Wall clock time and date at job start Mon Mar 30 2020 01:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46841 * 2 1 4 4 H 1.09000 * 109.47748 * 55.00066 * 3 2 1 5 5 C 1.50704 * 109.47158 * 175.00273 * 3 2 1 6 6 H 1.08005 * 120.00104 * 119.99433 * 5 3 2 7 7 C 1.37876 * 119.99885 * 300.00141 * 5 3 2 8 8 N 1.31512 * 119.99757 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 120.00004 * 0.02562 * 7 5 3 10 10 H 1.48490 * 109.47462 * 89.99613 * 9 7 5 11 11 H 1.48499 * 109.46897 * 210.00367 * 9 7 5 12 12 H 1.48504 * 109.46909 * 329.99591 * 9 7 5 13 13 N 1.46905 * 109.47491 * 295.00041 * 3 2 1 14 14 C 1.46843 * 111.00092 * 298.95972 * 13 3 2 15 15 C 1.53040 * 109.62779 * 173.80798 * 14 13 3 16 16 C 1.53213 * 109.20929 * 59.58714 * 15 14 13 17 17 C 1.52603 * 109.18587 * 303.13236 * 16 15 14 18 18 C 1.53661 * 110.22140 * 178.57890 * 17 16 15 19 19 N 1.47226 * 103.58655 * 118.81889 * 18 17 16 20 20 C 1.34072 * 108.85327 * 0.02562 * 19 18 17 21 21 O 1.21512 * 123.09025 * 179.97438 * 20 19 18 22 22 O 1.33933 * 113.81915 * 359.97438 * 20 19 18 23 23 C 1.46944 * 111.00039 * 174.80298 * 13 3 2 24 24 H 1.09004 * 109.46933 * 299.99901 * 1 2 3 25 25 H 1.09001 * 109.47297 * 59.99765 * 1 2 3 26 26 H 1.09001 * 109.46999 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46537 * 240.00331 * 2 1 3 28 28 H 1.08996 * 109.46904 * 120.00008 * 2 1 3 29 29 H 0.97009 * 119.99829 * 180.02562 * 8 7 5 30 30 H 1.09004 * 109.44465 * 53.75669 * 14 13 3 31 31 H 1.08998 * 109.43974 * 293.85713 * 14 13 3 32 32 H 1.09001 * 109.51537 * 299.66607 * 15 14 13 33 33 H 1.08999 * 109.55986 * 179.53513 * 15 14 13 34 34 H 1.09000 * 109.52105 * 183.21903 * 16 15 14 35 35 H 1.09009 * 109.56462 * 63.07402 * 16 15 14 36 36 H 1.08991 * 110.59923 * 0.29507 * 18 17 16 37 37 H 1.08997 * 110.60091 * 237.34424 * 18 17 16 38 38 H 0.97001 * 125.57364 * 179.97438 * 19 18 17 39 39 H 1.08995 * 109.45560 * 64.91330 * 23 13 3 40 40 H 1.08997 * 109.45251 * 304.96516 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1472 1.8889 -0.6525 7 6 4.1434 0.8785 1.2279 8 7 5.4541 0.8797 1.3356 9 14 3.0965 0.1088 2.5699 10 1 2.8757 -1.3272 2.2632 11 1 3.7938 0.2348 3.8750 12 1 1.7878 0.8072 2.6386 13 7 1.6514 2.0994 -1.2552 14 6 2.2403 1.4135 -2.4124 15 6 1.6946 2.0249 -3.7049 16 6 2.0494 3.5148 -3.7468 17 6 1.4909 4.1986 -2.5021 18 6 1.8641 5.6892 -2.5023 19 7 0.5600 6.3721 -2.5225 20 6 -0.4124 5.4491 -2.5319 21 8 -1.5943 5.7308 -2.5483 22 8 0.0387 4.1881 -2.5214 23 6 2.0166 3.5226 -1.2399 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 5.8772 0.4812 2.1122 30 1 1.9844 0.3546 -2.3755 31 1 3.3242 1.5254 -2.3874 32 1 0.6113 1.9076 -3.7341 33 1 2.1387 1.5206 -4.5631 34 1 1.6142 3.9679 -4.6375 35 1 3.1330 3.6314 -3.7712 36 1 2.4419 5.9397 -3.3918 37 1 2.4176 5.9461 -1.5992 38 1 0.4261 7.3329 -2.5274 39 1 3.1017 3.6185 -1.2018 40 1 1.5791 4.0002 -0.3632 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255175619.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:24 Heat of formation + Delta-G solvation = -89.546379 kcal Electronic energy + Delta-G solvation = -22220.084129 eV Core-core repulsion = 19034.071516 eV Total energy + Delta-G solvation = -3186.012613 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.79030 -39.96359 -38.24890 -35.93978 -35.63493 -34.08153 -32.60358 -31.71961 -28.99279 -26.75212 -25.58588 -23.94518 -23.57742 -23.40492 -21.69454 -20.76932 -18.79701 -18.32792 -17.69745 -17.47984 -17.31852 -16.21659 -15.99956 -15.75263 -15.29548 -15.04038 -15.00558 -14.63896 -14.37659 -14.29701 -13.88375 -13.54081 -13.39530 -13.29947 -12.91831 -12.80616 -12.67505 -12.34092 -12.02823 -11.88272 -11.77652 -11.64668 -11.43025 -11.32613 -11.07026 -11.01992 -10.67259 -10.30354 -8.85297 -8.30930 -6.33502 1.29339 1.36317 1.44685 1.66879 1.82175 2.30701 2.60169 3.01125 3.07032 3.38082 3.57292 3.76190 4.10113 4.23650 4.31250 4.36386 4.42646 4.52067 4.60488 4.63950 4.65257 4.83029 4.84527 4.87969 4.97258 5.03016 5.04903 5.10929 5.25989 5.30211 5.43451 5.44873 5.54730 5.62601 5.86359 6.16324 6.32494 6.38749 6.53445 6.74134 7.10750 7.35281 8.84226 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.023714 B = 0.006309 C = 0.006122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.465760 B = 4437.203697 C = 4572.736072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.123 4.123 3 C 0.186 3.814 4 H 0.024 0.976 5 C -0.533 4.533 6 H 0.051 0.949 7 C 0.024 3.976 8 N -0.941 5.941 9 Si 0.936 3.064 10 H -0.270 1.270 11 H -0.303 1.303 12 H -0.253 1.253 13 N -0.520 5.520 14 C 0.057 3.943 15 C -0.109 4.109 16 C -0.114 4.114 17 C 0.100 3.900 18 C 0.079 3.921 19 N -0.717 5.717 20 C 0.636 3.364 21 O -0.582 6.582 22 O -0.318 6.318 23 C 0.064 3.936 24 H 0.039 0.961 25 H 0.064 0.936 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.033 0.967 29 H 0.264 0.736 30 H 0.067 0.933 31 H 0.024 0.976 32 H 0.061 0.939 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.103 0.897 36 H 0.133 0.867 37 H 0.109 0.891 38 H 0.445 0.555 39 H 0.060 0.940 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.760 7.519 -9.850 13.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.160 4.160 3 C 0.077 3.923 4 H 0.042 0.958 5 C -0.572 4.572 6 H 0.069 0.931 7 C -0.174 4.174 8 N -0.581 5.581 9 Si 0.764 3.236 10 H -0.197 1.197 11 H -0.231 1.231 12 H -0.177 1.177 13 N -0.243 5.243 14 C -0.071 4.071 15 C -0.147 4.147 16 C -0.151 4.151 17 C 0.063 3.937 18 C -0.046 4.046 19 N -0.390 5.390 20 C 0.389 3.611 21 O -0.471 6.471 22 O -0.228 6.228 23 C -0.065 4.065 24 H 0.058 0.942 25 H 0.083 0.917 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.052 0.948 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.043 0.957 32 H 0.080 0.920 33 H 0.107 0.893 34 H 0.110 0.890 35 H 0.121 0.879 36 H 0.151 0.849 37 H 0.127 0.873 38 H 0.290 0.710 39 H 0.078 0.922 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.821 7.168 -9.799 13.463 hybrid contribution 0.944 -0.113 1.314 1.622 sum -4.876 7.054 -8.485 12.064 Atomic orbital electron populations 1.21645 0.94927 1.00915 1.01784 1.21888 0.96205 0.97797 1.00128 1.19569 0.91951 0.91797 0.88949 0.95842 1.21836 0.92283 1.37348 1.05684 0.93077 1.25644 0.95478 0.96207 1.00097 1.70025 1.10428 1.46952 1.30706 0.86043 0.79672 0.79657 0.78181 1.19660 1.23077 1.17726 1.62315 1.57940 1.01204 1.02849 1.22040 0.96390 0.98480 0.90227 1.21553 1.01418 0.95067 0.96662 1.21868 1.02254 0.96029 0.94976 1.23104 0.75997 0.96383 0.98251 1.23085 0.85921 0.88364 1.07207 1.45906 1.05821 1.09893 1.77409 1.18961 0.85793 0.80841 0.75532 1.90989 1.16409 1.81394 1.58355 1.87395 1.24700 1.24976 1.85697 1.22100 0.98895 0.90150 0.95358 0.94220 0.91655 0.92467 0.91862 0.94839 0.92729 0.91494 0.95733 0.92026 0.89297 0.89021 0.87879 0.84947 0.87294 0.71012 0.92222 0.91963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.76 9.80 71.98 0.71 -4.05 16 2 C -0.12 -5.04 4.73 30.60 0.14 -4.90 16 3 C 0.19 8.19 1.34 44.17 0.06 8.24 16 4 H 0.02 1.12 7.15 -2.39 -0.02 1.10 16 5 C -0.53 -27.54 7.76 25.60 0.20 -27.34 16 6 H 0.05 2.86 6.08 -2.91 -0.02 2.84 16 7 C 0.02 1.34 5.45 84.65 0.46 1.80 16 8 N -0.94 -55.68 13.96 21.45 0.30 -55.38 16 9 Si 0.94 43.97 24.41 68.60 1.67 45.65 16 10 H -0.27 -12.27 6.83 99.48 0.68 -11.59 16 11 H -0.30 -14.33 7.11 99.48 0.71 -13.63 16 12 H -0.25 -11.34 6.53 99.48 0.65 -10.69 16 13 N -0.52 -19.48 4.08 -876.27 -3.57 -23.05 16 14 C 0.06 1.92 4.79 86.33 0.41 2.33 16 15 C -0.11 -2.79 6.00 30.68 0.18 -2.61 16 16 C -0.11 -2.39 4.85 30.53 0.15 -2.25 16 17 C 0.10 2.52 0.96 -10.86 -0.01 2.51 16 18 C 0.08 1.31 7.34 86.46 0.63 1.94 16 19 N -0.72 -14.17 6.41 -590.51 -3.78 -17.95 16 20 C 0.64 19.59 9.16 129.90 1.19 20.78 16 21 O -0.58 -22.64 18.04 19.64 0.35 -22.29 16 22 O -0.32 -10.21 10.17 -48.82 -0.50 -10.70 16 23 C 0.06 2.10 3.96 86.14 0.34 2.44 16 24 H 0.04 1.39 8.14 -2.38 -0.02 1.38 16 25 H 0.06 2.28 7.75 -2.39 -0.02 2.26 16 26 H 0.06 1.73 8.14 -2.39 -0.02 1.72 16 27 H 0.06 2.54 6.05 -2.39 -0.01 2.53 16 28 H 0.03 1.47 3.21 -2.39 -0.01 1.46 16 29 H 0.26 14.85 8.31 -92.70 -0.77 14.07 16 30 H 0.07 2.34 5.92 -2.39 -0.01 2.33 16 31 H 0.02 0.93 6.62 -2.39 -0.02 0.92 16 32 H 0.06 1.73 7.98 -2.39 -0.02 1.71 16 33 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.10 1.85 8.14 -2.38 -0.02 1.83 16 36 H 0.13 1.27 7.71 -2.39 -0.02 1.26 16 37 H 0.11 1.62 7.71 -2.39 -0.02 1.61 16 38 H 0.45 6.25 8.96 -92.71 -0.83 5.42 16 39 H 0.06 2.08 6.95 -2.39 -0.02 2.06 16 40 H 0.06 2.17 8.09 -2.39 -0.02 2.15 16 Total: -1.00 -69.80 302.87 -0.92 -70.72 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: 0.14 Total: 14.10 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: 4.47 Total: -1.10 kcal Atomic # 7 Polarization: -89.32 SS G_CDS: -7.06 Total: -96.38 kcal Atomic # 8 Polarization: -32.85 SS G_CDS: -0.14 Total: -32.99 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 1.67 Total: 45.65 kcal Total: -69.80 -0.92 -70.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255175619.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.825 kcal (2) G-P(sol) polarization free energy of solvation -69.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds