Wall clock time and date at job start Mon Mar 30 2020 01:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.46995 * 2 1 4 4 H 1.09002 * 109.47124 * 177.76457 * 3 2 1 5 5 C 1.50699 * 109.47344 * 297.76219 * 3 2 1 6 6 H 1.08005 * 120.00094 * 119.99694 * 5 3 2 7 7 C 1.37877 * 120.00126 * 300.00579 * 5 3 2 8 8 N 1.31512 * 120.00138 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99987 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47128 * 89.99941 * 9 7 5 11 11 H 1.48495 * 109.47022 * 209.99656 * 9 7 5 12 12 H 1.48498 * 109.46900 * 329.99682 * 9 7 5 13 13 N 1.46898 * 109.47358 * 57.76431 * 3 2 1 14 14 C 1.46855 * 111.00388 * 182.45096 * 13 3 2 15 15 C 1.53136 * 109.46575 * 173.67891 * 14 13 3 16 16 C 1.52559 * 109.31779 * 58.29815 * 15 14 13 17 17 C 1.53620 * 110.32465 * 181.41476 * 16 15 14 18 18 O 1.45844 * 103.79863 * 241.16072 * 17 16 15 19 19 C 1.33846 * 109.44556 * 359.97438 * 18 17 16 20 20 O 1.21511 * 123.08464 * 179.97438 * 19 18 17 21 21 N 1.34163 * 113.82070 * 0.02562 * 19 18 17 22 22 C 1.52558 * 110.45060 * 303.65761 * 16 15 14 23 23 C 1.46857 * 111.00064 * 58.12291 * 13 3 2 24 24 H 1.09005 * 109.47308 * 305.07621 * 1 2 3 25 25 H 1.08996 * 109.47140 * 65.07648 * 1 2 3 26 26 H 1.09004 * 109.47252 * 185.08117 * 1 2 3 27 27 H 1.09003 * 109.46783 * 239.99909 * 2 1 3 28 28 H 1.09005 * 109.47223 * 120.00226 * 2 1 3 29 29 H 0.96998 * 120.00252 * 180.02562 * 8 7 5 30 30 H 1.08996 * 109.47262 * 53.67560 * 14 13 3 31 31 H 1.09008 * 109.46936 * 293.67629 * 14 13 3 32 32 H 1.09003 * 109.49415 * 178.24868 * 15 14 13 33 33 H 1.08997 * 109.50067 * 298.34218 * 15 14 13 34 34 H 1.09000 * 110.56017 * 359.73806 * 17 16 15 35 35 H 1.08996 * 110.55886 * 122.58044 * 17 16 15 36 36 H 0.97005 * 125.66901 * 179.97438 * 21 19 18 37 37 H 1.08996 * 109.49750 * 296.38844 * 22 16 15 38 38 H 1.09001 * 109.52020 * 176.30760 * 22 16 15 39 39 H 1.09003 * 109.47253 * 306.32182 * 23 13 3 40 40 H 1.08995 * 109.47391 * 66.32450 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1292 1.4427 0.0401 5 6 1.5834 2.1367 -1.2572 6 1 0.9594 3.0159 -1.1925 7 6 1.9622 1.6495 -2.4902 8 7 2.7223 0.5791 -2.5691 9 14 1.3957 2.5096 -4.0486 10 1 2.3879 3.5465 -4.4303 11 1 1.2714 1.5160 -5.1451 12 1 0.0775 3.1501 -3.8092 13 7 1.5067 2.1504 1.1715 14 6 1.9289 3.5569 1.1737 15 6 1.2293 4.2979 2.3167 16 6 1.5736 3.6233 3.6410 17 6 0.8546 4.3277 4.8015 18 8 1.9433 4.8121 5.6425 19 6 3.1155 4.4666 5.0966 20 8 4.1876 4.7472 5.5950 21 7 2.9980 3.7831 3.9482 22 6 1.1944 2.1461 3.6011 23 6 1.8952 1.4751 2.4164 24 1 -0.3634 0.5906 0.8411 25 1 -0.3633 0.4330 -0.9319 26 1 -0.3634 -1.0236 0.0910 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 2.9890 0.2366 -3.4364 30 1 1.6605 4.0184 0.2234 31 1 3.0088 3.6119 1.3122 32 1 1.5659 5.3345 2.3382 33 1 0.1506 4.2684 2.1631 34 1 0.2565 5.1607 4.4321 35 1 0.2316 3.6218 5.3507 36 1 3.7334 3.4501 3.4103 37 1 0.1146 2.0507 3.4868 38 1 1.5060 1.6650 4.5282 39 1 1.6023 0.4263 2.3675 40 1 2.9752 1.5451 2.5459 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255175981.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:16 Heat of formation + Delta-G solvation = -69.942217 kcal Electronic energy + Delta-G solvation = -21945.032489 eV Core-core repulsion = 18759.869976 eV Total energy + Delta-G solvation = -3185.162513 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.88581 -38.59657 -37.07621 -35.54963 -33.20673 -31.67041 -30.97701 -30.28246 -27.61644 -25.88545 -23.75743 -22.94434 -22.44668 -21.86036 -19.97022 -18.99788 -17.97431 -16.79204 -16.37741 -16.21731 -15.41228 -14.80971 -14.49024 -14.27881 -14.15835 -13.89683 -13.80084 -13.38430 -13.16790 -12.92433 -12.19764 -12.05320 -11.74834 -11.58869 -11.10702 -11.00046 -10.96650 -10.87962 -10.60867 -10.58020 -10.55265 -10.17803 -9.99344 -9.73716 -9.48326 -9.28551 -8.85940 -8.48356 -7.30809 -6.08816 -4.13310 2.73147 2.75819 3.24194 3.32216 3.34375 3.52969 4.03415 4.32603 4.49005 4.62868 4.76987 5.06330 5.18205 5.22852 5.29703 5.41806 5.60156 5.70572 5.74352 5.88728 5.92803 6.15446 6.24315 6.38025 6.42327 6.52826 6.57914 6.69276 6.81699 7.03505 7.21697 7.28136 7.29896 7.55129 7.64456 7.74362 8.04405 8.12041 8.23750 8.47363 8.91434 9.51423 10.97423 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.029374 B = 0.005232 C = 0.004966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.997390 B = 5350.430342 C = 5637.091783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.113 4.113 3 C 0.218 3.782 4 H -0.003 1.003 5 C -0.500 4.500 6 H 0.063 0.937 7 C 0.061 3.939 8 N -0.891 5.891 9 Si 0.892 3.108 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.527 5.527 14 C 0.064 3.936 15 C -0.118 4.118 16 C 0.123 3.877 17 C 0.049 3.951 18 O -0.334 6.334 19 C 0.645 3.355 20 O -0.534 6.534 21 N -0.720 5.720 22 C -0.115 4.115 23 C 0.051 3.949 24 H 0.047 0.953 25 H 0.054 0.946 26 H 0.014 0.986 27 H 0.092 0.908 28 H 0.013 0.987 29 H 0.261 0.739 30 H 0.094 0.906 31 H 0.018 0.982 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.435 0.565 37 H 0.088 0.912 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.540 3.428 10.042 11.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.151 4.151 3 C 0.112 3.888 4 H 0.014 0.986 5 C -0.538 4.538 6 H 0.081 0.919 7 C -0.140 4.140 8 N -0.530 5.530 9 Si 0.721 3.279 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.198 1.198 13 N -0.252 5.252 14 C -0.064 4.064 15 C -0.157 4.157 16 C 0.036 3.964 17 C -0.026 4.026 18 O -0.244 6.244 19 C 0.398 3.602 20 O -0.420 6.420 21 N -0.392 5.392 22 C -0.153 4.153 23 C -0.078 4.078 24 H 0.066 0.934 25 H 0.073 0.927 26 H 0.034 0.966 27 H 0.111 0.889 28 H 0.032 0.968 29 H 0.071 0.929 30 H 0.112 0.888 31 H 0.037 0.963 32 H 0.086 0.914 33 H 0.106 0.894 34 H 0.125 0.875 35 H 0.124 0.876 36 H 0.278 0.722 37 H 0.106 0.894 38 H 0.085 0.915 39 H 0.100 0.900 40 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -5.590 3.632 10.441 12.388 hybrid contribution 0.907 0.118 -1.286 1.578 sum -4.683 3.751 9.155 10.946 Atomic orbital electron populations 1.21463 0.97219 0.97311 1.01847 1.21591 0.95196 0.98121 1.00167 1.19240 0.92413 0.90810 0.86301 0.98557 1.21038 1.31218 1.11977 0.89606 0.91928 1.24898 0.95135 0.95019 0.98988 1.69865 1.36082 1.22445 1.24611 0.86583 0.79099 0.79265 0.82994 1.20858 1.21290 1.19841 1.62035 1.60210 1.00992 1.02005 1.21943 0.95670 0.90455 0.98369 1.21978 1.02673 0.98491 0.92511 1.21449 0.80831 0.97951 0.96137 1.24474 0.88524 0.99946 0.89643 1.87258 1.15875 1.73194 1.48070 1.18570 0.83953 0.77431 0.80264 1.91053 1.24107 1.60296 1.66532 1.46114 1.09003 1.58969 1.25087 1.21912 1.02439 0.91936 0.99056 1.22073 0.96177 0.99371 0.90164 0.93443 0.92699 0.96644 0.88939 0.96821 0.92933 0.88814 0.96349 0.91426 0.89404 0.87486 0.87560 0.72160 0.89374 0.91483 0.90007 0.96285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.42 9.50 37.16 0.35 -2.07 16 2 C -0.11 -2.46 5.02 -26.73 -0.13 -2.60 16 3 C 0.22 4.90 1.76 -68.87 -0.12 4.77 16 4 H 0.00 -0.08 8.14 -51.93 -0.42 -0.50 16 5 C -0.50 -12.33 6.79 -34.44 -0.23 -12.56 16 6 H 0.06 1.54 6.53 -52.48 -0.34 1.20 16 7 C 0.06 1.57 5.30 -17.82 -0.09 1.48 16 8 N -0.89 -24.00 11.30 55.43 0.63 -23.38 16 9 Si 0.89 20.19 29.54 -169.99 -5.02 15.17 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 13 N -0.53 -9.41 3.56 -227.94 -0.81 -10.22 16 14 C 0.06 1.04 5.14 -3.78 -0.02 1.02 16 15 C -0.12 -1.43 4.91 -26.89 -0.13 -1.56 16 16 C 0.12 1.39 0.88 -131.90 -0.12 1.27 16 17 C 0.05 0.46 7.51 37.48 0.28 0.74 16 18 O -0.33 -4.48 11.10 -38.02 -0.42 -4.90 16 19 C 0.65 9.85 9.16 53.78 0.49 10.35 16 20 O -0.53 -10.16 18.04 -19.11 -0.34 -10.51 16 21 N -0.72 -9.37 5.20 -52.91 -0.28 -9.64 16 22 C -0.11 -1.32 4.91 -26.89 -0.13 -1.45 16 23 C 0.05 0.77 5.08 -3.78 -0.02 0.75 16 24 H 0.05 0.88 7.36 -51.93 -0.38 0.50 16 25 H 0.05 1.20 7.47 -51.93 -0.39 0.82 16 26 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.09 2.33 6.01 -51.93 -0.31 2.01 16 28 H 0.01 0.27 6.36 -51.93 -0.33 -0.06 16 29 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 30 H 0.09 1.72 6.12 -51.93 -0.32 1.40 16 31 H 0.02 0.31 7.44 -51.92 -0.39 -0.08 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.11 0.78 7.71 -51.93 -0.40 0.38 16 35 H 0.11 0.76 7.71 -51.93 -0.40 0.36 16 36 H 0.43 5.71 7.81 -40.82 -0.32 5.39 16 37 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.08 1.30 5.98 -51.93 -0.31 0.99 16 40 H 0.02 0.30 7.44 -51.93 -0.39 -0.09 16 LS Contribution 307.14 15.07 4.63 4.63 Total: -1.00 -28.80 307.14 -7.44 -36.24 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -5.95 Total: 2.46 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: 0.12 Total: 0.15 kcal Atomic # 7 Polarization: -42.78 SS G_CDS: -0.46 Total: -43.24 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: -0.77 Total: -15.41 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -28.80 -7.44 -36.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255175981.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.705 kcal (2) G-P(sol) polarization free energy of solvation -28.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds