Wall clock time and date at job start Mon Mar 30 2020 01:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46844 * 2 1 4 4 H 1.09006 * 109.46840 * 181.59452 * 3 2 1 5 5 C 1.50695 * 109.47609 * 61.59029 * 3 2 1 6 6 H 1.07998 * 120.00380 * 240.00022 * 5 3 2 7 7 C 1.37883 * 119.99912 * 59.99648 * 5 3 2 8 8 N 1.31516 * 119.99695 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 119.99861 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47604 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46840 * 120.00243 * 9 7 5 12 12 H 1.48501 * 109.47118 * 239.99707 * 9 7 5 13 13 N 1.46904 * 109.47280 * 301.58786 * 3 2 1 14 14 C 1.46856 * 110.99826 * 301.71236 * 13 3 2 15 15 C 1.53137 * 109.45699 * 173.67650 * 14 13 3 16 16 C 1.52590 * 109.31237 * 58.32254 * 15 14 13 17 17 C 1.53641 * 110.26610 * 181.51138 * 16 15 14 18 18 N 1.47226 * 103.58490 * 241.09267 * 17 16 15 19 19 C 1.34073 * 108.84954 * 359.97438 * 18 17 16 20 20 O 1.21508 * 123.09395 * 179.97438 * 19 18 17 21 21 O 1.33933 * 113.82083 * 359.97438 * 19 18 17 22 22 C 1.52591 * 110.40633 * 303.60215 * 16 15 14 23 23 C 1.46836 * 111.00119 * 177.35576 * 13 3 2 24 24 H 1.08992 * 109.47175 * 54.53447 * 1 2 3 25 25 H 1.09000 * 109.46739 * 174.54361 * 1 2 3 26 26 H 1.09007 * 109.46731 * 294.54019 * 1 2 3 27 27 H 1.09001 * 109.47183 * 119.99379 * 2 1 3 28 28 H 1.08993 * 109.47088 * 239.99855 * 2 1 3 29 29 H 0.97004 * 119.99425 * 179.97438 * 8 7 5 30 30 H 1.08998 * 109.47238 * 293.67384 * 14 13 3 31 31 H 1.08996 * 109.47284 * 53.68280 * 14 13 3 32 32 H 1.09000 * 109.50099 * 298.37204 * 15 14 13 33 33 H 1.09000 * 109.52167 * 178.28382 * 15 14 13 34 34 H 1.08996 * 110.59517 * 359.61944 * 17 16 15 35 35 H 1.09001 * 110.60189 * 122.41085 * 17 16 15 36 36 H 0.96994 * 125.57206 * 179.97438 * 18 17 16 37 37 H 1.09002 * 109.49874 * 296.44320 * 22 16 15 38 38 H 1.08997 * 109.52416 * 176.36216 * 22 16 15 39 39 H 1.08995 * 109.47705 * 306.31820 * 23 13 3 40 40 H 1.09008 * 109.47533 * 66.32380 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1297 1.4426 -0.0286 5 6 1.5701 2.1415 1.2496 6 1 0.9470 3.0204 1.1750 7 6 1.9358 1.6589 2.4884 8 7 2.6951 0.5889 2.5793 9 14 1.3528 2.5250 4.0374 10 1 0.5168 3.6947 3.6658 11 1 0.5494 1.5836 4.8582 12 1 2.5284 2.9846 4.8198 13 7 1.5192 2.1460 -1.1798 14 6 1.9243 1.4682 -2.4180 15 6 1.2362 2.1345 -3.6129 16 6 1.6130 3.6127 -3.6524 17 6 0.9037 4.3116 -4.8224 18 7 2.0135 4.7999 -5.6576 19 6 3.1738 4.4519 -5.0828 20 8 4.2580 4.7263 -5.5578 21 8 3.0279 3.7740 -3.9370 22 6 1.2500 4.2897 -2.3340 23 6 1.9376 3.5535 -1.1805 24 1 -0.3633 0.5962 -0.8369 25 1 -0.3633 -1.0230 -0.0977 26 1 -0.3633 0.4269 0.9349 27 1 1.8934 -0.5137 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 2.9526 0.2497 3.4508 30 1 3.0056 1.5404 -2.5347 31 1 1.6332 0.4190 -2.3698 32 1 0.1553 2.0373 -3.5110 33 1 1.5596 1.6519 -4.5351 34 1 0.2895 3.6024 -5.3772 35 1 0.2973 5.1426 -4.4621 36 1 1.9204 5.2927 -6.4878 37 1 0.1695 4.2572 -2.1936 38 1 1.5832 5.3273 -2.3535 39 1 1.6563 4.0167 -0.2348 40 1 3.0189 3.6112 -1.3058 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255174855.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:12 Heat of formation + Delta-G solvation = -92.604337 kcal Electronic energy + Delta-G solvation = -21928.567572 eV Core-core repulsion = 18742.422356 eV Total energy + Delta-G solvation = -3186.145216 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.85137 -39.85459 -38.29631 -35.91544 -35.66732 -33.65857 -32.33125 -31.62304 -28.71171 -27.09935 -25.24107 -24.11616 -23.63457 -23.38041 -21.48528 -20.66456 -18.50870 -18.12973 -17.65786 -17.58414 -17.08170 -16.10013 -15.93200 -15.75580 -15.30115 -15.07169 -14.93103 -14.71711 -14.37710 -14.19608 -13.84260 -13.48306 -13.01026 -12.80412 -12.73616 -12.68440 -12.52507 -12.32778 -12.09394 -12.01636 -11.88551 -11.66830 -11.36879 -11.31173 -11.05917 -10.68226 -10.42650 -10.28042 -8.90461 -8.05719 -6.15728 1.42593 1.45200 1.55468 1.61581 1.78673 2.44922 2.60336 3.18471 3.22773 3.38399 3.56106 3.62077 4.13688 4.28476 4.45759 4.49571 4.52162 4.62707 4.63871 4.75231 4.81094 4.83970 4.91371 4.96043 5.02414 5.12285 5.17493 5.26641 5.34775 5.51027 5.57566 5.76608 5.83202 5.84035 5.94298 6.29856 6.34623 6.42362 6.77685 6.98227 7.07004 7.52206 9.00343 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.029411 B = 0.005242 C = 0.004973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.797838 B = 5340.459145 C = 5628.706614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.108 4.108 3 C 0.221 3.779 4 H -0.058 1.058 5 C -0.499 4.499 6 H 0.065 0.935 7 C 0.010 3.990 8 N -0.923 5.923 9 Si 0.953 3.047 10 H -0.262 1.262 11 H -0.282 1.282 12 H -0.290 1.290 13 N -0.516 5.516 14 C 0.048 3.952 15 C -0.102 4.102 16 C 0.087 3.913 17 C 0.083 3.917 18 N -0.715 5.715 19 C 0.636 3.364 20 O -0.586 6.586 21 O -0.344 6.344 22 C -0.104 4.104 23 C 0.062 3.938 24 H 0.065 0.935 25 H 0.036 0.964 26 H 0.032 0.968 27 H 0.057 0.943 28 H 0.026 0.974 29 H 0.258 0.742 30 H -0.006 1.006 31 H 0.080 0.920 32 H 0.126 0.874 33 H 0.085 0.915 34 H 0.131 0.869 35 H 0.127 0.873 36 H 0.446 0.554 37 H 0.123 0.877 38 H 0.080 0.920 39 H 0.073 0.927 40 H -0.009 1.009 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.642 6.225 -14.849 19.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.147 4.147 3 C 0.114 3.886 4 H -0.041 1.041 5 C -0.538 4.538 6 H 0.083 0.917 7 C -0.188 4.188 8 N -0.564 5.564 9 Si 0.780 3.220 10 H -0.186 1.186 11 H -0.208 1.208 12 H -0.216 1.216 13 N -0.241 5.241 14 C -0.081 4.081 15 C -0.140 4.140 16 C 0.051 3.949 17 C -0.040 4.040 18 N -0.388 5.388 19 C 0.389 3.611 20 O -0.475 6.475 21 O -0.255 6.255 22 C -0.142 4.142 23 C -0.066 4.066 24 H 0.084 0.916 25 H 0.055 0.945 26 H 0.051 0.949 27 H 0.076 0.924 28 H 0.045 0.955 29 H 0.067 0.933 30 H 0.013 0.987 31 H 0.098 0.902 32 H 0.144 0.856 33 H 0.104 0.896 34 H 0.148 0.852 35 H 0.145 0.855 36 H 0.291 0.709 37 H 0.141 0.859 38 H 0.099 0.901 39 H 0.091 0.909 40 H 0.009 0.991 Dipole moment (debyes) X Y Z Total from point charges -10.360 6.054 -14.611 18.907 hybrid contribution 1.573 0.278 0.973 1.870 sum -8.788 6.332 -13.638 17.416 Atomic orbital electron populations 1.21313 0.94911 0.98836 1.01305 1.21448 0.97089 0.97075 0.99043 1.19037 0.89487 0.92174 0.87939 1.04056 1.21333 1.30340 1.11688 0.90393 0.91729 1.25669 0.95473 0.95731 1.01948 1.70048 1.37756 1.24119 1.24458 0.85571 0.77831 0.78884 0.79759 1.18550 1.20794 1.21619 1.62066 1.58951 1.01457 1.01595 1.22129 0.95720 0.99461 0.90768 1.21874 1.03575 0.90939 0.97592 1.23255 0.75648 0.98739 0.97287 1.23174 0.89357 1.01645 0.89833 1.45902 1.04835 1.59911 1.28145 1.18932 0.85560 0.77032 0.79557 1.90993 1.28903 1.61339 1.66288 1.87377 1.30563 1.69317 1.38196 1.21892 1.03523 0.98368 0.90392 1.21912 0.95173 0.90160 0.99376 0.91615 0.94460 0.94927 0.92447 0.95543 0.93303 0.98724 0.90194 0.85619 0.89613 0.85150 0.85462 0.70875 0.85873 0.90130 0.90882 0.99066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.26 9.49 71.98 0.68 -3.57 16 2 C -0.11 -5.06 5.05 30.60 0.15 -4.90 16 3 C 0.22 10.96 1.76 44.17 0.08 11.04 16 4 H -0.06 -3.45 8.14 -2.38 -0.02 -3.47 16 5 C -0.50 -26.25 6.76 25.60 0.17 -26.07 16 6 H 0.06 3.31 6.51 -2.91 -0.02 3.30 16 7 C 0.01 0.53 5.30 84.66 0.45 0.98 16 8 N -0.92 -53.36 11.31 21.45 0.24 -53.12 16 9 Si 0.95 43.04 29.54 68.60 2.03 45.07 16 10 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 11 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 12 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 13 N -0.52 -20.16 3.57 -875.09 -3.13 -23.29 16 14 C 0.05 1.61 5.11 86.36 0.44 2.05 16 15 C -0.10 -2.25 4.94 30.50 0.15 -2.09 16 16 C 0.09 1.92 0.92 -10.85 -0.01 1.91 16 17 C 0.08 0.94 7.34 86.46 0.63 1.57 16 18 N -0.71 -11.86 6.41 -590.53 -3.78 -15.65 16 19 C 0.64 18.89 9.16 129.90 1.19 20.08 16 20 O -0.59 -22.73 18.04 19.65 0.35 -22.37 16 21 O -0.34 -11.02 9.87 -48.82 -0.48 -11.51 16 22 C -0.10 -2.50 4.94 30.51 0.15 -2.35 16 23 C 0.06 2.31 5.15 86.36 0.44 2.75 16 24 H 0.06 2.36 7.39 -2.39 -0.02 2.34 16 25 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.03 1.42 7.46 -2.38 -0.02 1.41 16 27 H 0.06 3.10 6.03 -2.39 -0.01 3.09 16 28 H 0.03 1.13 6.33 -2.39 -0.02 1.12 16 29 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 30 H -0.01 -0.23 7.95 -2.39 -0.02 -0.25 16 31 H 0.08 2.68 5.97 -2.39 -0.01 2.66 16 32 H 0.13 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.13 0.67 7.71 -2.39 -0.02 0.65 16 35 H 0.13 0.75 7.71 -2.39 -0.02 0.73 16 36 H 0.45 4.86 8.96 -92.71 -0.83 4.03 16 37 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.07 2.94 6.11 -2.39 -0.01 2.93 16 40 H -0.01 -0.39 7.95 -2.38 -0.02 -0.41 16 Total: -1.00 -73.72 309.26 -0.02 -73.73 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: 0.22 Total: 5.74 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: 4.54 Total: 1.40 kcal Atomic # 7 Polarization: -85.39 SS G_CDS: -6.67 Total: -92.06 kcal Atomic # 8 Polarization: -33.75 SS G_CDS: -0.13 Total: -33.88 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -73.72 -0.02 -73.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255174855.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.873 kcal (2) G-P(sol) polarization free energy of solvation -73.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds