Wall clock time and date at job start Mon Mar 30 2020 01:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47035 * 2 1 4 4 H 1.09004 * 109.47045 * 304.99959 * 3 2 1 5 5 C 1.50698 * 109.47208 * 184.99671 * 3 2 1 6 6 H 1.07998 * 120.00210 * 239.99587 * 5 3 2 7 7 C 1.37879 * 120.00000 * 59.99771 * 5 3 2 8 8 N 1.31516 * 120.00179 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 120.00215 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.46882 * 59.99910 * 9 7 5 11 11 H 1.48495 * 109.47106 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47016 * 300.00376 * 9 7 5 13 13 N 1.46902 * 109.47145 * 64.99693 * 3 2 1 14 14 C 1.46842 * 111.00087 * 65.85660 * 13 3 2 15 15 C 1.53036 * 109.62560 * 186.19304 * 14 13 3 16 16 C 1.53221 * 109.21187 * 300.40856 * 15 14 13 17 17 C 1.52607 * 109.18803 * 56.85864 * 16 15 14 18 18 C 1.53652 * 110.21707 * 181.43882 * 17 16 15 19 19 N 1.47219 * 103.59486 * 241.16820 * 18 17 16 20 20 C 1.34087 * 108.84883 * 359.97438 * 19 18 17 21 21 O 1.21511 * 123.08695 * 179.97438 * 20 19 18 22 22 O 1.33922 * 113.81651 * 0.02562 * 20 19 18 23 23 C 1.46946 * 110.99602 * 190.00102 * 13 3 2 24 24 H 1.08995 * 109.47242 * 300.00025 * 1 2 3 25 25 H 1.09000 * 109.46646 * 60.00349 * 1 2 3 26 26 H 1.09006 * 109.47046 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47072 * 239.99492 * 2 1 3 28 28 H 1.09000 * 109.46646 * 119.99651 * 2 1 3 29 29 H 0.96994 * 120.00660 * 179.97438 * 8 7 5 30 30 H 1.08996 * 109.45056 * 306.24148 * 14 13 3 31 31 H 1.09005 * 109.44903 * 66.14452 * 14 13 3 32 32 H 1.08995 * 109.51416 * 60.32819 * 15 14 13 33 33 H 1.09005 * 109.51507 * 180.43518 * 15 14 13 34 34 H 1.09004 * 109.51719 * 176.76600 * 16 15 14 35 35 H 1.08992 * 109.51741 * 296.88743 * 16 15 14 36 36 H 1.08997 * 110.60087 * 359.69381 * 18 17 16 37 37 H 1.09001 * 110.59983 * 122.48891 * 18 17 16 38 38 H 0.97004 * 125.58075 * 179.97438 * 19 18 17 39 39 H 1.09003 * 109.45643 * 295.08594 * 23 13 3 40 40 H 1.08998 * 109.45616 * 55.02790 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1237 6 1 4.1472 1.8890 0.6523 7 6 4.1434 0.8784 -1.2278 8 7 3.4063 0.3374 -2.1732 9 14 6.0051 0.8800 -1.3809 10 1 6.5967 0.1453 -0.2340 11 1 6.3980 0.2156 -2.6495 12 1 6.5006 2.2799 -1.3806 13 7 1.6513 2.0993 1.2552 14 6 2.3303 1.4846 2.4030 15 6 1.7896 2.0858 3.7023 16 6 2.0374 3.5978 3.6997 17 6 1.3860 4.2106 2.4632 18 6 1.6509 5.7235 2.4181 19 7 0.3028 6.3126 2.4734 20 6 -0.5999 5.3233 2.5390 21 8 -1.7975 5.5208 2.5953 22 8 -0.0601 4.0977 2.5377 23 6 1.9125 3.5441 1.1962 24 1 -0.3633 0.5138 0.8899 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8294 -0.0605 -2.9501 30 1 2.1503 0.4096 2.3981 31 1 3.4017 1.6728 2.3343 32 1 0.7195 1.8923 3.7754 33 1 2.3002 1.6338 4.5528 34 1 1.6032 4.0395 4.5967 35 1 3.1099 3.7910 3.6810 36 1 2.2413 6.0353 3.2796 37 1 2.1538 5.9973 1.4906 38 1 0.1006 7.2613 2.4640 39 1 2.9858 3.7161 1.1148 40 1 1.4101 3.9687 0.3271 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255175621.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:31 Heat of formation + Delta-G solvation = -72.632316 kcal Electronic energy + Delta-G solvation = -22151.493456 eV Core-core repulsion = 18966.214291 eV Total energy + Delta-G solvation = -3185.279164 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.60136 -38.41154 -36.71700 -34.57154 -34.28662 -31.96058 -30.87301 -30.37185 -26.69405 -25.63297 -24.07750 -22.37268 -22.33511 -22.10650 -20.18524 -18.94293 -17.32325 -16.52208 -16.32093 -16.18212 -15.45707 -14.72019 -14.54729 -14.39029 -13.86760 -13.66372 -13.51731 -13.16252 -12.92534 -12.74968 -12.12021 -12.00484 -11.64302 -11.58979 -11.23107 -11.12511 -10.93967 -10.66926 -10.52392 -10.45506 -10.32700 -10.11487 -9.82967 -9.65939 -9.41918 -9.29364 -9.09577 -8.41547 -7.18401 -6.04551 -4.19558 2.87923 2.93396 3.21430 3.28248 3.29282 3.66917 4.15572 4.32651 4.58631 4.74793 5.09246 5.19288 5.23938 5.25011 5.27957 5.52186 5.72730 5.78184 6.05025 6.10134 6.14163 6.26886 6.28290 6.41139 6.51227 6.66621 6.74122 6.80187 6.82286 7.12656 7.21343 7.32184 7.50022 7.56526 7.72640 7.90917 8.08347 8.22376 8.24810 8.41237 8.90202 9.48452 10.94352 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.022503 B = 0.006231 C = 0.005784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.961805 B = 4492.861961 C = 4839.790754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.109 4.109 3 C 0.216 3.784 4 H 0.038 0.962 5 C -0.549 4.549 6 H 0.056 0.944 7 C 0.070 3.930 8 N -0.883 5.883 9 Si 0.887 3.113 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.279 1.279 13 N -0.525 5.525 14 C 0.058 3.942 15 C -0.117 4.117 16 C -0.116 4.116 17 C 0.102 3.898 18 C 0.073 3.927 19 N -0.741 5.741 20 C 0.640 3.360 21 O -0.536 6.536 22 O -0.294 6.294 23 C 0.066 3.934 24 H 0.050 0.950 25 H 0.038 0.962 26 H 0.024 0.976 27 H 0.092 0.908 28 H 0.033 0.967 29 H 0.263 0.737 30 H 0.075 0.925 31 H 0.039 0.961 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.430 0.570 39 H 0.061 0.939 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.487 8.199 9.420 12.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.148 4.148 3 C 0.110 3.890 4 H 0.056 0.944 5 C -0.588 4.588 6 H 0.074 0.926 7 C -0.133 4.133 8 N -0.520 5.520 9 Si 0.715 3.285 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.204 1.204 13 N -0.249 5.249 14 C -0.070 4.070 15 C -0.155 4.155 16 C -0.154 4.154 17 C 0.064 3.936 18 C -0.053 4.053 19 N -0.414 5.414 20 C 0.394 3.606 21 O -0.423 6.423 22 O -0.203 6.203 23 C -0.063 4.063 24 H 0.069 0.931 25 H 0.057 0.943 26 H 0.044 0.956 27 H 0.110 0.890 28 H 0.052 0.948 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.057 0.943 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.101 0.899 36 H 0.109 0.891 37 H 0.113 0.887 38 H 0.272 0.728 39 H 0.079 0.921 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.703 7.678 9.321 12.097 hybrid contribution 2.075 0.655 -0.355 2.205 sum 1.372 8.333 8.967 12.318 Atomic orbital electron populations 1.21716 0.98688 0.98443 1.00822 1.21587 0.92394 0.98891 1.01886 1.19287 0.92995 0.91403 0.85355 0.94389 1.21687 0.92749 1.38753 1.05573 0.92553 1.24909 0.97765 0.94954 0.95659 1.69862 1.34950 1.37871 1.09350 0.86750 0.86175 0.78153 0.77447 1.20315 1.21229 1.20428 1.62399 1.57100 1.00132 1.05220 1.21967 0.96405 0.99384 0.89233 1.21638 1.02421 0.93267 0.98213 1.21798 1.00385 0.98035 0.95149 1.23035 0.77760 0.93473 0.99377 1.22891 0.85424 0.92615 1.04338 1.46021 1.06683 1.09485 1.79196 1.18830 0.85893 0.80319 0.75591 1.91028 1.12057 1.83125 1.56048 1.87443 1.21869 1.25443 1.85503 1.22052 0.99141 0.91754 0.93369 0.93084 0.94299 0.95637 0.88997 0.94842 0.92729 0.90683 0.94269 0.90975 0.91937 0.91552 0.89912 0.89149 0.88711 0.72834 0.92112 0.90780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 9.80 37.16 0.36 -2.53 16 2 C -0.11 -2.52 5.17 -26.73 -0.14 -2.66 16 3 C 0.22 5.04 1.71 -68.87 -0.12 4.92 16 4 H 0.04 1.00 8.00 -51.93 -0.42 0.59 16 5 C -0.55 -13.65 7.22 -34.44 -0.25 -13.90 16 6 H 0.06 1.37 5.84 -52.49 -0.31 1.07 16 7 C 0.07 1.82 5.29 -17.82 -0.09 1.72 16 8 N -0.88 -23.94 11.29 55.43 0.63 -23.31 16 9 Si 0.89 20.05 29.54 -169.99 -5.02 15.02 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 11 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 12 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 13 N -0.52 -10.36 4.04 -228.32 -0.92 -11.28 16 14 C 0.06 1.04 4.76 -3.84 -0.02 1.02 16 15 C -0.12 -1.69 6.00 -26.60 -0.16 -1.85 16 16 C -0.12 -1.44 4.85 -26.82 -0.13 -1.57 16 17 C 0.10 1.42 0.96 -90.72 -0.09 1.34 16 18 C 0.07 0.74 7.34 -3.31 -0.02 0.72 16 19 N -0.74 -8.57 6.41 -64.81 -0.42 -8.98 16 20 C 0.64 10.63 9.16 53.75 0.49 11.12 16 21 O -0.54 -10.80 18.04 -19.11 -0.34 -11.14 16 22 O -0.29 -5.10 10.18 -38.21 -0.39 -5.49 16 23 C 0.07 1.13 4.02 -4.04 -0.02 1.11 16 24 H 0.05 1.05 7.75 -51.93 -0.40 0.65 16 25 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.09 2.38 5.95 -51.93 -0.31 2.07 16 28 H 0.03 0.75 6.22 -51.93 -0.32 0.43 16 29 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 30 H 0.07 1.42 6.11 -51.93 -0.32 1.11 16 31 H 0.04 0.73 6.38 -51.93 -0.33 0.40 16 32 H 0.07 1.14 7.98 -51.93 -0.41 0.73 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.09 0.68 7.71 -51.93 -0.40 0.28 16 37 H 0.09 0.87 7.71 -51.93 -0.40 0.47 16 38 H 0.43 3.76 8.96 -40.82 -0.37 3.40 16 39 H 0.06 1.04 7.27 -51.93 -0.38 0.66 16 40 H 0.07 1.34 8.03 -51.93 -0.42 0.93 16 LS Contribution 310.03 15.07 4.67 4.67 Total: -1.00 -29.97 310.03 -8.00 -37.97 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -6.03 Total: 3.08 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: -0.18 Total: -0.54 kcal Atomic # 7 Polarization: -42.86 SS G_CDS: -0.71 Total: -43.58 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: -0.73 Total: -16.63 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.97 -8.00 -37.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255175621.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.657 kcal (2) G-P(sol) polarization free energy of solvation -29.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds