Wall clock time and date at job start Mon Mar 30 2020 01:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46925 * 2 1 4 4 N 1.46500 * 109.46770 * 119.99936 * 2 1 3 5 5 C 1.46764 * 124.34486 * 120.00096 * 4 2 1 6 6 C 1.54696 * 105.53457 * 196.94303 * 5 4 2 7 7 C 1.54633 * 101.66503 * 334.74105 * 6 5 4 8 8 H 1.08998 * 110.48874 * 265.90266 * 7 6 5 9 9 N 1.46906 * 110.48193 * 143.39341 * 7 6 5 10 10 C 1.47484 * 110.99943 * 272.81172 * 9 7 6 11 11 C 1.53513 * 87.93068 * 221.29936 * 10 9 7 12 12 O 1.42904 * 114.17029 * 272.37669 * 11 10 9 13 13 C 1.50695 * 114.34351 * 139.68749 * 11 10 9 14 14 H 1.07999 * 119.99864 * 266.07719 * 13 11 10 15 15 C 1.37877 * 120.00390 * 86.07214 * 13 11 10 16 16 N 1.31517 * 119.99745 * 0.02562 * 15 13 11 17 17 Si 1.86795 * 120.00364 * 180.02562 * 15 13 11 18 18 H 1.48507 * 109.47144 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47378 * 120.00104 * 17 15 13 20 20 H 1.48503 * 109.47373 * 240.00437 * 17 15 13 21 21 C 1.47478 * 110.99781 * 176.84074 * 9 7 6 22 22 C 1.34413 * 124.35342 * 300.02614 * 4 2 1 23 23 O 1.21282 * 124.94083 * 359.61008 * 22 4 2 24 24 H 1.08999 * 109.46582 * 60.00188 * 1 2 3 25 25 H 1.09005 * 109.47141 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47190 * 299.99749 * 1 2 3 27 27 H 1.09003 * 109.46885 * 239.99816 * 2 1 3 28 28 H 1.08999 * 109.46663 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47456 * 300.00124 * 3 2 1 30 30 H 1.09004 * 109.46905 * 59.99707 * 3 2 1 31 31 H 1.08998 * 110.24855 * 316.03749 * 5 4 2 32 32 H 1.09006 * 110.24566 * 77.95012 * 5 4 2 33 33 H 1.08997 * 111.08371 * 216.62715 * 6 5 4 34 34 H 1.08994 * 110.94294 * 92.79865 * 6 5 4 35 35 H 1.09004 * 113.47530 * 336.06549 * 10 9 7 36 36 H 1.08999 * 113.47500 * 106.53067 * 10 9 7 37 37 H 0.96701 * 113.99855 * 273.84607 * 12 11 10 38 38 H 0.96994 * 119.99992 * 180.02562 * 16 15 13 39 39 H 1.08997 * 113.47799 * 253.47216 * 21 9 7 40 40 H 1.09003 * 113.47537 * 23.88206 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.8655 -1.8888 1.1727 6 6 2.7632 -2.4965 2.5916 7 6 2.4032 -1.2539 3.4387 8 1 3.3031 -0.8043 3.8581 9 7 1.4640 -1.6158 4.5088 10 6 0.0694 -1.5450 4.0343 11 6 -0.2971 -0.9029 5.3797 12 8 -0.6154 -1.8419 6.4088 13 6 -1.2881 0.2279 5.2788 14 1 -0.9388 1.2474 5.2079 15 6 -2.6408 -0.0389 5.2769 16 7 -3.0663 -1.2803 5.3637 17 14 -3.8692 1.3627 5.1512 18 1 -3.1401 2.6536 5.0650 19 1 -4.7023 1.1832 3.9351 20 1 -4.7416 1.3657 6.3529 21 6 1.1711 -0.4548 5.3698 22 6 1.7476 -0.3086 2.4562 23 8 1.0750 0.6534 2.7610 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8934 -0.5139 -0.8900 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 2.4969 -2.5970 0.4307 32 1 3.8980 -1.6165 0.9532 33 1 3.7168 -2.9202 2.9064 34 1 1.9712 -3.2438 2.6392 35 1 -0.0664 -0.8776 3.1833 36 1 -0.3873 -2.5228 3.8811 37 1 -1.5408 -2.1225 6.4127 38 1 -4.0179 -1.4681 5.3620 39 1 1.6481 -0.5086 6.3484 40 1 1.3302 0.5035 4.8755 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001307711392.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:14 Heat of formation + Delta-G solvation = -54.490102 kcal Electronic energy + Delta-G solvation = -22380.289718 eV Core-core repulsion = 19195.797259 eV Total energy + Delta-G solvation = -3184.492459 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.46198 -39.95537 -37.44865 -36.58902 -35.14149 -34.09515 -31.16647 -29.33184 -28.15568 -27.80131 -26.80562 -25.24860 -23.26138 -22.28531 -20.71298 -19.64221 -19.26680 -17.87322 -17.58094 -17.07496 -16.70894 -16.23458 -15.73127 -15.49251 -15.25208 -14.85025 -14.64150 -14.57234 -14.17945 -13.86588 -13.48842 -13.32315 -13.17868 -13.08717 -12.92801 -12.81283 -12.66111 -12.31578 -12.29135 -12.17772 -12.09818 -11.94066 -11.76542 -11.25683 -11.00075 -10.63828 -10.09176 -9.67106 -9.39097 -8.26941 -6.40659 1.34376 1.36014 1.49343 1.59263 2.07108 2.34796 2.92003 3.05324 3.49287 3.62679 3.84927 3.94612 4.08788 4.11172 4.15695 4.28879 4.30493 4.32247 4.50331 4.64469 4.68334 4.70604 4.78925 4.83982 4.86323 4.88906 5.05253 5.08369 5.14357 5.25514 5.29311 5.38525 5.43308 5.75514 5.80055 5.98554 6.15476 6.23845 6.62318 7.25498 7.29769 7.53874 8.79016 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.019610 B = 0.007667 C = 0.006174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.478288 B = 3651.237878 C = 4533.855290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.150 3.850 3 C -0.160 4.160 4 N -0.617 5.617 5 C 0.104 3.896 6 C -0.109 4.109 7 C 0.000 4.000 8 H 0.121 0.879 9 N -0.444 5.444 10 C -0.017 4.017 11 C 0.224 3.776 12 O -0.583 6.583 13 C -0.538 4.538 14 H 0.051 0.949 15 C 0.024 3.976 16 N -0.921 5.921 17 Si 0.963 3.037 18 H -0.275 1.275 19 H -0.276 1.276 20 H -0.270 1.270 21 C 0.008 3.992 22 C 0.487 3.513 23 O -0.548 6.548 24 H 0.088 0.912 25 H 0.050 0.950 26 H 0.029 0.971 27 H 0.126 0.874 28 H 0.067 0.933 29 H 0.085 0.915 30 H 0.033 0.967 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.122 0.878 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.043 0.957 37 H 0.384 0.616 38 H 0.274 0.726 39 H 0.069 0.931 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.252 -1.435 -13.671 18.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.049 3.951 3 C -0.218 4.218 4 N -0.352 5.352 5 C -0.018 4.018 6 C -0.147 4.147 7 C -0.113 4.113 8 H 0.138 0.862 9 N -0.166 5.166 10 C -0.146 4.146 11 C 0.183 3.817 12 O -0.395 6.395 13 C -0.577 4.577 14 H 0.070 0.930 15 C -0.174 4.174 16 N -0.564 5.564 17 Si 0.788 3.212 18 H -0.200 1.200 19 H -0.202 1.202 20 H -0.195 1.195 21 C -0.121 4.121 22 C 0.274 3.726 23 O -0.426 6.426 24 H 0.106 0.894 25 H 0.069 0.931 26 H 0.048 0.952 27 H 0.143 0.857 28 H 0.086 0.914 29 H 0.104 0.896 30 H 0.052 0.948 31 H 0.118 0.882 32 H 0.121 0.879 33 H 0.141 0.859 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.061 0.939 37 H 0.238 0.762 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 12.654 -1.567 -13.179 18.338 hybrid contribution -1.870 1.324 -0.265 2.307 sum 10.784 -0.243 -13.445 17.237 Atomic orbital electron populations 1.22169 0.96295 1.01746 1.02301 1.21121 0.93290 0.93608 0.87113 1.22110 1.01555 0.95732 1.02407 1.48683 1.50948 1.30181 1.05394 1.22416 0.95893 0.85676 0.97807 1.22640 1.04455 0.95030 0.92546 1.23325 0.98411 0.97004 0.92522 0.86171 1.69118 1.04103 1.31931 1.11421 1.24701 0.89222 0.99083 1.01617 1.19580 0.91129 0.86693 0.84320 1.85995 1.35001 1.63691 1.54785 1.21709 0.92052 0.93527 1.50386 0.93024 1.25761 0.99906 0.98424 0.93349 1.69360 1.16043 1.19348 1.51601 0.85429 0.78445 0.79187 0.78099 1.19997 1.20175 1.19498 1.24054 0.96455 0.94087 0.97510 1.21853 0.80043 0.85135 0.85595 1.90746 1.39884 1.30285 1.81703 0.89355 0.93102 0.95173 0.85670 0.91432 0.89612 0.94776 0.88232 0.87929 0.85925 0.91223 0.90919 0.93867 0.76173 0.91631 0.91239 0.90136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.65 9.20 71.98 0.66 -3.99 16 2 C 0.15 3.41 3.47 44.99 0.16 3.57 16 3 C -0.16 -3.64 9.20 71.98 0.66 -2.97 16 4 N -0.62 -16.25 2.83 -793.60 -2.25 -18.49 16 5 C 0.10 1.81 7.31 86.91 0.63 2.45 16 6 C -0.11 -2.47 6.86 31.73 0.22 -2.25 16 7 C 0.00 0.00 3.05 44.91 0.14 0.14 16 8 H 0.12 3.55 8.14 -2.39 -0.02 3.53 16 9 N -0.44 -19.22 6.37 -902.77 -5.75 -24.97 16 10 C -0.02 -0.86 6.72 83.58 0.56 -0.30 16 11 C 0.22 12.50 1.56 -11.20 -0.02 12.48 16 12 O -0.58 -34.11 13.53 -148.98 -2.02 -36.13 16 13 C -0.54 -32.02 8.69 25.60 0.22 -31.80 16 14 H 0.05 3.15 7.81 -2.91 -0.02 3.13 16 15 C 0.02 1.38 5.39 84.65 0.46 1.84 16 16 N -0.92 -52.81 11.02 21.45 0.24 -52.57 16 17 Si 0.96 45.49 29.54 68.60 2.03 47.52 16 18 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 19 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 20 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 21 C 0.01 0.37 6.89 83.58 0.58 0.95 16 22 C 0.49 17.58 5.08 87.90 0.45 18.03 16 23 O -0.55 -25.09 11.25 -3.04 -0.03 -25.12 16 24 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 25 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 26 H 0.03 1.13 6.79 -2.39 -0.02 1.11 16 27 H 0.13 1.83 8.07 -2.39 -0.02 1.81 16 28 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.03 1.06 6.78 -2.38 -0.02 1.04 16 31 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.10 1.17 8.14 -2.38 -0.02 1.16 16 33 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.07 1.85 8.09 -2.39 -0.02 1.83 16 35 H 0.07 3.85 4.60 -2.38 -0.01 3.84 16 36 H 0.04 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.38 22.86 6.33 -74.06 -0.47 22.39 16 38 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 39 H 0.07 3.27 8.14 -2.39 -0.02 3.25 16 40 H 0.08 4.02 5.92 -2.39 -0.01 4.00 16 Total: -1.00 -72.24 313.40 -2.50 -74.74 By element: Atomic # 1 Polarization: 36.32 SS G_CDS: 0.57 Total: 36.89 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: 4.72 Total: -1.87 kcal Atomic # 7 Polarization: -88.28 SS G_CDS: -7.76 Total: -96.03 kcal Atomic # 8 Polarization: -59.20 SS G_CDS: -2.05 Total: -61.25 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -72.24 -2.50 -74.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307711392.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.247 kcal (2) G-P(sol) polarization free energy of solvation -72.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds