Wall clock time and date at job start Mon Mar 30 2020 01:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.46995 * 2 1 4 4 H 1.09002 * 109.47124 * 177.76457 * 3 2 1 5 5 C 1.50699 * 109.47344 * 297.76219 * 3 2 1 6 6 H 1.08005 * 120.00094 * 119.99694 * 5 3 2 7 7 C 1.37877 * 120.00126 * 300.00579 * 5 3 2 8 8 N 1.31512 * 120.00138 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99987 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47128 * 89.99941 * 9 7 5 11 11 H 1.48495 * 109.47022 * 209.99656 * 9 7 5 12 12 H 1.48498 * 109.46900 * 329.99682 * 9 7 5 13 13 N 1.46898 * 109.47358 * 57.76431 * 3 2 1 14 14 C 1.46855 * 111.00388 * 182.45096 * 13 3 2 15 15 C 1.53136 * 109.46575 * 173.67891 * 14 13 3 16 16 C 1.52559 * 109.31779 * 58.29815 * 15 14 13 17 17 C 1.53620 * 110.32465 * 181.41476 * 16 15 14 18 18 O 1.45844 * 103.79863 * 241.16072 * 17 16 15 19 19 C 1.33846 * 109.44556 * 359.97438 * 18 17 16 20 20 O 1.21511 * 123.08464 * 179.97438 * 19 18 17 21 21 N 1.34163 * 113.82070 * 0.02562 * 19 18 17 22 22 C 1.52558 * 110.45060 * 303.65761 * 16 15 14 23 23 C 1.46857 * 111.00064 * 58.12291 * 13 3 2 24 24 H 1.09005 * 109.47308 * 305.07621 * 1 2 3 25 25 H 1.08996 * 109.47140 * 65.07648 * 1 2 3 26 26 H 1.09004 * 109.47252 * 185.08117 * 1 2 3 27 27 H 1.09003 * 109.46783 * 239.99909 * 2 1 3 28 28 H 1.09005 * 109.47223 * 120.00226 * 2 1 3 29 29 H 0.96998 * 120.00252 * 180.02562 * 8 7 5 30 30 H 1.08996 * 109.47262 * 53.67560 * 14 13 3 31 31 H 1.09008 * 109.46936 * 293.67629 * 14 13 3 32 32 H 1.09003 * 109.49415 * 178.24868 * 15 14 13 33 33 H 1.08997 * 109.50067 * 298.34218 * 15 14 13 34 34 H 1.09000 * 110.56017 * 359.73806 * 17 16 15 35 35 H 1.08996 * 110.55886 * 122.58044 * 17 16 15 36 36 H 0.97005 * 125.66901 * 179.97438 * 21 19 18 37 37 H 1.08996 * 109.49750 * 296.38844 * 22 16 15 38 38 H 1.09001 * 109.52020 * 176.30760 * 22 16 15 39 39 H 1.09003 * 109.47253 * 306.32182 * 23 13 3 40 40 H 1.08995 * 109.47391 * 66.32450 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1292 1.4427 0.0401 5 6 1.5834 2.1367 -1.2572 6 1 0.9594 3.0159 -1.1925 7 6 1.9622 1.6495 -2.4902 8 7 2.7223 0.5791 -2.5691 9 14 1.3957 2.5096 -4.0486 10 1 2.3879 3.5465 -4.4303 11 1 1.2714 1.5160 -5.1451 12 1 0.0775 3.1501 -3.8092 13 7 1.5067 2.1504 1.1715 14 6 1.9289 3.5569 1.1737 15 6 1.2293 4.2979 2.3167 16 6 1.5736 3.6233 3.6410 17 6 0.8546 4.3277 4.8015 18 8 1.9433 4.8121 5.6425 19 6 3.1155 4.4666 5.0966 20 8 4.1876 4.7472 5.5950 21 7 2.9980 3.7831 3.9482 22 6 1.1944 2.1461 3.6011 23 6 1.8952 1.4751 2.4164 24 1 -0.3634 0.5906 0.8411 25 1 -0.3633 0.4330 -0.9319 26 1 -0.3634 -1.0236 0.0910 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 2.9890 0.2366 -3.4364 30 1 1.6605 4.0184 0.2234 31 1 3.0088 3.6119 1.3122 32 1 1.5659 5.3345 2.3382 33 1 0.1506 4.2684 2.1631 34 1 0.2565 5.1607 4.4321 35 1 0.2316 3.6218 5.3507 36 1 3.7334 3.4501 3.4103 37 1 0.1146 2.0507 3.4868 38 1 1.5060 1.6650 4.5282 39 1 1.6023 0.4263 2.3675 40 1 2.9752 1.5451 2.5459 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255175981.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:15 Heat of formation + Delta-G solvation = -90.151125 kcal Electronic energy + Delta-G solvation = -21945.908813 eV Core-core repulsion = 18759.869976 eV Total energy + Delta-G solvation = -3186.038837 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.92111 -39.91062 -38.33529 -36.89271 -34.72891 -33.27301 -32.17268 -31.58643 -28.96140 -27.39984 -25.29600 -24.15144 -23.72152 -23.00671 -21.31681 -20.48957 -19.00932 -18.12736 -17.78485 -17.60130 -16.95562 -16.11498 -15.77606 -15.73793 -15.25212 -15.11739 -14.94370 -14.73780 -14.50661 -14.24820 -13.80010 -13.50972 -13.01914 -12.81960 -12.79696 -12.65327 -12.35949 -12.16260 -12.05140 -11.93868 -11.81852 -11.64067 -11.58115 -11.34968 -11.03701 -10.73604 -10.46409 -10.25498 -8.85671 -8.06058 -6.15460 1.42427 1.45401 1.53546 1.60475 1.70280 2.44464 2.61792 3.14540 3.23234 3.39503 3.61829 3.65860 4.16552 4.30752 4.39886 4.48327 4.49091 4.57115 4.62631 4.73529 4.78035 4.84467 4.92957 4.97692 5.05912 5.16501 5.19989 5.29217 5.34839 5.50969 5.57870 5.71625 5.76752 5.83597 5.94460 6.25304 6.36255 6.44458 6.80309 6.98138 6.99040 7.52764 8.99223 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.029374 B = 0.005232 C = 0.004966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.997390 B = 5350.430342 C = 5637.091783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.109 4.109 3 C 0.223 3.777 4 H -0.049 1.049 5 C -0.499 4.499 6 H 0.062 0.938 7 C 0.013 3.987 8 N -0.921 5.921 9 Si 0.948 3.052 10 H -0.283 1.283 11 H -0.290 1.290 12 H -0.264 1.264 13 N -0.521 5.521 14 C 0.062 3.938 15 C -0.106 4.106 16 C 0.123 3.877 17 C 0.051 3.949 18 O -0.341 6.341 19 C 0.647 3.353 20 O -0.582 6.582 21 N -0.715 5.715 22 C -0.104 4.104 23 C 0.048 3.952 24 H 0.064 0.936 25 H 0.030 0.970 26 H 0.034 0.966 27 H 0.056 0.944 28 H 0.028 0.972 29 H 0.258 0.742 30 H 0.069 0.931 31 H 0.004 0.996 32 H 0.078 0.922 33 H 0.108 0.892 34 H 0.136 0.864 35 H 0.139 0.861 36 H 0.431 0.569 37 H 0.111 0.889 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.064 4.184 11.463 14.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.147 4.147 3 C 0.116 3.884 4 H -0.032 1.032 5 C -0.538 4.538 6 H 0.080 0.920 7 C -0.186 4.186 8 N -0.562 5.562 9 Si 0.775 3.225 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.189 1.189 13 N -0.246 5.246 14 C -0.066 4.066 15 C -0.144 4.144 16 C 0.037 3.963 17 C -0.022 4.022 18 O -0.251 6.251 19 C 0.400 3.600 20 O -0.471 6.471 21 N -0.385 5.385 22 C -0.142 4.142 23 C -0.080 4.080 24 H 0.083 0.917 25 H 0.049 0.951 26 H 0.053 0.947 27 H 0.075 0.925 28 H 0.046 0.954 29 H 0.067 0.933 30 H 0.088 0.912 31 H 0.022 0.978 32 H 0.097 0.903 33 H 0.126 0.874 34 H 0.154 0.846 35 H 0.157 0.843 36 H 0.274 0.726 37 H 0.129 0.871 38 H 0.102 0.898 39 H 0.095 0.905 40 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges -8.163 4.396 11.866 15.059 hybrid contribution 1.694 -0.135 -1.731 2.426 sum -6.469 4.262 10.136 12.757 Atomic orbital electron populations 1.21320 0.95293 0.98685 1.01195 1.21455 0.96757 0.97390 0.99126 1.18995 0.89760 0.91777 0.87848 1.03161 1.21314 1.30281 1.11648 0.90555 0.91956 1.25598 0.95517 0.95657 1.01779 1.70013 1.37503 1.23845 1.24817 0.85703 0.78910 0.78137 0.79773 1.20887 1.21580 1.18874 1.61987 1.59454 1.01515 1.01608 1.21941 0.95447 0.89890 0.99323 1.21897 1.03280 0.98330 0.90913 1.21570 0.79910 0.98158 0.96677 1.24852 0.87359 1.01566 0.88436 1.87246 1.15961 1.73166 1.48698 1.18610 0.83929 0.77100 0.80319 1.91012 1.26148 1.62116 1.67823 1.46172 1.09989 1.58061 1.24310 1.21876 1.03253 0.91513 0.97593 1.22157 0.96111 0.99432 0.90348 0.91710 0.95095 0.94684 0.92505 0.95363 0.93328 0.91233 0.97826 0.90310 0.87360 0.84638 0.84296 0.72560 0.87111 0.89788 0.90529 0.97501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.16 9.50 71.98 0.68 -3.48 16 2 C -0.11 -4.81 5.02 30.59 0.15 -4.66 16 3 C 0.22 10.24 1.76 44.17 0.08 10.32 16 4 H -0.05 -2.65 8.14 -2.39 -0.02 -2.67 16 5 C -0.50 -25.03 6.79 25.60 0.17 -24.85 16 6 H 0.06 3.07 6.53 -2.91 -0.02 3.05 16 7 C 0.01 0.67 5.30 84.65 0.45 1.12 16 8 N -0.92 -51.33 11.30 21.45 0.24 -51.09 16 9 Si 0.95 41.89 29.54 68.60 2.03 43.92 16 10 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 11 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 12 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 13 N -0.52 -18.16 3.56 -875.07 -3.11 -21.27 16 14 C 0.06 1.99 5.14 86.36 0.44 2.44 16 15 C -0.11 -2.23 4.91 30.49 0.15 -2.08 16 16 C 0.12 2.34 0.88 3.50 0.00 2.34 16 17 C 0.05 0.71 7.51 72.19 0.54 1.25 16 18 O -0.34 -8.09 11.10 -48.01 -0.53 -8.62 16 19 C 0.65 18.79 9.16 129.89 1.19 19.98 16 20 O -0.58 -22.09 18.04 19.64 0.35 -21.74 16 21 N -0.71 -17.45 5.20 -552.80 -2.87 -20.32 16 22 C -0.10 -1.98 4.91 30.49 0.15 -1.83 16 23 C 0.05 1.37 5.08 86.36 0.44 1.81 16 24 H 0.06 2.25 7.36 -2.38 -0.02 2.23 16 25 H 0.03 1.32 7.47 -2.39 -0.02 1.30 16 26 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.06 2.94 6.01 -2.39 -0.01 2.93 16 28 H 0.03 1.13 6.36 -2.38 -0.02 1.12 16 29 H 0.26 13.87 8.31 -92.71 -0.77 13.10 16 30 H 0.07 2.55 6.12 -2.39 -0.01 2.53 16 31 H 0.00 0.12 7.44 -2.38 -0.02 0.10 16 32 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.14 1.18 7.71 -2.39 -0.02 1.16 16 35 H 0.14 1.10 7.71 -2.39 -0.02 1.08 16 36 H 0.43 11.21 7.81 -92.70 -0.72 10.48 16 37 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.08 2.29 5.98 -2.39 -0.01 2.27 16 40 H 0.01 0.21 7.44 -2.39 -0.02 0.20 16 Total: -1.00 -65.40 307.14 0.88 -64.52 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: 0.32 Total: 12.24 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: 4.46 Total: 2.36 kcal Atomic # 7 Polarization: -86.94 SS G_CDS: -5.74 Total: -92.69 kcal Atomic # 8 Polarization: -30.18 SS G_CDS: -0.18 Total: -30.36 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.92 kcal Total: -65.40 0.88 -64.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255175981.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.630 kcal (2) G-P(sol) polarization free energy of solvation -65.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds