Wall clock time and date at job start Mon Mar 30 2020 01:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50694 * 120.00079 * 2 1 4 4 H 1.09003 * 109.99009 * 358.92177 * 3 2 1 5 5 O 1.43741 * 109.88381 * 237.83411 * 3 2 1 6 6 C 1.44382 * 106.97688 * 214.06397 * 5 3 2 7 7 C 1.54995 * 103.48845 * 40.05691 * 6 5 3 8 8 C 1.54102 * 109.87742 * 119.99719 * 3 2 1 9 9 H 1.09003 * 110.48823 * 2.64985 * 8 3 2 10 10 N 1.46499 * 110.49050 * 240.13262 * 8 3 2 11 11 C 1.34777 * 119.99665 * 155.28022 * 10 8 3 12 12 O 1.21583 * 120.00270 * 359.72083 * 11 10 8 13 13 N 1.34775 * 119.99585 * 179.72218 * 11 10 8 14 14 C 1.46507 * 119.99876 * 179.97438 * 13 11 10 15 15 C 1.53003 * 109.46968 * 180.02562 * 14 13 11 16 16 C 1.52994 * 109.46837 * 180.02562 * 15 14 13 17 17 C 1.50701 * 109.47362 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99305 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00190 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99542 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00085 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.47180 * 90.00070 * 21 19 17 23 23 H 1.48503 * 109.46903 * 210.00050 * 21 19 17 24 24 H 1.48498 * 109.47152 * 329.99815 * 21 19 17 25 25 H 1.08000 * 119.99716 * 179.97438 * 1 2 3 26 26 H 1.08000 * 120.00119 * 359.97438 * 1 2 3 27 27 H 1.07999 * 119.99600 * 180.02562 * 2 1 3 28 28 H 1.09003 * 110.61322 * 158.56043 * 6 5 3 29 29 H 1.08998 * 110.61440 * 281.55616 * 6 5 3 30 30 H 1.09002 * 110.90450 * 204.77282 * 7 6 5 31 31 H 1.09005 * 110.90675 * 81.18025 * 7 6 5 32 32 H 0.97001 * 119.99790 * 334.99735 * 10 8 3 33 33 H 0.97000 * 120.00523 * 0.02562 * 13 11 10 34 34 H 1.08998 * 109.47039 * 300.00042 * 14 13 11 35 35 H 1.08994 * 109.46660 * 60.00264 * 14 13 11 36 36 H 1.08998 * 109.46943 * 299.99694 * 15 14 13 37 37 H 1.08994 * 109.47116 * 60.00083 * 15 14 13 38 38 H 1.08996 * 109.47756 * 299.99976 * 16 15 14 39 39 H 1.09008 * 109.47349 * 59.99909 * 16 15 14 40 40 H 0.96999 * 119.99467 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 1 1.3629 2.1398 -0.0193 5 8 2.9312 1.3686 -1.1442 6 6 4.1112 2.0951 -0.7387 7 6 4.3852 1.5691 0.6933 8 6 2.9530 1.3965 1.2551 9 1 2.8791 0.4813 1.8426 10 7 2.5772 2.5569 2.0665 11 6 2.8402 2.5686 3.3883 12 8 3.3848 1.6139 3.9082 13 7 2.4996 3.6385 4.1337 14 6 2.7850 3.6510 5.5706 15 6 2.3005 4.9702 6.1754 16 6 2.5991 4.9835 7.6758 17 6 2.1225 6.2832 8.2715 18 1 1.6531 7.0252 7.6427 19 6 2.2847 6.5244 9.6193 20 7 1.8683 7.6584 10.1391 21 14 3.0960 5.2405 10.7069 22 1 4.5618 5.4758 10.7415 23 1 2.5462 5.3386 12.0829 24 1 2.8248 3.8864 10.1609 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 4.9482 1.8664 -1.3984 29 1 3.9153 3.1672 -0.7229 30 1 4.9460 2.3003 1.2755 31 1 4.9090 0.6136 0.6631 32 1 2.1427 3.3186 1.6516 33 1 2.0647 4.4000 3.7190 34 1 2.2682 2.8201 6.0509 35 1 3.8588 3.5511 5.7286 36 1 2.8169 5.8014 5.6952 37 1 1.2266 5.0696 6.0174 38 1 2.0831 4.1524 8.1565 39 1 3.6732 4.8843 7.8335 40 1 1.9827 7.8283 11.0872 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001221837669.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:26 Heat of formation + Delta-G solvation = -89.520547 kcal Electronic energy + Delta-G solvation = -19920.187461 eV Core-core repulsion = 16734.175969 eV Total energy + Delta-G solvation = -3186.011493 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.52429 -40.18715 -37.07793 -35.63267 -35.14307 -34.77382 -33.31911 -31.64785 -29.32358 -28.36320 -24.78912 -23.91054 -22.81485 -22.21550 -21.64365 -20.98718 -19.31468 -18.90824 -17.94923 -17.44075 -16.81912 -16.60483 -16.24584 -16.16743 -15.62770 -15.23803 -15.13818 -14.85757 -14.73565 -14.11034 -13.80903 -13.71785 -13.45756 -13.08576 -12.72303 -12.68114 -12.35831 -12.13731 -12.09774 -11.91840 -11.77447 -11.58333 -11.34136 -11.30225 -10.82788 -10.75554 -10.65337 -10.29072 -9.79235 -8.28981 -6.32742 1.18779 1.37653 1.39389 1.51167 1.61709 2.09620 2.37037 2.97855 3.07046 3.30207 3.52170 3.58695 3.85638 4.01341 4.10990 4.21185 4.22857 4.25022 4.43507 4.52340 4.70492 4.82467 4.84786 4.91474 4.92610 4.97794 5.01436 5.05201 5.38822 5.42137 5.52544 5.57487 5.61590 5.65725 5.68474 5.86192 5.95320 6.28127 6.75493 7.05422 7.32257 7.53898 8.87485 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.037080 B = 0.002877 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.946906 B = 9729.664312 C = 9843.656921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.177 4.177 3 C 0.107 3.893 4 H 0.090 0.910 5 O -0.381 6.381 6 C 0.047 3.953 7 C -0.165 4.165 8 C 0.137 3.863 9 H 0.087 0.913 10 N -0.724 5.724 11 C 0.702 3.298 12 O -0.635 6.635 13 N -0.731 5.731 14 C 0.147 3.853 15 C -0.099 4.099 16 C -0.012 4.012 17 C -0.530 4.530 18 H 0.038 0.962 19 C 0.004 3.996 20 N -0.951 5.951 21 Si 0.947 3.053 22 H -0.267 1.267 23 H -0.285 1.285 24 H -0.247 1.247 25 H 0.117 0.883 26 H 0.107 0.893 27 H 0.116 0.884 28 H 0.111 0.889 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.412 0.588 33 H 0.411 0.589 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.021 0.979 39 H 0.020 0.980 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.039 -13.504 -24.323 27.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.195 4.195 3 C 0.048 3.952 4 H 0.108 0.892 5 O -0.301 6.301 6 C -0.029 4.029 7 C -0.204 4.204 8 C 0.031 3.969 9 H 0.105 0.895 10 N -0.381 5.381 11 C 0.401 3.599 12 O -0.516 6.516 13 N -0.386 5.386 14 C 0.022 3.978 15 C -0.137 4.137 16 C -0.050 4.050 17 C -0.568 4.568 18 H 0.056 0.944 19 C -0.192 4.192 20 N -0.592 5.592 21 Si 0.771 3.229 22 H -0.192 1.192 23 H -0.211 1.211 24 H -0.171 1.171 25 H 0.135 0.865 26 H 0.125 0.875 27 H 0.134 0.866 28 H 0.129 0.871 29 H 0.093 0.907 30 H 0.099 0.901 31 H 0.105 0.895 32 H 0.249 0.751 33 H 0.248 0.752 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.039 0.961 39 H 0.038 0.962 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.466 -14.356 -23.902 27.920 hybrid contribution -0.064 0.704 0.830 1.090 sum 1.402 -13.651 -23.073 26.845 Atomic orbital electron populations 1.24131 0.95363 1.03462 0.96846 1.22855 0.96370 0.97417 1.02854 1.22030 0.91877 0.97143 0.84103 0.89228 1.88956 1.31088 1.76885 1.33126 1.23736 0.88119 0.96481 0.94588 1.23551 0.96447 1.03225 0.97142 1.22105 0.94030 0.89235 0.91559 0.89509 1.44952 1.65760 1.21580 1.05788 1.16077 0.79051 0.82898 0.81834 1.90897 1.50574 1.37165 1.72951 1.45046 1.65165 1.19365 1.09065 1.21148 1.00047 0.98059 0.78536 1.21468 1.01172 0.95293 0.95748 1.19466 0.96553 0.95319 0.93697 1.21474 1.38821 1.02487 0.94029 0.94373 1.25983 0.95908 0.97471 0.99883 1.70061 1.49293 1.26253 1.13590 0.85701 0.79049 0.80563 0.77628 1.19238 1.21104 1.17084 0.86497 0.87460 0.86570 0.87114 0.90713 0.90146 0.89478 0.75134 0.75229 0.92769 0.92621 0.91649 0.91695 0.96095 0.96185 0.92522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.05 14.32 67.78 0.97 -1.08 16 2 C -0.18 -2.72 8.94 25.64 0.23 -2.49 16 3 C 0.11 1.65 3.57 30.22 0.11 1.76 16 4 H 0.09 1.14 7.31 -2.39 -0.02 1.12 16 5 O -0.38 -6.59 11.17 -148.98 -1.66 -8.26 16 6 C 0.05 0.60 7.72 72.66 0.56 1.16 16 7 C -0.16 -2.66 6.88 31.90 0.22 -2.44 16 8 C 0.14 2.50 3.02 45.98 0.14 2.64 16 9 H 0.09 2.01 7.11 -2.39 -0.02 1.99 16 10 N -0.72 -13.18 5.08 -453.08 -2.30 -15.49 16 11 C 0.70 18.87 8.56 179.05 1.53 20.41 16 12 O -0.63 -23.00 15.99 -3.98 -0.06 -23.06 16 13 N -0.73 -18.15 5.56 -478.53 -2.66 -20.81 16 14 C 0.15 4.58 5.67 86.38 0.49 5.07 16 15 C -0.10 -3.48 5.27 30.59 0.16 -3.32 16 16 C -0.01 -0.56 4.04 29.85 0.12 -0.43 16 17 C -0.53 -29.86 9.66 25.60 0.25 -29.62 16 18 H 0.04 2.33 7.99 -2.91 -0.02 2.31 16 19 C 0.00 0.25 5.47 84.65 0.46 0.71 16 20 N -0.95 -59.26 13.96 21.45 0.30 -58.96 16 21 Si 0.95 44.20 27.47 68.60 1.88 46.08 16 22 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 23 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 24 H -0.25 -10.78 6.54 99.48 0.65 -10.13 16 25 H 0.12 1.18 8.06 -2.91 -0.02 1.16 16 26 H 0.11 1.16 7.85 -2.91 -0.02 1.14 16 27 H 0.12 1.76 8.06 -2.91 -0.02 1.73 16 28 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.08 1.44 8.06 -2.39 -0.02 1.42 16 31 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 32 H 0.41 4.85 8.36 -92.71 -0.77 4.08 16 33 H 0.41 7.59 8.49 -92.71 -0.79 6.80 16 34 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.02 0.94 7.20 -2.39 -0.02 0.92 16 39 H 0.02 0.88 7.57 -2.38 -0.02 0.86 16 40 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -72.64 334.48 0.15 -72.49 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -0.59 Total: 15.64 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: 5.24 Total: -7.63 kcal Atomic # 7 Polarization: -90.60 SS G_CDS: -4.66 Total: -95.26 kcal Atomic # 8 Polarization: -29.59 SS G_CDS: -1.73 Total: -31.32 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 1.88 Total: 46.08 kcal Total: -72.64 0.15 -72.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221837669.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.031 kcal (2) G-P(sol) polarization free energy of solvation -72.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds