Wall clock time and date at job start Mon Mar 30 2020 01:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47124 * 2 1 4 4 H 1.09004 * 109.47210 * 303.19456 * 3 2 1 5 5 C 1.50706 * 109.47179 * 183.19439 * 3 2 1 6 6 H 1.07999 * 119.99768 * 240.00051 * 5 3 2 7 7 C 1.37882 * 119.99824 * 60.00203 * 5 3 2 8 8 N 1.31511 * 120.00135 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 119.99765 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47486 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47337 * 119.99838 * 9 7 5 12 12 H 1.48503 * 109.47248 * 239.99836 * 9 7 5 13 13 N 1.46894 * 109.47183 * 63.19428 * 3 2 1 14 14 C 1.46866 * 110.99888 * 66.90948 * 13 3 2 15 15 C 1.53145 * 109.44890 * 186.34464 * 14 13 3 16 16 C 1.52553 * 109.31856 * 301.71499 * 15 14 13 17 17 C 1.53618 * 110.32538 * 178.59219 * 16 15 14 18 18 O 1.45837 * 103.93884 * 118.89748 * 17 16 15 19 19 C 1.33853 * 109.44362 * 359.92641 * 18 17 16 20 20 O 1.21509 * 123.09236 * 179.97438 * 19 18 17 21 21 N 1.34171 * 113.81407 * 0.02562 * 19 18 17 22 22 C 1.52550 * 110.46855 * 56.33479 * 16 15 14 23 23 C 1.46851 * 111.00276 * 191.26090 * 13 3 2 24 24 H 1.09002 * 109.47141 * 64.77881 * 1 2 3 25 25 H 1.08994 * 109.46846 * 184.77817 * 1 2 3 26 26 H 1.09004 * 109.47146 * 304.77757 * 1 2 3 27 27 H 1.09007 * 109.47005 * 240.00511 * 2 1 3 28 28 H 1.08997 * 109.47314 * 120.00302 * 2 1 3 29 29 H 0.97002 * 120.00206 * 179.97438 * 8 7 5 30 30 H 1.09000 * 109.46897 * 66.35433 * 14 13 3 31 31 H 1.08997 * 109.47156 * 306.34141 * 14 13 3 32 32 H 1.09000 * 109.49148 * 181.75804 * 15 14 13 33 33 H 1.09004 * 109.49593 * 61.67135 * 15 14 13 34 34 H 1.09001 * 110.55965 * 0.24431 * 17 16 15 35 35 H 1.08998 * 110.56045 * 237.55134 * 17 16 15 36 36 H 0.97002 * 125.66581 * 179.97438 * 21 19 18 37 37 H 1.08997 * 109.49830 * 63.62690 * 22 16 15 38 38 H 1.08999 * 109.49550 * 183.71689 * 22 16 15 39 39 H 1.08998 * 109.47332 * 293.65562 * 23 13 3 40 40 H 1.08999 * 109.47202 * 53.66384 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6306 1.9726 -0.8600 5 6 3.5449 1.4432 -0.0792 6 1 4.1269 1.8960 0.7099 7 6 4.1787 0.8659 -1.1590 8 7 3.4700 0.3141 -2.1196 9 14 6.0441 0.8662 -1.2568 10 1 6.6025 1.5439 -0.0593 11 1 6.5373 -0.5335 -1.3090 12 1 6.4756 1.5890 -2.4802 13 7 1.6143 2.1123 1.2361 14 6 2.2780 1.5260 2.4078 15 6 1.6945 2.1389 3.6842 16 6 1.8844 3.6522 3.6499 17 6 1.2752 4.2950 4.9051 18 8 2.4106 4.9368 5.5575 19 6 3.5175 4.7253 4.8352 20 8 4.6094 5.1527 5.1538 21 7 3.3102 3.9987 3.7264 22 6 1.2519 4.2409 2.3928 23 6 1.8497 3.5598 1.1582 24 1 -0.3633 0.4379 -0.9297 25 1 -0.3633 -1.0241 0.0856 26 1 -0.3634 0.5862 0.8441 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 3.9159 -0.0917 -2.8795 30 1 3.3472 1.7331 2.3611 31 1 2.1164 0.4481 2.4153 32 1 2.2081 1.7273 4.5530 33 1 0.6312 1.9070 3.7459 34 1 0.8417 3.5333 5.5533 35 1 0.5235 5.0348 4.6299 36 1 3.9888 3.7450 3.0814 37 1 0.1750 4.0738 2.4148 38 1 1.4535 5.3113 2.3512 39 1 2.9219 3.7521 1.1206 40 1 1.3774 3.9569 0.2597 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255175988.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:18 Heat of formation + Delta-G solvation = -94.487483 kcal Electronic energy + Delta-G solvation = -22067.997928 eV Core-core repulsion = 18881.771053 eV Total energy + Delta-G solvation = -3186.226875 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.88692 -39.89856 -38.32519 -36.81453 -34.63971 -33.36800 -32.09264 -31.68729 -29.05388 -27.37488 -24.94742 -24.29043 -23.66159 -22.96884 -21.28342 -20.62351 -19.04703 -18.33596 -17.79881 -17.35066 -16.97183 -16.15608 -15.80291 -15.64579 -15.25343 -15.06126 -14.93618 -14.66472 -14.49773 -14.31691 -13.56484 -13.30586 -13.12829 -13.02278 -12.95013 -12.60776 -12.44230 -12.17339 -12.06980 -11.99510 -11.75385 -11.58092 -11.51621 -11.45120 -11.06095 -10.89021 -10.43879 -10.28241 -8.89309 -8.03911 -6.25593 1.32078 1.37738 1.44434 1.61264 1.70839 2.37396 2.63464 3.14936 3.17215 3.45662 3.63922 3.68086 4.18685 4.35112 4.44909 4.51661 4.57052 4.63560 4.64988 4.75937 4.82914 4.88399 4.97919 4.99250 5.08263 5.15617 5.24609 5.35494 5.37452 5.50310 5.55790 5.66935 5.72327 5.84184 6.11620 6.20412 6.26986 6.39527 6.72332 6.96946 6.99176 7.45676 8.90299 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.020127 B = 0.006683 C = 0.005418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.864894 B = 4188.627794 C = 5166.769428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.105 4.105 3 C 0.220 3.780 4 H 0.004 0.996 5 C -0.546 4.546 6 H 0.050 0.950 7 C 0.024 3.976 8 N -0.909 5.909 9 Si 0.936 3.064 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.285 1.285 13 N -0.520 5.520 14 C 0.062 3.938 15 C -0.107 4.107 16 C 0.123 3.877 17 C 0.051 3.949 18 O -0.341 6.341 19 C 0.647 3.353 20 O -0.584 6.584 21 N -0.717 5.717 22 C -0.104 4.104 23 C 0.061 3.939 24 H 0.030 0.970 25 H 0.042 0.958 26 H 0.067 0.933 27 H 0.056 0.944 28 H 0.031 0.969 29 H 0.260 0.740 30 H 0.013 0.987 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.112 0.888 34 H 0.138 0.862 35 H 0.139 0.861 36 H 0.430 0.570 37 H 0.113 0.887 38 H 0.079 0.921 39 H 0.010 0.990 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.763 4.242 10.777 15.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.144 4.144 3 C 0.113 3.887 4 H 0.022 0.978 5 C -0.585 4.585 6 H 0.069 0.931 7 C -0.176 4.176 8 N -0.548 5.548 9 Si 0.764 3.236 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.211 1.211 13 N -0.244 5.244 14 C -0.066 4.066 15 C -0.146 4.146 16 C 0.037 3.963 17 C -0.023 4.023 18 O -0.251 6.251 19 C 0.400 3.600 20 O -0.473 6.473 21 N -0.387 5.387 22 C -0.143 4.143 23 C -0.068 4.068 24 H 0.049 0.951 25 H 0.061 0.939 26 H 0.086 0.914 27 H 0.074 0.926 28 H 0.050 0.950 29 H 0.069 0.931 30 H 0.031 0.969 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.131 0.869 34 H 0.156 0.844 35 H 0.156 0.844 36 H 0.273 0.727 37 H 0.131 0.869 38 H 0.097 0.903 39 H 0.028 0.972 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.882 4.467 11.162 15.563 hybrid contribution 2.772 -0.322 -1.344 3.098 sum -7.110 4.145 9.817 12.811 Atomic orbital electron populations 1.21579 0.95982 0.99944 1.00860 1.21422 0.94708 0.98125 1.00133 1.19017 0.91169 0.91594 0.86932 0.97774 1.22034 0.94292 1.36673 1.05536 0.93145 1.25512 1.01048 0.95267 0.95735 1.69990 1.35990 1.38688 1.10177 0.85851 0.82537 0.77567 0.77691 1.19917 1.20866 1.21093 1.62350 1.56507 1.02318 1.03184 1.21907 0.95332 0.99183 0.90200 1.21926 1.04250 0.91302 0.97087 1.21651 0.79889 0.97415 0.97332 1.24857 0.86524 0.99329 0.91559 1.87242 1.18464 1.71376 1.47970 1.18610 0.83974 0.77686 0.79745 1.91007 1.23421 1.58103 1.74787 1.46310 1.11981 1.55281 1.25149 1.21887 1.02225 0.99143 0.90998 1.21893 0.97519 0.89252 0.98155 0.95127 0.93904 0.91394 0.92561 0.94981 0.93065 0.96924 0.91639 0.90443 0.86930 0.84431 0.84361 0.72683 0.86851 0.90289 0.97175 0.92110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.48 9.85 71.98 0.71 -3.77 16 2 C -0.11 -4.60 5.14 30.59 0.16 -4.44 16 3 C 0.22 9.91 1.72 44.17 0.08 9.98 16 4 H 0.00 0.22 7.96 -2.38 -0.02 0.20 16 5 C -0.55 -27.55 7.26 25.60 0.19 -27.36 16 6 H 0.05 2.55 5.86 -2.91 -0.02 2.54 16 7 C 0.02 1.29 5.30 84.66 0.45 1.74 16 8 N -0.91 -50.20 11.30 21.45 0.24 -49.96 16 9 Si 0.94 42.83 29.54 68.60 2.03 44.86 16 10 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 12 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 13 N -0.52 -17.87 3.87 -875.01 -3.39 -21.26 16 14 C 0.06 1.95 4.68 86.36 0.40 2.36 16 15 C -0.11 -2.22 4.91 30.49 0.15 -2.07 16 16 C 0.12 2.46 0.89 3.43 0.00 2.46 16 17 C 0.05 0.72 7.50 72.19 0.54 1.27 16 18 O -0.34 -8.46 11.10 -48.07 -0.53 -8.99 16 19 C 0.65 20.00 9.17 129.89 1.19 21.19 16 20 O -0.58 -23.42 18.04 19.65 0.35 -23.07 16 21 N -0.72 -19.21 5.23 -552.17 -2.89 -22.09 16 22 C -0.10 -2.12 4.91 30.49 0.15 -1.97 16 23 C 0.06 1.88 5.11 86.36 0.44 2.32 16 24 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.07 2.17 7.56 -2.38 -0.02 2.15 16 27 H 0.06 2.87 5.99 -2.38 -0.01 2.86 16 28 H 0.03 1.37 6.32 -2.39 -0.02 1.35 16 29 H 0.26 13.82 8.31 -92.71 -0.77 13.04 16 30 H 0.01 0.46 5.66 -2.39 -0.01 0.45 16 31 H 0.07 2.21 6.19 -2.39 -0.01 2.19 16 32 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.11 1.79 8.14 -2.38 -0.02 1.78 16 34 H 0.14 1.18 7.71 -2.39 -0.02 1.16 16 35 H 0.14 1.16 7.71 -2.39 -0.02 1.14 16 36 H 0.43 12.83 7.85 -92.71 -0.73 12.10 16 37 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.08 1.48 8.14 -2.39 -0.02 1.47 16 39 H 0.01 0.36 6.72 -2.39 -0.02 0.34 16 40 H 0.06 2.00 7.99 -2.39 -0.02 1.98 16 Total: -1.00 -65.12 307.50 0.59 -64.53 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: 0.32 Total: 14.27 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: 4.46 Total: 1.71 kcal Atomic # 7 Polarization: -87.27 SS G_CDS: -6.03 Total: -93.31 kcal Atomic # 8 Polarization: -31.88 SS G_CDS: -0.18 Total: -32.06 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -65.12 0.59 -64.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255175988.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.961 kcal (2) G-P(sol) polarization free energy of solvation -65.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds