Wall clock time and date at job start Mon Mar 30 2020 01:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46841 * 2 1 4 4 H 1.09000 * 109.47748 * 55.00066 * 3 2 1 5 5 C 1.50704 * 109.47158 * 175.00273 * 3 2 1 6 6 H 1.08005 * 120.00104 * 119.99433 * 5 3 2 7 7 C 1.37876 * 119.99885 * 300.00141 * 5 3 2 8 8 N 1.31512 * 119.99757 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 120.00004 * 0.02562 * 7 5 3 10 10 H 1.48490 * 109.47462 * 89.99613 * 9 7 5 11 11 H 1.48499 * 109.46897 * 210.00367 * 9 7 5 12 12 H 1.48504 * 109.46909 * 329.99591 * 9 7 5 13 13 N 1.46905 * 109.47491 * 295.00041 * 3 2 1 14 14 C 1.46843 * 111.00092 * 298.95972 * 13 3 2 15 15 C 1.53040 * 109.62779 * 173.80798 * 14 13 3 16 16 C 1.53213 * 109.20929 * 59.58714 * 15 14 13 17 17 C 1.52603 * 109.18587 * 303.13236 * 16 15 14 18 18 C 1.53661 * 110.22140 * 178.57890 * 17 16 15 19 19 N 1.47226 * 103.58655 * 118.81889 * 18 17 16 20 20 C 1.34072 * 108.85327 * 0.02562 * 19 18 17 21 21 O 1.21512 * 123.09025 * 179.97438 * 20 19 18 22 22 O 1.33933 * 113.81915 * 359.97438 * 20 19 18 23 23 C 1.46944 * 111.00039 * 174.80298 * 13 3 2 24 24 H 1.09004 * 109.46933 * 299.99901 * 1 2 3 25 25 H 1.09001 * 109.47297 * 59.99765 * 1 2 3 26 26 H 1.09001 * 109.46999 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46537 * 240.00331 * 2 1 3 28 28 H 1.08996 * 109.46904 * 120.00008 * 2 1 3 29 29 H 0.97009 * 119.99829 * 180.02562 * 8 7 5 30 30 H 1.09004 * 109.44465 * 53.75669 * 14 13 3 31 31 H 1.08998 * 109.43974 * 293.85713 * 14 13 3 32 32 H 1.09001 * 109.51537 * 299.66607 * 15 14 13 33 33 H 1.08999 * 109.55986 * 179.53513 * 15 14 13 34 34 H 1.09000 * 109.52105 * 183.21903 * 16 15 14 35 35 H 1.09009 * 109.56462 * 63.07402 * 16 15 14 36 36 H 1.08991 * 110.59923 * 0.29507 * 18 17 16 37 37 H 1.08997 * 110.60091 * 237.34424 * 18 17 16 38 38 H 0.97001 * 125.57364 * 179.97438 * 19 18 17 39 39 H 1.08995 * 109.45560 * 64.91330 * 23 13 3 40 40 H 1.08997 * 109.45251 * 304.96516 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1472 1.8889 -0.6525 7 6 4.1434 0.8785 1.2279 8 7 5.4541 0.8797 1.3356 9 14 3.0965 0.1088 2.5699 10 1 2.8757 -1.3272 2.2632 11 1 3.7938 0.2348 3.8750 12 1 1.7878 0.8072 2.6386 13 7 1.6514 2.0994 -1.2552 14 6 2.2403 1.4135 -2.4124 15 6 1.6946 2.0249 -3.7049 16 6 2.0494 3.5148 -3.7468 17 6 1.4909 4.1986 -2.5021 18 6 1.8641 5.6892 -2.5023 19 7 0.5600 6.3721 -2.5225 20 6 -0.4124 5.4491 -2.5319 21 8 -1.5943 5.7308 -2.5483 22 8 0.0387 4.1881 -2.5214 23 6 2.0166 3.5226 -1.2399 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 5.8772 0.4812 2.1122 30 1 1.9844 0.3546 -2.3755 31 1 3.3242 1.5254 -2.3874 32 1 0.6113 1.9076 -3.7341 33 1 2.1387 1.5206 -4.5631 34 1 1.6142 3.9679 -4.6375 35 1 3.1330 3.6314 -3.7712 36 1 2.4419 5.9397 -3.3918 37 1 2.4176 5.9461 -1.5992 38 1 0.4261 7.3329 -2.5274 39 1 3.1017 3.6185 -1.2018 40 1 1.5791 4.0002 -0.3632 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255175619.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:25 Heat of formation + Delta-G solvation = -64.719611 kcal Electronic energy + Delta-G solvation = -22219.007559 eV Core-core repulsion = 19034.071516 eV Total energy + Delta-G solvation = -3184.936044 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.64045 -38.54931 -36.84387 -34.61011 -34.43078 -32.11006 -31.21038 -30.48732 -27.20963 -25.68547 -24.04230 -22.46018 -22.27261 -22.18976 -20.38682 -19.14168 -17.39174 -16.73124 -16.46695 -16.22601 -15.78244 -14.76109 -14.63773 -14.41462 -13.93900 -13.74951 -13.61029 -13.22175 -13.15818 -12.72806 -12.39120 -12.16688 -11.89476 -11.79942 -11.58571 -11.23354 -11.05214 -10.80851 -10.59285 -10.50738 -10.31193 -10.16564 -9.87417 -9.60835 -9.58310 -9.37516 -9.24068 -8.63825 -7.24805 -6.20440 -4.21896 2.85043 2.90041 3.21726 3.33585 3.35682 3.63991 4.11764 4.31301 4.54666 4.67774 5.00181 5.12409 5.20039 5.22690 5.25333 5.49605 5.68554 5.75154 5.93455 5.97237 6.03789 6.07761 6.15677 6.20595 6.26163 6.28308 6.49776 6.68502 6.76020 6.78238 6.79468 6.89101 7.08624 7.18430 7.46355 7.47299 7.96572 8.04730 8.21407 8.34508 8.79316 9.43523 10.91852 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.023714 B = 0.006309 C = 0.006122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.465760 B = 4437.203697 C = 4572.736072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.122 4.122 3 C 0.182 3.818 4 H 0.039 0.961 5 C -0.548 4.548 6 H 0.076 0.924 7 C 0.076 3.924 8 N -0.896 5.896 9 Si 0.886 3.114 10 H -0.278 1.278 11 H -0.298 1.298 12 H -0.263 1.263 13 N -0.517 5.517 14 C 0.054 3.946 15 C -0.116 4.116 16 C -0.117 4.117 17 C 0.102 3.898 18 C 0.073 3.927 19 N -0.741 5.741 20 C 0.640 3.360 21 O -0.537 6.537 22 O -0.295 6.295 23 C 0.065 3.935 24 H 0.041 0.959 25 H 0.064 0.936 26 H 0.033 0.967 27 H 0.060 0.940 28 H 0.047 0.953 29 H 0.264 0.736 30 H 0.075 0.925 31 H 0.046 0.954 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.430 0.570 39 H 0.069 0.931 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.148 6.808 -8.564 11.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.159 4.159 3 C 0.074 3.926 4 H 0.057 0.943 5 C -0.587 4.587 6 H 0.094 0.906 7 C -0.127 4.127 8 N -0.534 5.534 9 Si 0.716 3.284 10 H -0.205 1.205 11 H -0.226 1.226 12 H -0.188 1.188 13 N -0.241 5.241 14 C -0.074 4.074 15 C -0.154 4.154 16 C -0.154 4.154 17 C 0.064 3.936 18 C -0.053 4.053 19 N -0.413 5.413 20 C 0.394 3.606 21 O -0.423 6.423 22 O -0.204 6.204 23 C -0.064 4.064 24 H 0.060 0.940 25 H 0.083 0.917 26 H 0.052 0.948 27 H 0.079 0.921 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.064 0.936 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.103 0.897 36 H 0.110 0.890 37 H 0.114 0.886 38 H 0.272 0.728 39 H 0.087 0.913 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.221 6.429 -8.496 11.865 hybrid contribution 0.695 0.089 0.962 1.190 sum -4.526 6.518 -7.534 10.942 Atomic orbital electron populations 1.21748 0.97180 0.99396 1.01915 1.21946 0.94220 0.99065 1.00692 1.19731 0.94503 0.90700 0.87618 0.94283 1.21593 0.90508 1.39460 1.07124 0.90560 1.24961 0.94713 0.95183 0.97848 1.69907 1.08827 1.44858 1.29772 0.86868 0.80755 0.79950 0.80807 1.20474 1.22599 1.18797 1.62311 1.57968 1.00078 1.03705 1.22030 0.97664 0.98602 0.89093 1.21613 1.02194 0.93534 0.98046 1.21811 1.01078 0.97582 0.94979 1.23028 0.77224 0.94019 0.99335 1.22904 0.86512 0.91329 1.04513 1.46025 1.06367 1.09638 1.79309 1.18821 0.85752 0.80483 0.75582 1.91029 1.14360 1.80787 1.56139 1.87432 1.23097 1.24202 1.85717 1.22086 0.99425 0.91229 0.93677 0.93954 0.91707 0.94796 0.92102 0.93501 0.92592 0.90652 0.93624 0.90987 0.91731 0.91455 0.89692 0.88997 0.88583 0.72792 0.91266 0.90697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 9.80 37.16 0.36 -2.31 16 2 C -0.12 -2.55 4.73 -26.73 -0.13 -2.68 16 3 C 0.18 4.01 1.34 -68.86 -0.09 3.91 16 4 H 0.04 0.93 7.15 -51.93 -0.37 0.55 16 5 C -0.55 -13.93 7.76 -34.44 -0.27 -14.20 16 6 H 0.08 2.07 6.08 -52.48 -0.32 1.75 16 7 C 0.08 2.06 5.45 -17.82 -0.10 1.96 16 8 N -0.90 -25.91 13.96 55.43 0.77 -25.13 16 9 Si 0.89 21.22 24.41 -169.99 -4.15 17.07 16 10 H -0.28 -6.55 6.83 56.52 0.39 -6.17 16 11 H -0.30 -7.23 7.11 56.52 0.40 -6.82 16 12 H -0.26 -6.11 6.53 56.52 0.37 -5.74 16 13 N -0.52 -9.78 4.08 -228.32 -0.93 -10.71 16 14 C 0.05 0.94 4.79 -3.83 -0.02 0.92 16 15 C -0.12 -1.61 6.00 -26.60 -0.16 -1.77 16 16 C -0.12 -1.42 4.85 -26.82 -0.13 -1.55 16 17 C 0.10 1.40 0.96 -90.72 -0.09 1.31 16 18 C 0.07 0.74 7.34 -3.30 -0.02 0.71 16 19 N -0.74 -8.37 6.41 -64.81 -0.42 -8.79 16 20 C 0.64 10.35 9.16 53.74 0.49 10.85 16 21 O -0.54 -10.57 18.04 -19.11 -0.34 -10.92 16 22 O -0.30 -4.95 10.17 -38.24 -0.39 -5.34 16 23 C 0.06 1.09 3.96 -4.04 -0.02 1.07 16 24 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.06 1.18 7.75 -51.93 -0.40 0.78 16 26 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 1.24 6.05 -51.93 -0.31 0.93 16 28 H 0.05 1.05 3.21 -51.93 -0.17 0.89 16 29 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 30 H 0.08 1.34 5.92 -51.93 -0.31 1.03 16 31 H 0.05 0.87 6.62 -51.93 -0.34 0.52 16 32 H 0.07 1.08 7.98 -51.93 -0.41 0.67 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.92 8.14 -51.92 -0.42 0.50 16 36 H 0.09 0.69 7.71 -51.93 -0.40 0.29 16 37 H 0.10 0.88 7.71 -51.93 -0.40 0.48 16 38 H 0.43 3.68 8.96 -40.82 -0.37 3.31 16 39 H 0.07 1.21 6.95 -51.93 -0.36 0.85 16 40 H 0.07 1.31 8.09 -51.93 -0.42 0.89 16 LS Contribution 302.87 15.07 4.56 4.56 Total: -1.00 -31.33 302.87 -6.94 -38.27 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -5.88 Total: 2.77 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: -0.16 Total: -1.78 kcal Atomic # 7 Polarization: -44.06 SS G_CDS: -0.57 Total: -44.63 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: -0.73 Total: -16.26 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.15 Total: 17.07 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.33 -6.94 -38.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255175619.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.454 kcal (2) G-P(sol) polarization free energy of solvation -31.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds