Wall clock time and date at job start Mon Mar 30 2020 01:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50701 * 119.99924 * 2 1 4 4 C 1.52997 * 109.47145 * 119.99450 * 3 2 1 5 5 O 1.42900 * 109.47058 * 359.97438 * 3 2 1 6 6 C 1.52999 * 109.46916 * 239.99500 * 3 2 1 7 7 C 1.50701 * 109.47163 * 57.29415 * 6 3 2 8 8 O 1.21275 * 119.99874 * 4.19220 * 7 6 3 9 9 N 1.34776 * 119.99793 * 184.18893 * 7 6 3 10 10 C 1.46496 * 119.99659 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.46958 * 174.93000 * 10 9 7 12 12 N 1.46501 * 115.55144 * 81.56709 * 11 10 9 13 13 C 1.36938 * 120.00110 * 65.10584 * 12 11 10 14 14 H 1.07996 * 119.99710 * 354.93248 * 13 12 11 15 15 C 1.38810 * 120.00140 * 174.65469 * 13 12 11 16 16 N 1.31621 * 119.99734 * 0.02562 * 15 13 12 17 17 Si 1.86789 * 120.00136 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47224 * 60.00237 * 17 15 13 19 19 H 1.48505 * 109.47541 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47504 * 300.00074 * 17 15 13 21 21 C 1.53006 * 117.49870 * 227.23711 * 11 10 9 22 22 C 1.52999 * 117.49849 * 295.89521 * 11 10 9 23 23 H 1.07998 * 120.00082 * 0.02562 * 1 2 3 24 24 H 1.08001 * 119.99782 * 179.97438 * 1 2 3 25 25 H 1.08002 * 120.00226 * 179.97438 * 2 1 3 26 26 H 1.09000 * 109.47115 * 184.72877 * 4 3 2 27 27 H 1.09007 * 109.47506 * 304.72360 * 4 3 2 28 28 H 1.09006 * 109.47565 * 64.72866 * 4 3 2 29 29 H 0.96702 * 114.00064 * 299.99829 * 5 3 2 30 30 H 1.09005 * 109.47020 * 297.29154 * 6 3 2 31 31 H 1.08999 * 109.47033 * 177.29810 * 6 3 2 32 32 H 0.97000 * 120.00392 * 359.97438 * 9 7 6 33 33 H 1.09003 * 109.47789 * 54.92920 * 10 9 7 34 34 H 1.08998 * 109.47281 * 294.92441 * 10 9 7 35 35 H 0.97000 * 119.99618 * 245.10493 * 12 11 10 36 36 H 0.96996 * 119.99911 * 180.02562 * 16 15 13 37 37 H 1.08994 * 117.49841 * 214.99994 * 21 11 10 38 38 H 1.09004 * 117.49883 * 0.02562 * 21 11 10 39 39 H 1.08998 * 117.50056 * 359.97438 * 22 11 10 40 40 H 1.09005 * 117.50114 * 144.97411 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9430 1.3862 1.2493 5 8 1.1349 2.3912 -0.0006 6 6 2.9432 1.3861 -1.2492 7 6 2.0843 1.2395 -2.4788 8 8 0.8789 1.1618 -2.3707 9 7 2.6559 1.1948 -3.6985 10 6 1.8209 1.0529 -4.8938 11 6 2.6976 1.1557 -6.1435 12 7 3.4019 -0.0713 -6.5240 13 6 2.6924 -1.1726 -6.9226 14 1 1.6133 -1.1646 -6.8787 15 6 3.3597 -2.2970 -7.3885 16 7 4.6746 -2.3048 -7.4466 17 14 2.3919 -3.7994 -7.9315 18 1 1.4890 -3.4287 -9.0508 19 1 3.3314 -4.8568 -8.3837 20 1 1.5855 -4.3071 -6.7926 21 6 2.2171 2.0727 -7.2701 22 6 3.4074 2.4864 -6.4010 23 1 -0.5400 0.9353 -0.0004 24 1 -0.5400 -0.9353 -0.0004 25 1 1.8501 -0.9353 0.0004 26 1 3.4233 2.3638 1.2926 27 1 2.3269 1.2445 2.1373 28 1 3.7055 0.6083 1.2081 29 1 0.5439 2.4030 -0.7659 30 1 3.6829 0.5858 -1.2251 31 1 3.4515 2.3500 -1.2738 32 1 3.6200 1.2574 -3.7850 33 1 1.0714 1.8442 -4.9097 34 1 1.3245 0.0826 -4.8772 35 1 4.3709 -0.1035 -6.4935 36 1 5.1410 -3.0904 -7.7725 37 1 2.4251 1.7631 -8.2943 38 1 1.2766 2.6031 -7.1208 39 1 3.2493 3.2888 -5.6804 40 1 4.3985 2.4490 -6.8531 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277050317.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:35 Heat of formation + Delta-G solvation = -54.237293 kcal Electronic energy + Delta-G solvation = -20865.441149 eV Core-core repulsion = 17680.959653 eV Total energy + Delta-G solvation = -3184.481496 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.21962 -39.41106 -38.30426 -35.27149 -34.78116 -33.87388 -32.19651 -31.65702 -29.65959 -27.18596 -25.93240 -23.47846 -23.16974 -21.45020 -20.77306 -20.38358 -19.15191 -18.18242 -17.81564 -17.19777 -16.94486 -16.42326 -16.04175 -15.75302 -15.33045 -15.20929 -14.94183 -14.40255 -13.95478 -13.57241 -13.56991 -13.21221 -13.02025 -12.94017 -12.85888 -12.78686 -12.57139 -12.32602 -12.24649 -11.99956 -11.93635 -11.58911 -11.13741 -10.98289 -10.96059 -10.60280 -10.10226 -9.89865 -9.03775 -7.97395 -5.26008 1.45775 1.46218 1.46601 1.52728 1.71381 2.24001 2.51959 3.09576 3.35845 3.36906 3.66594 3.73937 3.85081 3.86041 3.94471 4.19960 4.30921 4.36279 4.48086 4.61538 4.72824 4.79380 4.82006 4.89248 4.94804 4.97560 5.04313 5.14569 5.19153 5.31237 5.37941 5.52658 5.53702 5.72640 5.92786 6.25780 6.64866 6.73905 7.31853 7.33418 8.05447 8.28988 9.24820 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.019576 B = 0.004768 C = 0.004269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.991084 B = 5870.472025 C = 6557.164514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.195 4.195 3 C 0.172 3.828 4 C -0.131 4.131 5 O -0.573 6.573 6 C -0.160 4.160 7 C 0.506 3.494 8 O -0.575 6.575 9 N -0.706 5.706 10 C 0.162 3.838 11 C 0.100 3.900 12 N -0.698 5.698 13 C -0.232 4.232 14 H 0.068 0.932 15 C -0.066 4.066 16 N -0.964 5.964 17 Si 0.963 3.037 18 H -0.280 1.280 19 H -0.294 1.294 20 H -0.284 1.284 21 C -0.188 4.188 22 C -0.152 4.152 23 H 0.095 0.905 24 H 0.095 0.905 25 H 0.115 0.885 26 H 0.074 0.926 27 H 0.060 0.940 28 H 0.091 0.909 29 H 0.383 0.617 30 H 0.120 0.880 31 H 0.125 0.875 32 H 0.409 0.591 33 H 0.072 0.928 34 H 0.036 0.964 35 H 0.378 0.622 36 H 0.251 0.749 37 H 0.076 0.924 38 H 0.105 0.895 39 H 0.119 0.881 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.603 10.295 13.632 17.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.213 4.213 3 C 0.131 3.869 4 C -0.188 4.188 5 O -0.384 6.384 6 C -0.200 4.200 7 C 0.294 3.706 8 O -0.456 6.456 9 N -0.356 5.356 10 C 0.036 3.964 11 C 0.008 3.992 12 N -0.337 5.337 13 C -0.364 4.364 14 H 0.086 0.914 15 C -0.259 4.259 16 N -0.614 5.614 17 Si 0.793 3.207 18 H -0.206 1.206 19 H -0.220 1.220 20 H -0.210 1.210 21 C -0.228 4.228 22 C -0.189 4.189 23 H 0.113 0.887 24 H 0.113 0.887 25 H 0.133 0.867 26 H 0.092 0.908 27 H 0.079 0.921 28 H 0.109 0.891 29 H 0.235 0.765 30 H 0.138 0.862 31 H 0.143 0.857 32 H 0.244 0.756 33 H 0.090 0.910 34 H 0.054 0.946 35 H 0.211 0.789 36 H 0.060 0.940 37 H 0.094 0.906 38 H 0.124 0.876 39 H 0.137 0.863 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.274 10.236 14.177 17.634 hybrid contribution -0.035 -1.468 -1.418 2.041 sum -2.309 8.769 12.759 15.653 Atomic orbital electron populations 1.23675 0.96474 1.01557 0.98672 1.23512 0.96929 0.98849 1.01998 1.20014 0.88062 0.84243 0.94560 1.21733 0.98664 1.03833 0.94603 1.86389 1.51397 1.49442 1.51179 1.22465 0.99410 1.07072 0.91035 1.21171 0.88944 0.75175 0.85300 1.90589 1.16335 1.51893 1.86804 1.45909 1.11278 1.73092 1.05365 1.20888 0.92342 1.00037 0.83111 1.20389 0.99804 0.84577 0.94423 1.41805 1.05027 1.08209 1.78656 1.19361 0.91091 0.92455 1.33444 0.91410 1.25404 0.96394 1.01145 1.02945 1.69771 1.07061 1.30272 1.54345 0.85369 0.77475 0.79671 0.78202 1.20577 1.22012 1.21006 1.23379 0.98917 1.04019 0.96493 1.23134 0.96923 0.96006 1.02841 0.88691 0.88658 0.86734 0.90751 0.92061 0.89051 0.76454 0.86193 0.85717 0.75556 0.91024 0.94565 0.78912 0.93993 0.90582 0.87630 0.86326 0.89089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.37 12.66 67.78 0.86 -3.51 16 2 C -0.19 -4.77 7.48 25.64 0.19 -4.58 16 3 C 0.17 3.73 1.08 -11.54 -0.01 3.72 16 4 C -0.13 -2.13 8.83 71.98 0.64 -1.49 16 5 O -0.57 -14.68 11.93 -132.05 -1.58 -16.26 16 6 C -0.16 -3.14 4.98 29.85 0.15 -2.99 16 7 C 0.51 13.93 7.32 87.66 0.64 14.58 16 8 O -0.57 -19.08 11.94 13.91 0.17 -18.91 16 9 N -0.71 -19.99 5.50 -463.07 -2.55 -22.54 16 10 C 0.16 5.55 5.74 86.38 0.50 6.04 16 11 C 0.10 3.61 2.15 3.61 0.01 3.62 16 12 N -0.70 -32.73 5.49 -303.34 -1.67 -34.39 16 13 C -0.23 -12.41 9.55 84.03 0.80 -11.61 16 14 H 0.07 3.61 7.76 -2.91 -0.02 3.59 16 15 C -0.07 -3.69 5.50 84.86 0.47 -3.22 16 16 N -0.96 -56.82 13.06 21.65 0.28 -56.53 16 17 Si 0.96 45.70 29.55 68.60 2.03 47.73 16 18 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 19 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 20 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 21 C -0.19 -6.07 10.11 30.62 0.31 -5.76 16 22 C -0.15 -4.27 10.12 30.62 0.31 -3.96 16 23 H 0.09 2.56 6.41 -2.91 -0.02 2.54 16 24 H 0.10 2.34 8.06 -2.91 -0.02 2.32 16 25 H 0.11 2.61 8.06 -2.91 -0.02 2.59 16 26 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 28 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 29 H 0.38 10.36 5.70 -74.06 -0.42 9.94 16 30 H 0.12 1.95 8.14 -2.38 -0.02 1.93 16 31 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.41 10.25 8.48 -92.71 -0.79 9.46 16 33 H 0.07 2.28 7.93 -2.39 -0.02 2.26 16 34 H 0.04 1.51 7.71 -2.39 -0.02 1.49 16 35 H 0.38 18.91 8.04 -92.71 -0.75 18.17 16 36 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 37 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 38 H 0.11 2.91 8.07 -2.38 -0.02 2.89 16 39 H 0.12 2.64 8.14 -2.39 -0.02 2.62 16 40 H 0.09 2.64 8.14 -2.38 -0.02 2.62 16 Total: -1.00 -64.73 333.98 0.64 -64.09 By element: Atomic # 1 Polarization: 46.89 SS G_CDS: -0.90 Total: 45.98 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: 4.86 Total: -9.17 kcal Atomic # 7 Polarization: -109.53 SS G_CDS: -3.93 Total: -113.46 kcal Atomic # 8 Polarization: -33.76 SS G_CDS: -1.41 Total: -35.17 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -64.73 0.64 -64.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277050317.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.854 kcal (2) G-P(sol) polarization free energy of solvation -64.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds