Wall clock time and date at job start Mon Mar 30 2020 01:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50701 * 119.99924 * 2 1 4 4 C 1.52997 * 109.47145 * 119.99450 * 3 2 1 5 5 O 1.42900 * 109.47058 * 359.97438 * 3 2 1 6 6 C 1.52999 * 109.46916 * 239.99500 * 3 2 1 7 7 C 1.50701 * 109.47163 * 57.29415 * 6 3 2 8 8 O 1.21275 * 119.99874 * 4.19220 * 7 6 3 9 9 N 1.34776 * 119.99793 * 184.18893 * 7 6 3 10 10 C 1.46496 * 119.99659 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.46958 * 174.93000 * 10 9 7 12 12 N 1.46501 * 115.55144 * 81.56709 * 11 10 9 13 13 C 1.36938 * 120.00110 * 65.10584 * 12 11 10 14 14 H 1.07996 * 119.99710 * 354.93248 * 13 12 11 15 15 C 1.38810 * 120.00140 * 174.65469 * 13 12 11 16 16 N 1.31621 * 119.99734 * 0.02562 * 15 13 12 17 17 Si 1.86789 * 120.00136 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47224 * 60.00237 * 17 15 13 19 19 H 1.48505 * 109.47541 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47504 * 300.00074 * 17 15 13 21 21 C 1.53006 * 117.49870 * 227.23711 * 11 10 9 22 22 C 1.52999 * 117.49849 * 295.89521 * 11 10 9 23 23 H 1.07998 * 120.00082 * 0.02562 * 1 2 3 24 24 H 1.08001 * 119.99782 * 179.97438 * 1 2 3 25 25 H 1.08002 * 120.00226 * 179.97438 * 2 1 3 26 26 H 1.09000 * 109.47115 * 184.72877 * 4 3 2 27 27 H 1.09007 * 109.47506 * 304.72360 * 4 3 2 28 28 H 1.09006 * 109.47565 * 64.72866 * 4 3 2 29 29 H 0.96702 * 114.00064 * 299.99829 * 5 3 2 30 30 H 1.09005 * 109.47020 * 297.29154 * 6 3 2 31 31 H 1.08999 * 109.47033 * 177.29810 * 6 3 2 32 32 H 0.97000 * 120.00392 * 359.97438 * 9 7 6 33 33 H 1.09003 * 109.47789 * 54.92920 * 10 9 7 34 34 H 1.08998 * 109.47281 * 294.92441 * 10 9 7 35 35 H 0.97000 * 119.99618 * 245.10493 * 12 11 10 36 36 H 0.96996 * 119.99911 * 180.02562 * 16 15 13 37 37 H 1.08994 * 117.49841 * 214.99994 * 21 11 10 38 38 H 1.09004 * 117.49883 * 0.02562 * 21 11 10 39 39 H 1.08998 * 117.50056 * 359.97438 * 22 11 10 40 40 H 1.09005 * 117.50114 * 144.97411 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9430 1.3862 1.2493 5 8 1.1349 2.3912 -0.0006 6 6 2.9432 1.3861 -1.2492 7 6 2.0843 1.2395 -2.4788 8 8 0.8789 1.1618 -2.3707 9 7 2.6559 1.1948 -3.6985 10 6 1.8209 1.0529 -4.8938 11 6 2.6976 1.1557 -6.1435 12 7 3.4019 -0.0713 -6.5240 13 6 2.6924 -1.1726 -6.9226 14 1 1.6133 -1.1646 -6.8787 15 6 3.3597 -2.2970 -7.3885 16 7 4.6746 -2.3048 -7.4466 17 14 2.3919 -3.7994 -7.9315 18 1 1.4890 -3.4287 -9.0508 19 1 3.3314 -4.8568 -8.3837 20 1 1.5855 -4.3071 -6.7926 21 6 2.2171 2.0727 -7.2701 22 6 3.4074 2.4864 -6.4010 23 1 -0.5400 0.9353 -0.0004 24 1 -0.5400 -0.9353 -0.0004 25 1 1.8501 -0.9353 0.0004 26 1 3.4233 2.3638 1.2926 27 1 2.3269 1.2445 2.1373 28 1 3.7055 0.6083 1.2081 29 1 0.5439 2.4030 -0.7659 30 1 3.6829 0.5858 -1.2251 31 1 3.4515 2.3500 -1.2738 32 1 3.6200 1.2574 -3.7850 33 1 1.0714 1.8442 -4.9097 34 1 1.3245 0.0826 -4.8772 35 1 4.3709 -0.1035 -6.4935 36 1 5.1410 -3.0904 -7.7725 37 1 2.4251 1.7631 -8.2943 38 1 1.2766 2.6031 -7.1208 39 1 3.2493 3.2888 -5.6804 40 1 4.3985 2.4490 -6.8531 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277050317.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:35 Heat of formation + Delta-G solvation = -33.181765 kcal Electronic energy + Delta-G solvation = -20864.528113 eV Core-core repulsion = 17680.959653 eV Total energy + Delta-G solvation = -3183.568460 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.09979 -38.12427 -37.08000 -33.80212 -33.06034 -32.88380 -31.23141 -29.74929 -28.67531 -25.94853 -23.93559 -22.46443 -21.90212 -20.27427 -19.58290 -19.09961 -17.21039 -17.05423 -16.68409 -15.93498 -15.62605 -15.19673 -14.63334 -14.33058 -14.07214 -13.81794 -13.24319 -13.12048 -12.77824 -12.58178 -12.40866 -12.11894 -11.95331 -11.78998 -11.62343 -11.03802 -10.99887 -10.97653 -10.89742 -10.35659 -10.31587 -10.07550 -9.85505 -9.73939 -9.37377 -9.07734 -8.87501 -8.63543 -7.11267 -5.87604 -3.18384 2.46712 2.85250 3.39097 3.41709 3.43980 3.44981 4.27091 4.38496 4.55855 4.73052 4.75884 4.89417 5.18561 5.25033 5.35067 5.36306 5.43015 5.45096 5.51551 5.60035 5.72070 5.75811 5.77571 6.01163 6.05909 6.10757 6.20320 6.39601 6.52856 6.62109 6.72439 6.73950 6.79622 6.92560 7.64837 7.75255 7.81625 8.30607 8.47728 9.41805 9.94873 10.30163 11.34245 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.019576 B = 0.004768 C = 0.004269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.991084 B = 5870.472025 C = 6557.164514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.191 4.191 3 C 0.179 3.821 4 C -0.134 4.134 5 O -0.564 6.564 6 C -0.169 4.169 7 C 0.511 3.489 8 O -0.549 6.549 9 N -0.709 5.709 10 C 0.148 3.852 11 C 0.127 3.873 12 N -0.689 5.689 13 C -0.240 4.240 14 H 0.072 0.928 15 C -0.008 4.008 16 N -0.932 5.932 17 Si 0.908 3.092 18 H -0.284 1.284 19 H -0.291 1.291 20 H -0.285 1.285 21 C -0.187 4.187 22 C -0.185 4.185 23 H 0.101 0.899 24 H 0.092 0.908 25 H 0.108 0.892 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.387 0.613 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.401 0.599 33 H 0.060 0.940 34 H 0.075 0.925 35 H 0.387 0.613 36 H 0.257 0.743 37 H 0.095 0.905 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.975 9.068 12.749 15.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.209 4.209 3 C 0.138 3.862 4 C -0.191 4.191 5 O -0.375 6.375 6 C -0.209 4.209 7 C 0.297 3.703 8 O -0.429 6.429 9 N -0.358 5.358 10 C 0.022 3.978 11 C 0.033 3.967 12 N -0.328 5.328 13 C -0.370 4.370 14 H 0.090 0.910 15 C -0.205 4.205 16 N -0.579 5.579 17 Si 0.739 3.261 18 H -0.211 1.211 19 H -0.216 1.216 20 H -0.212 1.212 21 C -0.228 4.228 22 C -0.223 4.223 23 H 0.119 0.881 24 H 0.110 0.890 25 H 0.126 0.874 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.240 0.760 30 H 0.119 0.881 31 H 0.119 0.881 32 H 0.235 0.765 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.222 0.778 36 H 0.067 0.933 37 H 0.114 0.886 38 H 0.100 0.900 39 H 0.105 0.895 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.627 8.969 13.275 16.235 hybrid contribution 0.134 -1.164 -1.180 1.662 sum -2.494 7.805 12.095 14.609 Atomic orbital electron populations 1.23615 0.95990 1.01588 0.97585 1.23260 0.96867 0.97877 1.02938 1.19760 0.88068 0.85257 0.93114 1.21708 0.98739 1.02510 0.96176 1.86389 1.51074 1.48790 1.51295 1.22444 0.99878 1.05054 0.93540 1.20518 0.88867 0.76184 0.84686 1.90589 1.14919 1.50947 1.86438 1.45959 1.11089 1.72959 1.05838 1.21244 0.92241 1.01805 0.82494 1.20183 0.97993 0.85034 0.93506 1.41774 1.05461 1.07129 1.78486 1.19117 0.91061 0.91530 1.35340 0.91048 1.24752 0.95585 0.98574 1.01554 1.69646 1.05909 1.29928 1.52466 0.86256 0.78736 0.82529 0.78614 1.21100 1.21640 1.21160 1.23374 0.96887 1.04536 0.97971 1.23074 0.97684 0.97777 1.03784 0.88113 0.88979 0.87375 0.91698 0.91664 0.91033 0.75970 0.88059 0.88115 0.76514 0.92140 0.90678 0.77761 0.93335 0.88607 0.89954 0.89507 0.89004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 12.66 29.01 0.37 -1.62 16 2 C -0.19 -2.45 7.48 -36.03 -0.27 -2.72 16 3 C 0.18 2.13 1.08 -91.77 -0.10 2.03 16 4 C -0.13 -1.27 8.83 37.16 0.33 -0.94 16 5 O -0.56 -7.60 11.93 -52.94 -0.63 -8.23 16 6 C -0.17 -1.90 4.98 -27.88 -0.14 -2.03 16 7 C 0.51 7.48 7.32 -10.99 -0.08 7.40 16 8 O -0.55 -9.32 11.94 -12.14 -0.15 -9.47 16 9 N -0.71 -10.66 5.50 -60.30 -0.33 -10.99 16 10 C 0.15 2.60 5.74 -4.04 -0.02 2.57 16 11 C 0.13 2.36 2.15 -131.82 -0.28 2.08 16 12 N -0.69 -16.16 5.49 -47.23 -0.26 -16.42 16 13 C -0.24 -6.38 9.55 -15.06 -0.14 -6.52 16 14 H 0.07 1.88 7.76 -52.49 -0.41 1.48 16 15 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 16 N -0.93 -27.10 13.06 55.49 0.72 -26.38 16 17 Si 0.91 22.03 29.55 -169.99 -5.02 17.00 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 19 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 21 C -0.19 -3.19 10.11 -26.69 -0.27 -3.46 16 22 C -0.19 -2.87 10.12 -26.69 -0.27 -3.14 16 23 H 0.10 1.34 6.41 -52.49 -0.34 1.00 16 24 H 0.09 1.13 8.06 -52.49 -0.42 0.70 16 25 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.39 5.35 5.70 45.56 0.26 5.61 16 30 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.40 5.48 8.48 -40.82 -0.35 5.13 16 33 H 0.06 1.01 7.93 -51.93 -0.41 0.60 16 34 H 0.07 1.56 7.71 -51.93 -0.40 1.16 16 35 H 0.39 9.66 8.04 -40.82 -0.33 9.33 16 36 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 37 H 0.10 1.79 8.14 -51.93 -0.42 1.37 16 38 H 0.08 1.25 8.07 -51.93 -0.42 0.83 16 39 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 LS Contribution 333.98 15.07 5.03 5.03 Total: -1.00 -29.95 333.98 -7.37 -37.32 By element: Atomic # 1 Polarization: 24.59 SS G_CDS: -5.75 Total: 18.83 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: -0.98 Total: -6.71 kcal Atomic # 7 Polarization: -53.92 SS G_CDS: 0.13 Total: -53.78 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: -0.78 Total: -17.70 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.95 -7.37 -37.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277050317.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.136 kcal (2) G-P(sol) polarization free energy of solvation -29.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds