Wall clock time and date at job start Mon Mar 30 2020 01:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46844 * 2 1 4 4 H 1.09006 * 109.46840 * 181.59452 * 3 2 1 5 5 C 1.50695 * 109.47609 * 61.59029 * 3 2 1 6 6 H 1.07998 * 120.00380 * 240.00022 * 5 3 2 7 7 C 1.37883 * 119.99912 * 59.99648 * 5 3 2 8 8 N 1.31516 * 119.99695 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 119.99861 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47604 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46840 * 120.00243 * 9 7 5 12 12 H 1.48501 * 109.47118 * 239.99707 * 9 7 5 13 13 N 1.46904 * 109.47280 * 301.58786 * 3 2 1 14 14 C 1.46856 * 110.99826 * 301.71236 * 13 3 2 15 15 C 1.53137 * 109.45699 * 173.67650 * 14 13 3 16 16 C 1.52590 * 109.31237 * 58.32254 * 15 14 13 17 17 C 1.53641 * 110.26610 * 181.51138 * 16 15 14 18 18 N 1.47226 * 103.58490 * 241.09267 * 17 16 15 19 19 C 1.34073 * 108.84954 * 359.97438 * 18 17 16 20 20 O 1.21508 * 123.09395 * 179.97438 * 19 18 17 21 21 O 1.33933 * 113.82083 * 359.97438 * 19 18 17 22 22 C 1.52591 * 110.40633 * 303.60215 * 16 15 14 23 23 C 1.46836 * 111.00119 * 177.35576 * 13 3 2 24 24 H 1.08992 * 109.47175 * 54.53447 * 1 2 3 25 25 H 1.09000 * 109.46739 * 174.54361 * 1 2 3 26 26 H 1.09007 * 109.46731 * 294.54019 * 1 2 3 27 27 H 1.09001 * 109.47183 * 119.99379 * 2 1 3 28 28 H 1.08993 * 109.47088 * 239.99855 * 2 1 3 29 29 H 0.97004 * 119.99425 * 179.97438 * 8 7 5 30 30 H 1.08998 * 109.47238 * 293.67384 * 14 13 3 31 31 H 1.08996 * 109.47284 * 53.68280 * 14 13 3 32 32 H 1.09000 * 109.50099 * 298.37204 * 15 14 13 33 33 H 1.09000 * 109.52167 * 178.28382 * 15 14 13 34 34 H 1.08996 * 110.59517 * 359.61944 * 17 16 15 35 35 H 1.09001 * 110.60189 * 122.41085 * 17 16 15 36 36 H 0.96994 * 125.57206 * 179.97438 * 18 17 16 37 37 H 1.09002 * 109.49874 * 296.44320 * 22 16 15 38 38 H 1.08997 * 109.52416 * 176.36216 * 22 16 15 39 39 H 1.08995 * 109.47705 * 306.31820 * 23 13 3 40 40 H 1.09008 * 109.47533 * 66.32380 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1297 1.4426 -0.0286 5 6 1.5701 2.1415 1.2496 6 1 0.9470 3.0204 1.1750 7 6 1.9358 1.6589 2.4884 8 7 2.6951 0.5889 2.5793 9 14 1.3528 2.5250 4.0374 10 1 0.5168 3.6947 3.6658 11 1 0.5494 1.5836 4.8582 12 1 2.5284 2.9846 4.8198 13 7 1.5192 2.1460 -1.1798 14 6 1.9243 1.4682 -2.4180 15 6 1.2362 2.1345 -3.6129 16 6 1.6130 3.6127 -3.6524 17 6 0.9037 4.3116 -4.8224 18 7 2.0135 4.7999 -5.6576 19 6 3.1738 4.4519 -5.0828 20 8 4.2580 4.7263 -5.5578 21 8 3.0279 3.7740 -3.9370 22 6 1.2500 4.2897 -2.3340 23 6 1.9376 3.5535 -1.1805 24 1 -0.3633 0.5962 -0.8369 25 1 -0.3633 -1.0230 -0.0977 26 1 -0.3633 0.4269 0.9349 27 1 1.8934 -0.5137 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 2.9526 0.2497 3.4508 30 1 3.0056 1.5404 -2.5347 31 1 1.6332 0.4190 -2.3698 32 1 0.1553 2.0373 -3.5110 33 1 1.5596 1.6519 -4.5351 34 1 0.2895 3.6024 -5.3772 35 1 0.2973 5.1426 -4.4621 36 1 1.9204 5.2927 -6.4878 37 1 0.1695 4.2572 -2.1936 38 1 1.5832 5.3273 -2.3535 39 1 1.6563 4.0167 -0.2348 40 1 3.0189 3.6112 -1.3058 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255174855.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:13 Heat of formation + Delta-G solvation = -69.244779 kcal Electronic energy + Delta-G solvation = -21927.554626 eV Core-core repulsion = 18742.422356 eV Total energy + Delta-G solvation = -3185.132270 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.79476 -38.45589 -36.89234 -34.76684 -34.24607 -31.88032 -30.94630 -30.18564 -27.18393 -25.63719 -23.64805 -22.76198 -22.54419 -22.06147 -20.16152 -18.98854 -17.40675 -16.60556 -16.39904 -16.13754 -15.55582 -14.85368 -14.44274 -14.37867 -13.89341 -13.77008 -13.72484 -13.34368 -13.06296 -12.88580 -12.16786 -11.95801 -11.63172 -11.45391 -11.27935 -10.98123 -10.91887 -10.86514 -10.68729 -10.51303 -10.20079 -9.99968 -9.90119 -9.65405 -9.46947 -9.38919 -8.77531 -8.40605 -7.17789 -6.01214 -4.05057 2.71945 2.75099 3.28602 3.37215 3.39802 3.49998 4.05932 4.39307 4.49463 4.64609 4.88351 5.07240 5.21059 5.24418 5.30758 5.49903 5.71733 5.79139 5.87909 5.93745 5.98729 6.25437 6.40887 6.47318 6.56689 6.62340 6.66596 6.71668 6.77464 7.11225 7.31551 7.31795 7.40978 7.63978 7.73469 7.82327 8.07614 8.15310 8.32845 8.57806 9.00059 9.59053 11.05265 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.029411 B = 0.005242 C = 0.004973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.797838 B = 5340.459145 C = 5628.706614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.112 4.112 3 C 0.217 3.783 4 H -0.002 1.002 5 C -0.497 4.497 6 H 0.063 0.937 7 C 0.060 3.940 8 N -0.891 5.891 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.286 1.286 13 N -0.528 5.528 14 C 0.050 3.950 15 C -0.111 4.111 16 C 0.098 3.902 17 C 0.073 3.927 18 N -0.740 5.740 19 C 0.643 3.357 20 O -0.533 6.533 21 O -0.310 6.310 22 C -0.115 4.115 23 C 0.064 3.936 24 H 0.046 0.954 25 H 0.014 0.986 26 H 0.054 0.946 27 H 0.092 0.908 28 H 0.014 0.986 29 H 0.259 0.741 30 H 0.028 0.972 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.067 0.933 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.431 0.569 37 H 0.093 0.907 38 H 0.068 0.932 39 H 0.093 0.907 40 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.158 5.122 -13.043 15.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.150 4.150 3 C 0.111 3.889 4 H 0.016 0.984 5 C -0.536 4.536 6 H 0.081 0.919 7 C -0.141 4.141 8 N -0.530 5.530 9 Si 0.721 3.279 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.212 1.212 13 N -0.254 5.254 14 C -0.078 4.078 15 C -0.149 4.149 16 C 0.061 3.939 17 C -0.052 4.052 18 N -0.413 5.413 19 C 0.396 3.604 20 O -0.419 6.419 21 O -0.220 6.220 22 C -0.153 4.153 23 C -0.065 4.065 24 H 0.066 0.934 25 H 0.033 0.967 26 H 0.073 0.927 27 H 0.110 0.890 28 H 0.032 0.968 29 H 0.069 0.931 30 H 0.047 0.953 31 H 0.099 0.901 32 H 0.111 0.889 33 H 0.086 0.914 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.273 0.727 37 H 0.111 0.889 38 H 0.087 0.913 39 H 0.111 0.889 40 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -6.815 4.931 -12.774 15.295 hybrid contribution 0.443 0.651 0.400 0.883 sum -6.372 5.582 -12.374 14.996 Atomic orbital electron populations 1.21460 0.97291 0.97223 1.01806 1.21587 0.95141 0.98186 1.00136 1.19240 0.92693 0.90800 0.86134 0.98429 1.21088 1.30990 1.11872 0.89607 0.91889 1.24905 0.95203 0.95076 0.98946 1.69890 1.36430 1.22667 1.24056 0.86531 0.78427 0.79613 0.83370 1.19794 1.21109 1.21234 1.62059 1.60127 1.01081 1.02100 1.22041 0.97017 0.98892 0.89872 1.21863 1.02327 0.91167 0.99576 1.23013 0.76651 0.98385 0.95890 1.22962 0.90458 1.00001 0.91731 1.46013 1.06034 1.61257 1.28002 1.18736 0.84944 0.77072 0.79677 1.91043 1.26574 1.59275 1.65017 1.87388 1.27951 1.69098 1.37572 1.21933 1.02478 0.98591 0.92254 1.21914 0.96637 0.90300 0.97628 0.93448 0.96708 0.92737 0.88996 0.96768 0.93062 0.95347 0.90139 0.88861 0.91407 0.88941 0.88846 0.72710 0.88903 0.91347 0.88925 0.95432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.49 9.49 37.16 0.35 -2.14 16 2 C -0.11 -2.57 5.05 -26.73 -0.13 -2.70 16 3 C 0.22 5.17 1.76 -68.86 -0.12 5.05 16 4 H 0.00 -0.05 8.14 -51.93 -0.42 -0.47 16 5 C -0.50 -12.74 6.76 -34.44 -0.23 -12.97 16 6 H 0.06 1.61 6.51 -52.49 -0.34 1.26 16 7 C 0.06 1.59 5.30 -17.82 -0.09 1.49 16 8 N -0.89 -24.73 11.31 55.43 0.63 -24.10 16 9 Si 0.89 20.69 29.54 -169.99 -5.02 15.66 16 10 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 13 N -0.53 -10.29 3.57 -227.95 -0.81 -11.11 16 14 C 0.05 0.86 5.11 -3.78 -0.02 0.84 16 15 C -0.11 -1.42 4.94 -26.87 -0.13 -1.55 16 16 C 0.10 1.24 0.92 -90.71 -0.08 1.15 16 17 C 0.07 0.63 7.34 -3.31 -0.02 0.60 16 18 N -0.74 -7.54 6.41 -64.82 -0.42 -7.96 16 19 C 0.64 9.92 9.16 53.74 0.49 10.41 16 20 O -0.53 -10.23 18.04 -19.10 -0.34 -10.57 16 21 O -0.31 -5.06 9.87 -38.24 -0.38 -5.43 16 22 C -0.11 -1.54 4.94 -26.87 -0.13 -1.67 16 23 C 0.06 1.16 5.15 -3.78 -0.02 1.14 16 24 H 0.05 0.91 7.39 -51.93 -0.38 0.53 16 25 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.05 1.23 7.46 -51.93 -0.39 0.84 16 27 H 0.09 2.39 6.03 -51.93 -0.31 2.08 16 28 H 0.01 0.29 6.33 -51.93 -0.33 -0.03 16 29 H 0.26 6.91 8.31 -40.82 -0.34 6.58 16 30 H 0.03 0.54 7.95 -51.93 -0.41 0.13 16 31 H 0.08 1.38 5.97 -51.93 -0.31 1.07 16 32 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.09 0.59 7.71 -51.93 -0.40 0.19 16 35 H 0.09 0.62 7.71 -51.93 -0.40 0.22 16 36 H 0.43 3.21 8.96 -40.82 -0.37 2.84 16 37 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.09 1.83 6.11 -51.93 -0.32 1.51 16 40 H 0.03 0.56 7.95 -51.92 -0.41 0.15 16 LS Contribution 309.26 15.07 4.66 4.66 Total: -1.00 -30.83 309.26 -7.88 -38.71 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -6.05 Total: 0.47 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -0.15 Total: -0.34 kcal Atomic # 7 Polarization: -42.56 SS G_CDS: -0.60 Total: -43.16 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: -0.72 Total: -16.00 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.83 -7.88 -38.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255174855.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.537 kcal (2) G-P(sol) polarization free energy of solvation -30.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds