Wall clock time and date at job start Mon Mar 30 2020 01:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.46785 * 2 1 4 4 H 1.08999 * 109.47003 * 56.59951 * 3 2 1 5 5 C 1.50700 * 109.46837 * 176.59654 * 3 2 1 6 6 H 1.07999 * 119.99928 * 120.00285 * 5 3 2 7 7 C 1.37875 * 119.99870 * 299.99815 * 5 3 2 8 8 N 1.31509 * 120.00476 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99837 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47358 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46910 * 119.99916 * 9 7 5 12 12 H 1.48500 * 109.47442 * 240.00029 * 9 7 5 13 13 N 1.46894 * 109.46866 * 296.59692 * 3 2 1 14 14 C 1.46920 * 110.99799 * 174.62006 * 13 3 2 15 15 C 1.53200 * 109.30118 * 187.49004 * 14 13 3 16 16 N 1.47453 * 108.47860 * 305.86595 * 15 14 13 17 17 C 1.34202 * 118.84545 * 230.67992 * 16 15 14 18 18 O 1.21280 * 119.29393 * 358.32730 * 17 16 15 19 19 C 1.50534 * 121.41811 * 178.33117 * 17 16 15 20 20 O 1.43138 * 108.60795 * 24.45634 * 19 17 16 21 21 C 1.42678 * 113.05663 * 304.00084 * 20 19 17 22 22 C 1.46033 * 118.26775 * 50.72006 * 16 15 14 23 23 H 1.08999 * 107.93463 * 67.74202 * 22 16 15 24 24 C 1.46916 * 111.00258 * 298.74545 * 13 3 2 25 25 H 1.09006 * 109.46789 * 185.06825 * 1 2 3 26 26 H 1.08993 * 109.47562 * 305.06873 * 1 2 3 27 27 H 1.09003 * 109.46930 * 65.07583 * 1 2 3 28 28 H 1.08993 * 109.47229 * 239.99993 * 2 1 3 29 29 H 1.09003 * 109.46633 * 119.99841 * 2 1 3 30 30 H 0.97002 * 120.00291 * 180.02562 * 8 7 5 31 31 H 1.08998 * 109.49853 * 307.43144 * 14 13 3 32 32 H 1.08995 * 109.50612 * 67.53907 * 14 13 3 33 33 H 1.09002 * 109.63270 * 186.17085 * 15 14 13 34 34 H 1.09001 * 109.80117 * 65.66320 * 15 14 13 35 35 H 1.09003 * 109.60713 * 264.72373 * 19 17 16 36 36 H 1.08999 * 109.61251 * 144.19984 * 19 17 16 37 37 H 1.08997 * 109.19841 * 303.95961 * 21 20 19 38 38 H 1.08997 * 109.19568 * 184.67792 * 21 20 19 39 39 H 1.08989 * 109.48640 * 293.32909 * 24 13 3 40 40 H 1.09002 * 109.47522 * 53.37244 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6277 1.9736 0.8579 5 6 3.5446 1.4434 0.0844 6 1 4.1293 1.8953 -0.7032 7 6 4.1747 0.8674 1.1670 8 7 3.4627 0.3167 2.1259 9 14 6.0398 0.8678 1.2712 10 1 6.6023 1.5441 0.0747 11 1 6.4670 1.5921 2.4952 12 1 6.5328 -0.5318 1.3269 13 7 1.6185 2.1108 -1.2384 14 6 1.9803 3.5346 -1.2177 15 6 1.3627 4.2317 -2.4341 16 7 1.7766 3.5057 -3.6489 17 6 2.3062 4.1990 -4.6687 18 8 2.4032 5.4046 -4.5796 19 6 2.7824 3.5123 -5.9208 20 8 2.0835 2.2703 -6.0546 21 6 2.2249 1.4240 -4.9147 22 6 1.5893 2.0579 -3.6869 23 1 0.5178 1.8585 -3.7058 24 6 2.1812 1.4384 -2.4173 25 1 -0.3633 -1.0237 0.0908 26 1 -0.3634 0.5904 0.8410 27 1 -0.3633 0.4331 -0.9320 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.9060 -0.0882 2.8878 31 1 1.6012 3.9931 -0.3043 32 1 3.0650 3.6351 -1.2527 33 1 1.7162 5.2616 -2.4846 34 1 0.2757 4.2211 -2.3534 35 1 3.8536 3.3237 -5.8497 36 1 2.5759 4.1434 -6.7852 37 1 3.2845 1.2551 -4.7229 38 1 1.7411 0.4682 -5.1157 39 1 3.2641 1.5613 -2.4235 40 1 1.9356 0.3770 -2.3820 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255173813.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:44 Heat of formation + Delta-G solvation = -65.768207 kcal Electronic energy + Delta-G solvation = -22138.316121 eV Core-core repulsion = 18953.334607 eV Total energy + Delta-G solvation = -3184.981514 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.72990 -37.96129 -37.64577 -35.12814 -32.50128 -31.80898 -31.21079 -29.17989 -27.21767 -25.89429 -25.00930 -23.04028 -22.52791 -20.88354 -19.28408 -18.87738 -17.56798 -16.72163 -16.42810 -15.71320 -15.49382 -14.96308 -14.75264 -14.39088 -14.14214 -13.90634 -13.80411 -13.14390 -12.81937 -12.60690 -12.31030 -11.76316 -11.69907 -11.46109 -11.27231 -11.24098 -11.00350 -10.90865 -10.67849 -10.61056 -10.53453 -10.05003 -9.78318 -9.55787 -9.27434 -9.20076 -8.49509 -8.47462 -7.31950 -6.10140 -4.23949 2.59198 2.96320 3.18225 3.27759 3.30288 3.71820 4.30265 4.32028 4.67584 4.92648 5.02772 5.10015 5.16688 5.21330 5.36711 5.54235 5.57808 5.71284 5.83706 5.90717 6.00968 6.22339 6.31744 6.36917 6.49106 6.56764 6.57407 6.62339 6.74733 6.97317 7.07800 7.17810 7.46845 7.55039 7.63848 7.81426 8.01045 8.13385 8.16340 8.30772 8.84924 9.44566 10.89392 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.020414 B = 0.006449 C = 0.005916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.268515 B = 4340.914500 C = 4731.538750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.112 4.112 3 C 0.215 3.785 4 H 0.042 0.958 5 C -0.546 4.546 6 H 0.055 0.945 7 C 0.070 3.930 8 N -0.883 5.883 9 Si 0.886 3.114 10 H -0.276 1.276 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.531 5.531 14 C 0.050 3.950 15 C 0.111 3.889 16 N -0.590 5.590 17 C 0.483 3.517 18 O -0.553 6.553 19 C 0.049 3.951 20 O -0.369 6.369 21 C 0.051 3.949 22 C 0.110 3.890 23 H 0.083 0.917 24 C 0.052 3.948 25 H 0.026 0.974 26 H 0.040 0.960 27 H 0.045 0.955 28 H 0.033 0.967 29 H 0.094 0.906 30 H 0.262 0.738 31 H 0.080 0.920 32 H 0.042 0.958 33 H 0.090 0.910 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.128 0.872 37 H 0.063 0.937 38 H 0.116 0.884 39 H 0.044 0.956 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.316 0.889 -10.972 11.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.151 4.151 3 C 0.109 3.891 4 H 0.060 0.940 5 C -0.585 4.585 6 H 0.073 0.927 7 C -0.132 4.132 8 N -0.521 5.521 9 Si 0.714 3.286 10 H -0.200 1.200 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.255 5.255 14 C -0.079 4.079 15 C -0.011 4.011 16 N -0.323 5.323 17 C 0.271 3.729 18 O -0.433 6.433 19 C -0.031 4.031 20 O -0.287 6.287 21 C -0.027 4.027 22 C 0.005 3.995 23 H 0.101 0.899 24 C -0.077 4.077 25 H 0.045 0.955 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.052 0.948 29 H 0.112 0.888 30 H 0.072 0.928 31 H 0.098 0.902 32 H 0.060 0.940 33 H 0.109 0.891 34 H 0.088 0.912 35 H 0.105 0.895 36 H 0.146 0.854 37 H 0.081 0.919 38 H 0.134 0.866 39 H 0.062 0.938 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.881 1.312 -10.929 11.671 hybrid contribution 2.150 -0.034 0.584 2.228 sum -1.731 1.279 -10.345 10.566 Atomic orbital electron populations 1.21702 0.98665 0.98512 1.00590 1.21640 0.92324 0.99002 1.02108 1.19325 0.92962 0.91105 0.85744 0.94032 1.21720 0.92609 1.37966 1.06241 0.92696 1.24890 0.97951 0.94889 0.95516 1.69868 1.34936 1.37648 1.09658 0.86633 0.86123 0.77769 0.78036 1.20027 1.20932 1.20909 1.62485 1.58087 1.01107 1.03835 1.22231 0.98809 0.90452 0.96429 1.21978 0.99628 0.96524 0.83006 1.47786 1.60600 1.07745 1.16182 1.21099 0.78036 0.87984 0.85812 1.90693 1.56732 1.14195 1.81652 1.22913 0.97709 0.85792 0.96639 1.88091 1.73131 1.28279 1.39205 1.22726 1.01375 0.94142 0.84426 1.21714 1.01758 0.79476 0.96519 0.89925 1.22289 0.97642 0.99025 0.88751 0.95494 0.94060 0.93614 0.94800 0.88822 0.92810 0.90205 0.94007 0.89126 0.91171 0.89523 0.85395 0.91911 0.86637 0.93752 0.89337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 9.72 37.16 0.36 -2.20 16 2 C -0.11 -2.44 5.03 -26.73 -0.13 -2.57 16 3 C 0.21 4.87 1.76 -68.87 -0.12 4.75 16 4 H 0.04 1.07 8.06 -51.93 -0.42 0.65 16 5 C -0.55 -13.73 7.22 -34.44 -0.25 -13.98 16 6 H 0.05 1.41 5.85 -52.49 -0.31 1.11 16 7 C 0.07 1.83 5.30 -17.82 -0.09 1.74 16 8 N -0.88 -23.73 11.30 55.43 0.63 -23.10 16 9 Si 0.89 20.43 29.54 -169.99 -5.02 15.41 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 N -0.53 -10.15 4.10 -227.78 -0.93 -11.08 16 14 C 0.05 0.92 5.24 -3.71 -0.02 0.90 16 15 C 0.11 1.80 6.52 -3.42 -0.02 1.78 16 16 N -0.59 -9.38 3.00 -166.23 -0.50 -9.88 16 17 C 0.48 7.71 7.65 -11.32 -0.09 7.63 16 18 O -0.55 -10.45 16.25 5.56 0.09 -10.36 16 19 C 0.05 0.59 7.00 35.92 0.25 0.85 16 20 O -0.37 -4.64 10.85 -35.23 -0.38 -5.03 16 21 C 0.05 0.60 6.25 36.70 0.23 0.83 16 22 C 0.11 1.57 3.31 -68.55 -0.23 1.35 16 23 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 24 C 0.05 0.89 4.17 -3.73 -0.02 0.88 16 25 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.04 0.80 7.85 -51.93 -0.41 0.39 16 28 H 0.03 0.71 6.12 -51.93 -0.32 0.39 16 29 H 0.09 2.32 5.99 -51.93 -0.31 2.01 16 30 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 31 H 0.08 1.45 8.04 -51.93 -0.42 1.04 16 32 H 0.04 0.86 7.05 -51.93 -0.37 0.50 16 33 H 0.09 1.51 6.86 -51.93 -0.36 1.16 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.13 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.06 0.72 7.88 -51.93 -0.41 0.31 16 38 H 0.12 1.09 8.14 -51.93 -0.42 0.66 16 39 H 0.04 0.85 6.56 -51.94 -0.34 0.51 16 40 H 0.09 1.48 5.95 -51.93 -0.31 1.17 16 LS Contribution 307.02 15.07 4.63 4.63 Total: -1.00 -28.52 307.02 -7.67 -36.20 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -6.05 Total: 1.27 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -0.13 Total: 1.95 kcal Atomic # 7 Polarization: -43.26 SS G_CDS: -0.81 Total: -44.06 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -0.29 Total: -15.38 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -28.52 -7.67 -36.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173813.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.571 kcal (2) G-P(sol) polarization free energy of solvation -28.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds