Wall clock time and date at job start Mon Mar 30 2020 01:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47035 * 2 1 4 4 H 1.09004 * 109.47045 * 304.99959 * 3 2 1 5 5 C 1.50698 * 109.47208 * 184.99671 * 3 2 1 6 6 H 1.07998 * 120.00210 * 239.99587 * 5 3 2 7 7 C 1.37879 * 120.00000 * 59.99771 * 5 3 2 8 8 N 1.31516 * 120.00179 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 120.00215 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.46882 * 59.99910 * 9 7 5 11 11 H 1.48495 * 109.47106 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47016 * 300.00376 * 9 7 5 13 13 N 1.46902 * 109.47145 * 64.99693 * 3 2 1 14 14 C 1.46842 * 111.00087 * 65.85660 * 13 3 2 15 15 C 1.53036 * 109.62560 * 186.19304 * 14 13 3 16 16 C 1.53221 * 109.21187 * 300.40856 * 15 14 13 17 17 C 1.52607 * 109.18803 * 56.85864 * 16 15 14 18 18 C 1.53652 * 110.21707 * 181.43882 * 17 16 15 19 19 N 1.47219 * 103.59486 * 241.16820 * 18 17 16 20 20 C 1.34087 * 108.84883 * 359.97438 * 19 18 17 21 21 O 1.21511 * 123.08695 * 179.97438 * 20 19 18 22 22 O 1.33922 * 113.81651 * 0.02562 * 20 19 18 23 23 C 1.46946 * 110.99602 * 190.00102 * 13 3 2 24 24 H 1.08995 * 109.47242 * 300.00025 * 1 2 3 25 25 H 1.09000 * 109.46646 * 60.00349 * 1 2 3 26 26 H 1.09006 * 109.47046 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47072 * 239.99492 * 2 1 3 28 28 H 1.09000 * 109.46646 * 119.99651 * 2 1 3 29 29 H 0.96994 * 120.00660 * 179.97438 * 8 7 5 30 30 H 1.08996 * 109.45056 * 306.24148 * 14 13 3 31 31 H 1.09005 * 109.44903 * 66.14452 * 14 13 3 32 32 H 1.08995 * 109.51416 * 60.32819 * 15 14 13 33 33 H 1.09005 * 109.51507 * 180.43518 * 15 14 13 34 34 H 1.09004 * 109.51719 * 176.76600 * 16 15 14 35 35 H 1.08992 * 109.51741 * 296.88743 * 16 15 14 36 36 H 1.08997 * 110.60087 * 359.69381 * 18 17 16 37 37 H 1.09001 * 110.59983 * 122.48891 * 18 17 16 38 38 H 0.97004 * 125.58075 * 179.97438 * 19 18 17 39 39 H 1.09003 * 109.45643 * 295.08594 * 23 13 3 40 40 H 1.08998 * 109.45616 * 55.02790 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1237 6 1 4.1472 1.8890 0.6523 7 6 4.1434 0.8784 -1.2278 8 7 3.4063 0.3374 -2.1732 9 14 6.0051 0.8800 -1.3809 10 1 6.5967 0.1453 -0.2340 11 1 6.3980 0.2156 -2.6495 12 1 6.5006 2.2799 -1.3806 13 7 1.6513 2.0993 1.2552 14 6 2.3303 1.4846 2.4030 15 6 1.7896 2.0858 3.7023 16 6 2.0374 3.5978 3.6997 17 6 1.3860 4.2106 2.4632 18 6 1.6509 5.7235 2.4181 19 7 0.3028 6.3126 2.4734 20 6 -0.5999 5.3233 2.5390 21 8 -1.7975 5.5208 2.5953 22 8 -0.0601 4.0977 2.5377 23 6 1.9125 3.5441 1.1962 24 1 -0.3633 0.5138 0.8899 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8294 -0.0605 -2.9501 30 1 2.1503 0.4096 2.3981 31 1 3.4017 1.6728 2.3343 32 1 0.7195 1.8923 3.7754 33 1 2.3002 1.6338 4.5528 34 1 1.6032 4.0395 4.5967 35 1 3.1099 3.7910 3.6810 36 1 2.2413 6.0353 3.2796 37 1 2.1538 5.9973 1.4906 38 1 0.1006 7.2613 2.4640 39 1 2.9858 3.7161 1.1148 40 1 1.4101 3.9687 0.3271 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255175621.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:31 Heat of formation + Delta-G solvation = -94.870223 kcal Electronic energy + Delta-G solvation = -22152.457764 eV Core-core repulsion = 18966.214291 eV Total energy + Delta-G solvation = -3186.243472 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.76998 -39.84049 -38.16906 -35.87689 -35.62108 -33.76473 -32.39606 -31.68252 -28.50949 -26.70893 -25.70892 -23.95527 -23.56815 -23.35674 -21.52417 -20.64476 -18.57868 -18.15121 -17.60413 -17.47089 -17.04514 -16.23679 -15.95490 -15.63405 -15.13387 -15.05538 -14.90519 -14.53669 -14.30129 -14.19600 -13.55666 -13.41027 -13.19833 -13.09760 -12.86079 -12.71783 -12.64503 -12.28592 -12.02802 -11.86996 -11.71246 -11.64870 -11.52610 -11.27742 -11.01629 -10.87306 -10.39605 -10.28746 -8.83995 -7.98316 -6.22915 1.42380 1.44039 1.50445 1.67198 1.83988 2.43276 2.62562 3.09171 3.20702 3.46455 3.60211 3.81353 4.13714 4.26993 4.39253 4.48592 4.59098 4.62352 4.68938 4.73447 4.85961 4.87252 4.90150 4.93095 5.02405 5.06296 5.21383 5.36072 5.40827 5.50052 5.52966 5.65411 5.80914 5.86945 6.08309 6.20611 6.34637 6.41950 6.72291 6.98550 7.11330 7.48943 8.96056 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.022503 B = 0.006231 C = 0.005784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.961805 B = 4492.861961 C = 4839.790754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.105 4.105 3 C 0.223 3.777 4 H -0.003 1.003 5 C -0.549 4.549 6 H 0.063 0.937 7 C 0.020 3.980 8 N -0.915 5.915 9 Si 0.948 3.052 10 H -0.272 1.272 11 H -0.291 1.291 12 H -0.270 1.270 13 N -0.534 5.534 14 C 0.061 3.939 15 C -0.111 4.111 16 C -0.112 4.112 17 C 0.098 3.902 18 C 0.079 3.921 19 N -0.717 5.717 20 C 0.635 3.365 21 O -0.584 6.584 22 O -0.321 6.321 23 C 0.066 3.934 24 H 0.051 0.949 25 H 0.027 0.973 26 H 0.044 0.956 27 H 0.062 0.938 28 H 0.035 0.965 29 H 0.260 0.740 30 H 0.056 0.944 31 H 0.033 0.967 32 H 0.053 0.947 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.109 0.891 36 H 0.135 0.865 37 H 0.110 0.890 38 H 0.445 0.555 39 H 0.064 0.936 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.246 9.731 11.486 15.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.143 4.143 3 C 0.116 3.884 4 H 0.015 0.985 5 C -0.588 4.588 6 H 0.081 0.919 7 C -0.180 4.180 8 N -0.554 5.554 9 Si 0.774 3.226 10 H -0.197 1.197 11 H -0.217 1.217 12 H -0.195 1.195 13 N -0.258 5.258 14 C -0.067 4.067 15 C -0.149 4.149 16 C -0.149 4.149 17 C 0.060 3.940 18 C -0.045 4.045 19 N -0.390 5.390 20 C 0.388 3.612 21 O -0.473 6.473 22 O -0.231 6.231 23 C -0.063 4.063 24 H 0.070 0.930 25 H 0.046 0.954 26 H 0.063 0.937 27 H 0.081 0.919 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.051 0.949 32 H 0.072 0.928 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.128 0.872 36 H 0.153 0.847 37 H 0.128 0.872 38 H 0.290 0.710 39 H 0.082 0.918 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.092 9.249 11.408 14.727 hybrid contribution 1.531 0.154 -1.019 1.845 sum 2.623 9.403 10.390 14.256 Atomic orbital electron populations 1.21567 0.97007 0.99537 1.00258 1.21447 0.93857 0.98610 1.00405 1.19000 0.92167 0.91242 0.86019 0.98461 1.21965 0.93595 1.37868 1.05380 0.91933 1.25660 1.01822 0.94932 0.95571 1.70017 1.36522 1.38984 1.09860 0.85770 0.81289 0.78391 0.77125 1.19730 1.21729 1.19486 1.62299 1.57594 1.01685 1.04196 1.21969 0.95947 0.98593 0.90188 1.21570 1.01313 0.95159 0.96831 1.21863 1.01959 0.96071 0.95004 1.23169 0.76316 0.96087 0.98385 1.23094 0.84752 0.89407 1.07240 1.45901 1.06441 1.09482 1.77220 1.18996 0.85833 0.80830 0.75567 1.90984 1.14220 1.83772 1.58350 1.87408 1.23764 1.26414 1.85480 1.22070 0.99270 0.90170 0.94810 0.92978 0.95362 0.93690 0.91936 0.94649 0.93074 0.92516 0.94927 0.92782 0.89232 0.89197 0.87237 0.84729 0.87179 0.71021 0.91770 0.92847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.36 9.80 71.98 0.71 -4.65 16 2 C -0.10 -4.99 5.17 30.59 0.16 -4.83 16 3 C 0.22 10.72 1.71 44.17 0.08 10.80 16 4 H 0.00 -0.14 8.00 -2.38 -0.02 -0.16 16 5 C -0.55 -27.52 7.22 25.60 0.18 -27.33 16 6 H 0.06 3.00 5.84 -2.91 -0.02 2.98 16 7 C 0.02 1.04 5.29 84.65 0.45 1.49 16 8 N -0.91 -51.03 11.29 21.45 0.24 -50.79 16 9 Si 0.95 41.02 29.54 68.60 2.03 43.04 16 10 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 11 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 12 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 13 N -0.53 -21.20 4.04 -876.29 -3.54 -24.74 16 14 C 0.06 2.13 4.76 86.33 0.41 2.54 16 15 C -0.11 -2.92 6.00 30.68 0.18 -2.74 16 16 C -0.11 -2.32 4.85 30.54 0.15 -2.17 16 17 C 0.10 2.50 0.96 -10.86 -0.01 2.49 16 18 C 0.08 1.29 7.34 86.46 0.63 1.93 16 19 N -0.72 -14.53 6.41 -590.51 -3.78 -18.31 16 20 C 0.63 20.37 9.16 129.90 1.19 21.57 16 21 O -0.58 -23.57 18.04 19.64 0.35 -23.22 16 22 O -0.32 -10.85 10.18 -48.72 -0.50 -11.35 16 23 C 0.07 2.20 4.02 86.14 0.35 2.55 16 24 H 0.05 2.17 7.75 -2.39 -0.02 2.15 16 25 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 27 H 0.06 3.36 5.95 -2.39 -0.01 3.35 16 28 H 0.03 1.63 6.22 -2.39 -0.01 1.62 16 29 H 0.26 13.98 8.31 -92.71 -0.77 13.21 16 30 H 0.06 2.15 6.11 -2.39 -0.01 2.13 16 31 H 0.03 1.17 6.38 -2.38 -0.02 1.16 16 32 H 0.05 1.64 7.98 -2.39 -0.02 1.62 16 33 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 34 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.13 1.17 7.71 -2.39 -0.02 1.15 16 37 H 0.11 1.56 7.71 -2.39 -0.02 1.54 16 38 H 0.44 6.41 8.96 -92.71 -0.83 5.58 16 39 H 0.06 2.10 7.27 -2.39 -0.02 2.08 16 40 H 0.05 1.97 8.03 -2.39 -0.02 1.95 16 Total: -1.00 -68.16 310.03 -0.51 -68.66 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: 0.22 Total: 15.07 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: 4.48 Total: 1.63 kcal Atomic # 7 Polarization: -86.76 SS G_CDS: -7.08 Total: -93.84 kcal Atomic # 8 Polarization: -34.42 SS G_CDS: -0.14 Total: -34.57 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.04 kcal Total: -68.16 -0.51 -68.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255175621.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.206 kcal (2) G-P(sol) polarization free energy of solvation -68.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds