22762 0.95812 0.97418 1.01308 1.22063 0.92118 0.96501 0.85140 0.90505 1.88966 1.30399 1.76429 1.32706 1.23629 0.88216 0.96026 0.95363 1.23592 0.97305 1.03282 0.96381 1.22076 0.92796 0.90383 0.91470 0.87375 1.45164 1.66699 1.20907 1.07227 1.15976 0.79416 0.83550 0.80847 1.90921 1.48577 1.35546 1.71812 1.45344 1.65142 1.18778 1.10185 1.21533 1.00753 0.99802 0.76984 1.21706 1.00749 0.93950 0.98677 1.19500 0.96575 0.98067 0.90744 1.21097 1.39623 1.01240 0.94068 0.91027 1.25030 0.95077 0.95295 0.98087 1.69916 1.47367 1.23926 1.13019 0.86771 0.79883 0.82825 0.79801 1.20235 1.21372 1.18857 0.87637 0.88306 0.86418 0.88587 0.91972 0.89388 0.89486 0.77099 0.77120 0.91923 0.91931 0.92156 0.92118 0.96270 0.96715 0.92688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.22 14.32 29.01 0.42 -0.80 16 2 C -0.15 -1.28 8.94 -36.03 -0.32 -1.60 16 3 C 0.10 0.86 3.57 -27.31 -0.10 0.76 16 4 H 0.08 0.58 7.31 -51.93 -0.38 0.20 16 5 O -0.37 -3.49 11.17 -35.23 -0.39 -3.89 16 6 C 0.04 0.33 7.72 38.21 0.29 0.62 16 7 C -0.17 -1.44 6.88 -24.72 -0.17 -1.61 16 8 C 0.14 1.35 3.02 -66.40 -0.20 1.15 16 9 H 0.11 1.25 7.11 -51.93 -0.37 0.88 16 10 N -0.74 -7.42 5.08 -57.18 -0.29 -7.72 16 11 C 0.70 9.93 8.56 -86.92 -0.74 9.19 16 12 O -0.59 -10.86 15.99 5.29 0.08 -10.77 16 13 N -0.74 -9.89 5.56 -65.22 -0.36 -10.26 16 14 C 0.13 2.18 5.67 -4.04 -0.02 2.15 16 15 C -0.11 -2.07 5.27 -26.73 -0.14 -2.21 16 16 C -0.01 -0.25 4.04 -27.89 -0.11 -0.36 16 17 C -0.52 -14.63 9.66 -34.44 -0.33 -14.97 16 18 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 19 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 20 N -0.90 -27.69 13.96 55.43 0.77 -26.92 16 21 Si 0.88 21.67 27.47 -169.99 -4.67 17.00 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.26 -6.26 6.54 56.52 0.37 -5.90 16 25 H 0.11 0.63 8.06 -52.49 -0.42 0.21 16 26 H 0.10 0.65 7.85 -52.49 -0.41 0.24 16 27 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 28 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.09 0.84 8.06 -51.93 -0.42 0.42 16 31 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.39 2.85 8.36 -40.82 -0.34 2.51 16 33 H 0.40 4.15 8.49 -40.82 -0.35 3.80 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 39 H 0.01 0.34 7.57 -51.92 -0.39 -0.06 16 40 H 0.26 7.55 8.31 -40.82 -0.34 7.22 16 LS Contribution 334.48 15.07 5.04 5.04 Total: -1.00 -33.63 334.48 -7.77 -41.40 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -6.42 Total: 1.98 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: -1.53 Total: -5.87 kcal Atomic # 7 Polarization: -45.01 SS G_CDS: 0.12 Total: -44.89 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -0.31 Total: -14.66 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.67 Total: 17.00 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.63 -7.77 -41.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221837669.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.403 kcal (2) G-P(sol) polarization free energy of solvation -33.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds