Wall clock time and date at job start Mon Mar 30 2020 01:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.46785 * 2 1 4 4 H 1.08999 * 109.47003 * 56.59951 * 3 2 1 5 5 C 1.50700 * 109.46837 * 176.59654 * 3 2 1 6 6 H 1.07999 * 119.99928 * 120.00285 * 5 3 2 7 7 C 1.37875 * 119.99870 * 299.99815 * 5 3 2 8 8 N 1.31509 * 120.00476 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99837 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47358 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46910 * 119.99916 * 9 7 5 12 12 H 1.48500 * 109.47442 * 240.00029 * 9 7 5 13 13 N 1.46894 * 109.46866 * 296.59692 * 3 2 1 14 14 C 1.46920 * 110.99799 * 174.62006 * 13 3 2 15 15 C 1.53200 * 109.30118 * 187.49004 * 14 13 3 16 16 N 1.47453 * 108.47860 * 305.86595 * 15 14 13 17 17 C 1.34202 * 118.84545 * 230.67992 * 16 15 14 18 18 O 1.21280 * 119.29393 * 358.32730 * 17 16 15 19 19 C 1.50534 * 121.41811 * 178.33117 * 17 16 15 20 20 O 1.43138 * 108.60795 * 24.45634 * 19 17 16 21 21 C 1.42678 * 113.05663 * 304.00084 * 20 19 17 22 22 C 1.46033 * 118.26775 * 50.72006 * 16 15 14 23 23 H 1.08999 * 107.93463 * 67.74202 * 22 16 15 24 24 C 1.46916 * 111.00258 * 298.74545 * 13 3 2 25 25 H 1.09006 * 109.46789 * 185.06825 * 1 2 3 26 26 H 1.08993 * 109.47562 * 305.06873 * 1 2 3 27 27 H 1.09003 * 109.46930 * 65.07583 * 1 2 3 28 28 H 1.08993 * 109.47229 * 239.99993 * 2 1 3 29 29 H 1.09003 * 109.46633 * 119.99841 * 2 1 3 30 30 H 0.97002 * 120.00291 * 180.02562 * 8 7 5 31 31 H 1.08998 * 109.49853 * 307.43144 * 14 13 3 32 32 H 1.08995 * 109.50612 * 67.53907 * 14 13 3 33 33 H 1.09002 * 109.63270 * 186.17085 * 15 14 13 34 34 H 1.09001 * 109.80117 * 65.66320 * 15 14 13 35 35 H 1.09003 * 109.60713 * 264.72373 * 19 17 16 36 36 H 1.08999 * 109.61251 * 144.19984 * 19 17 16 37 37 H 1.08997 * 109.19841 * 303.95961 * 21 20 19 38 38 H 1.08997 * 109.19568 * 184.67792 * 21 20 19 39 39 H 1.08989 * 109.48640 * 293.32909 * 24 13 3 40 40 H 1.09002 * 109.47522 * 53.37244 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6277 1.9736 0.8579 5 6 3.5446 1.4434 0.0844 6 1 4.1293 1.8953 -0.7032 7 6 4.1747 0.8674 1.1670 8 7 3.4627 0.3167 2.1259 9 14 6.0398 0.8678 1.2712 10 1 6.6023 1.5441 0.0747 11 1 6.4670 1.5921 2.4952 12 1 6.5328 -0.5318 1.3269 13 7 1.6185 2.1108 -1.2384 14 6 1.9803 3.5346 -1.2177 15 6 1.3627 4.2317 -2.4341 16 7 1.7766 3.5057 -3.6489 17 6 2.3062 4.1990 -4.6687 18 8 2.4032 5.4046 -4.5796 19 6 2.7824 3.5123 -5.9208 20 8 2.0835 2.2703 -6.0546 21 6 2.2249 1.4240 -4.9147 22 6 1.5893 2.0579 -3.6869 23 1 0.5178 1.8585 -3.7058 24 6 2.1812 1.4384 -2.4173 25 1 -0.3633 -1.0237 0.0908 26 1 -0.3634 0.5904 0.8410 27 1 -0.3633 0.4331 -0.9320 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.9060 -0.0882 2.8878 31 1 1.6012 3.9931 -0.3043 32 1 3.0650 3.6351 -1.2527 33 1 1.7162 5.2616 -2.4846 34 1 0.2757 4.2211 -2.3534 35 1 3.8536 3.3237 -5.8497 36 1 2.5759 4.1434 -6.7852 37 1 3.2845 1.2551 -4.7229 38 1 1.7411 0.4682 -5.1157 39 1 3.2641 1.5613 -2.4235 40 1 1.9356 0.3770 -2.3820 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255173813.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:43 Heat of formation + Delta-G solvation = -85.483375 kcal Electronic energy + Delta-G solvation = -22139.171034 eV Core-core repulsion = 18953.334607 eV Total energy + Delta-G solvation = -3185.836428 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.94702 -39.46427 -38.76146 -36.62952 -34.29068 -33.18647 -32.74781 -30.39971 -28.81833 -27.20784 -26.48255 -24.69947 -23.80316 -22.34890 -20.97332 -20.09262 -18.88012 -18.15963 -17.88204 -17.10883 -16.67909 -16.60884 -16.02241 -15.79896 -15.54247 -15.36907 -15.14108 -14.77790 -14.21491 -13.95994 -13.81468 -13.34560 -13.19148 -12.95116 -12.82375 -12.67132 -12.55705 -12.47717 -12.33116 -12.09156 -11.82586 -11.59712 -11.55234 -11.24117 -11.02906 -10.46374 -10.38830 -9.83237 -9.01388 -8.06820 -6.28539 1.32663 1.37455 1.37681 1.44947 1.77268 2.36920 2.75411 3.12474 3.15490 3.35170 3.81987 3.91807 3.95815 4.16210 4.20300 4.32841 4.38924 4.50195 4.56655 4.65720 4.71287 4.75013 4.77073 4.87190 4.95878 5.01955 5.14569 5.21255 5.31828 5.46194 5.48367 5.61110 5.73013 5.79620 6.03309 6.14358 6.30126 6.38797 6.55552 6.91110 6.92274 7.42637 8.88599 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.020414 B = 0.006449 C = 0.005916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.268515 B = 4340.914500 C = 4731.538750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.106 4.106 3 C 0.221 3.779 4 H 0.006 0.994 5 C -0.550 4.550 6 H 0.044 0.956 7 C 0.027 3.973 8 N -0.907 5.907 9 Si 0.941 3.059 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.277 1.277 13 N -0.525 5.525 14 C 0.056 3.944 15 C 0.120 3.880 16 N -0.597 5.597 17 C 0.476 3.524 18 O -0.588 6.588 19 C 0.055 3.945 20 O -0.369 6.369 21 C 0.053 3.947 22 C 0.116 3.884 23 H 0.093 0.907 24 C 0.057 3.943 25 H 0.045 0.955 26 H 0.030 0.970 27 H 0.059 0.941 28 H 0.041 0.959 29 H 0.061 0.939 30 H 0.262 0.738 31 H 0.074 0.926 32 H 0.013 0.987 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.106 0.894 36 H 0.149 0.851 37 H 0.067 0.933 38 H 0.146 0.854 39 H 0.021 0.979 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.599 0.099 -13.014 13.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.144 4.144 3 C 0.114 3.886 4 H 0.024 0.976 5 C -0.589 4.589 6 H 0.063 0.937 7 C -0.174 4.174 8 N -0.546 5.546 9 Si 0.768 3.232 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.203 1.203 13 N -0.248 5.248 14 C -0.073 4.073 15 C -0.003 4.003 16 N -0.329 5.329 17 C 0.265 3.735 18 O -0.470 6.470 19 C -0.024 4.024 20 O -0.286 6.286 21 C -0.024 4.024 22 C 0.012 3.988 23 H 0.111 0.889 24 C -0.072 4.072 25 H 0.064 0.936 26 H 0.049 0.951 27 H 0.078 0.922 28 H 0.060 0.940 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.032 0.968 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.124 0.876 36 H 0.167 0.833 37 H 0.085 0.915 38 H 0.164 0.836 39 H 0.039 0.961 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.167 0.507 -12.990 13.651 hybrid contribution 2.236 0.247 1.239 2.568 sum -1.932 0.754 -11.751 11.932 Atomic orbital electron populations 1.21567 0.96096 0.99715 1.00879 1.21467 0.94540 0.97598 1.00839 1.19087 0.91459 0.91782 0.86252 0.97622 1.21929 0.94022 1.37199 1.05752 0.93744 1.25512 1.01373 0.94984 0.95500 1.69983 1.36149 1.38412 1.10058 0.85785 0.82068 0.77786 0.77605 1.20141 1.21074 1.20296 1.62429 1.57790 1.01254 1.03348 1.22162 0.97131 0.90417 0.97608 1.21791 1.00088 0.95948 0.82444 1.47952 1.60483 1.08511 1.15986 1.21892 0.77112 0.87760 0.86748 1.90675 1.58025 1.15840 1.82481 1.23022 0.98530 0.85676 0.95165 1.88113 1.73257 1.28182 1.39057 1.22834 1.01814 0.94756 0.82995 1.21774 1.02363 0.78383 0.96255 0.88936 1.22298 0.96304 0.99535 0.89106 0.93561 0.95105 0.92159 0.94040 0.92024 0.92861 0.90713 0.96839 0.89718 0.89811 0.87595 0.83296 0.91491 0.83593 0.96089 0.88599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.49 9.72 71.98 0.70 -3.79 16 2 C -0.11 -4.57 5.03 30.60 0.15 -4.42 16 3 C 0.22 10.22 1.76 44.17 0.08 10.30 16 4 H 0.01 0.31 8.06 -2.39 -0.02 0.29 16 5 C -0.55 -28.17 7.22 25.60 0.18 -27.99 16 6 H 0.04 2.34 5.85 -2.91 -0.02 2.32 16 7 C 0.03 1.41 5.30 84.65 0.45 1.86 16 8 N -0.91 -49.66 11.30 21.45 0.24 -49.42 16 9 Si 0.94 42.35 29.54 68.60 2.03 44.38 16 10 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 12 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 13 N -0.52 -19.97 4.10 -874.56 -3.59 -23.56 16 14 C 0.06 2.11 5.24 86.37 0.45 2.56 16 15 C 0.12 3.85 6.52 86.26 0.56 4.41 16 16 N -0.60 -18.11 3.00 -798.53 -2.39 -20.50 16 17 C 0.48 14.40 7.65 87.69 0.67 15.07 16 18 O -0.59 -21.76 16.25 -3.03 -0.05 -21.81 16 19 C 0.06 1.17 7.00 71.18 0.50 1.67 16 20 O -0.37 -7.89 10.85 -148.98 -1.62 -9.51 16 21 C 0.05 1.07 6.25 71.68 0.45 1.52 16 22 C 0.12 3.05 3.31 44.84 0.15 3.20 16 23 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 24 C 0.06 1.86 4.17 86.36 0.36 2.22 16 25 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 26 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.06 1.97 7.85 -2.39 -0.02 1.95 16 28 H 0.04 1.69 6.12 -2.39 -0.01 1.68 16 29 H 0.06 3.09 5.99 -2.39 -0.01 3.08 16 30 H 0.26 13.73 8.31 -92.71 -0.77 12.96 16 31 H 0.07 2.82 8.04 -2.39 -0.02 2.80 16 32 H 0.01 0.57 7.05 -2.39 -0.02 0.56 16 33 H 0.08 2.84 6.86 -2.39 -0.02 2.82 16 34 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 35 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.15 2.57 8.14 -2.39 -0.02 2.55 16 37 H 0.07 1.32 7.88 -2.39 -0.02 1.30 16 38 H 0.15 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.02 0.79 6.56 -2.39 -0.02 0.78 16 40 H 0.10 3.01 5.95 -2.39 -0.01 3.00 16 Total: -1.00 -62.05 307.02 0.36 -61.69 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: 1.03 Total: 12.13 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: 4.70 Total: 6.60 kcal Atomic # 7 Polarization: -87.74 SS G_CDS: -5.74 Total: -93.48 kcal Atomic # 8 Polarization: -29.66 SS G_CDS: -1.67 Total: -31.32 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -62.05 0.36 -61.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173813.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.790 kcal (2) G-P(sol) polarization free energy of solvation -62.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds