Wall clock time and date at job start Mon Mar 30 2020 01:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47205 * 2 1 4 4 N 1.46509 * 109.46768 * 119.99414 * 2 1 3 5 5 C 1.46766 * 124.34673 * 120.00297 * 4 2 1 6 6 C 1.54477 * 105.47147 * 162.98171 * 5 4 2 7 7 C 1.54623 * 101.76692 * 25.41541 * 6 5 4 8 8 H 1.08998 * 110.49181 * 94.01052 * 7 6 5 9 9 N 1.46898 * 110.48899 * 216.52359 * 7 6 5 10 10 C 1.47957 * 111.00658 * 188.15819 * 9 7 6 11 11 C 1.53928 * 86.18182 * 137.57960 * 10 9 7 12 12 O 1.42903 * 113.73330 * 90.64449 * 11 10 9 13 13 C 1.50704 * 113.73481 * 221.81443 * 11 10 9 14 14 H 1.07996 * 120.00091 * 358.10281 * 13 11 10 15 15 C 1.37881 * 119.99858 * 178.10379 * 13 11 10 16 16 N 1.31518 * 120.00106 * 0.02562 * 15 13 11 17 17 Si 1.86796 * 119.99760 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47230 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47082 * 119.99768 * 17 15 13 20 20 H 1.48504 * 109.47324 * 240.00006 * 17 15 13 21 21 C 1.47965 * 111.00104 * 287.52145 * 9 7 6 22 22 C 1.34648 * 124.31718 * 300.12485 * 4 2 1 23 23 O 1.21286 * 125.06835 * 0.41157 * 22 4 2 24 24 H 1.09007 * 109.46947 * 300.00473 * 1 2 3 25 25 H 1.08995 * 109.46860 * 60.00018 * 1 2 3 26 26 H 1.08993 * 109.47125 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47165 * 239.99171 * 2 1 3 28 28 H 1.09003 * 109.46456 * 299.99432 * 3 2 1 29 29 H 1.08992 * 109.47227 * 59.99483 * 3 2 1 30 30 H 1.09001 * 109.46727 * 180.02562 * 3 2 1 31 31 H 1.09001 * 110.24763 * 43.98061 * 5 4 2 32 32 H 1.08999 * 110.31484 * 282.02047 * 5 4 2 33 33 H 1.09000 * 110.96912 * 267.29266 * 6 5 4 34 34 H 1.09003 * 110.99824 * 143.54923 * 6 5 4 35 35 H 1.09005 * 113.75470 * 23.26222 * 10 9 7 36 36 H 1.08998 * 113.76285 * 251.90534 * 10 9 7 37 37 H 0.96700 * 114.00311 * 179.97438 * 12 11 10 38 38 H 0.96998 * 120.00013 * 179.97438 * 16 15 13 39 39 H 1.09001 * 113.75882 * 108.09403 * 21 9 7 40 40 H 1.08997 * 113.75163 * 336.72977 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.8656 -1.8887 1.1730 6 6 3.4723 -1.9921 2.5899 7 6 2.4203 -1.2414 3.4389 8 1 1.6980 -1.9419 3.8581 9 7 3.0741 -0.4768 4.5093 10 6 2.0755 0.0870 5.4442 11 6 3.0358 -0.3436 6.5675 12 8 3.9817 0.6633 6.9330 13 6 2.3423 -0.9573 7.7564 14 1 1.2650 -1.0308 7.7745 15 6 3.0832 -1.4248 8.8211 16 7 4.3951 -1.3348 8.7993 17 14 2.2236 -2.1860 10.2945 18 1 0.7550 -2.1684 10.0744 19 1 2.6822 -3.5880 10.4653 20 1 2.5500 -1.4062 11.5155 21 6 3.5857 -1.3762 5.5670 22 6 1.7451 -0.3083 2.4582 23 8 1.0598 0.6443 2.7648 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.6767 1.9562 -0.8901 29 1 1.6767 1.9564 0.8899 30 1 3.1301 1.4424 -0.0005 31 1 3.6564 -1.7771 0.4312 32 1 2.2658 -2.7721 0.9541 33 1 4.4401 -1.4928 2.6371 34 1 3.5566 -3.0325 2.9037 35 1 1.1263 -0.4488 5.4485 36 1 1.9550 1.1670 5.3593 37 1 4.5868 0.3969 7.6388 38 1 4.9163 -1.6634 9.5485 39 1 4.6720 -1.4652 5.5801 40 1 3.0782 -2.3400 5.6071 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001307711403.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:17 Heat of formation + Delta-G solvation = -43.895236 kcal Electronic energy + Delta-G solvation = -21592.603053 eV Core-core repulsion = 18408.570022 eV Total energy + Delta-G solvation = -3184.033031 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.56596 -38.53154 -36.16872 -35.08341 -33.62971 -32.04914 -29.80352 -27.91988 -27.22196 -26.16877 -25.04887 -23.52418 -22.16224 -20.94961 -18.66288 -18.58528 -17.28093 -16.69992 -16.15600 -15.22597 -15.08099 -14.69349 -14.38905 -13.91486 -13.74346 -13.55556 -13.36569 -13.12749 -12.81415 -12.41906 -12.21861 -12.05088 -11.86101 -11.76622 -11.44275 -11.31832 -11.22240 -11.13985 -10.96045 -10.88501 -10.47899 -10.33934 -10.05647 -9.32057 -9.10451 -8.64158 -8.57659 -8.19308 -7.81300 -6.24234 -4.34074 2.86469 3.07781 3.19617 3.28725 3.33272 4.27281 4.45489 4.62557 4.76317 4.89672 4.97502 5.01375 5.11476 5.20165 5.30731 5.43580 5.55909 5.61742 5.65730 5.73601 5.83425 5.90954 5.99184 6.04706 6.17171 6.25398 6.28859 6.35458 6.43237 6.74707 6.85882 7.05124 7.16894 7.28699 7.39760 7.78072 7.94726 8.03900 8.49383 8.68845 9.36164 9.66662 10.81414 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.035370 B = 0.004671 C = 0.004621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.452436 B = 5992.876986 C = 6058.362588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.155 3.845 3 C -0.167 4.167 4 N -0.624 5.624 5 C 0.108 3.892 6 C -0.122 4.122 7 C 0.013 3.987 8 H 0.077 0.923 9 N -0.462 5.462 10 C 0.025 3.975 11 C 0.241 3.759 12 O -0.571 6.571 13 C -0.536 4.536 14 H 0.066 0.934 15 C 0.071 3.929 16 N -0.898 5.898 17 Si 0.902 3.098 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.281 1.281 21 C -0.009 4.009 22 C 0.535 3.465 23 O -0.516 6.516 24 H 0.072 0.928 25 H 0.064 0.936 26 H 0.054 0.946 27 H 0.083 0.917 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.064 0.936 36 H 0.077 0.923 37 H 0.387 0.613 38 H 0.270 0.730 39 H 0.075 0.925 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.312 -3.265 -16.094 16.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.052 3.948 3 C -0.225 4.225 4 N -0.360 5.360 5 C -0.016 4.016 6 C -0.160 4.160 7 C -0.100 4.100 8 H 0.095 0.905 9 N -0.186 5.186 10 C -0.104 4.104 11 C 0.199 3.801 12 O -0.381 6.381 13 C -0.574 4.574 14 H 0.084 0.916 15 C -0.131 4.131 16 N -0.538 5.538 17 Si 0.729 3.271 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.207 1.207 21 C -0.137 4.137 22 C 0.322 3.678 23 O -0.390 6.390 24 H 0.092 0.908 25 H 0.083 0.917 26 H 0.073 0.927 27 H 0.101 0.899 28 H 0.081 0.919 29 H 0.092 0.908 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.110 0.890 34 H 0.104 0.896 35 H 0.082 0.918 36 H 0.096 0.904 37 H 0.241 0.759 38 H 0.080 0.920 39 H 0.093 0.907 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.416 -1.987 -16.719 17.010 hybrid contribution -0.630 -1.577 1.401 2.201 sum -3.046 -3.564 -15.319 16.020 Atomic orbital electron populations 1.22188 0.95010 1.02138 1.03235 1.20864 0.94258 0.93159 0.86471 1.22178 1.01359 0.95881 1.03129 1.48463 1.52261 1.29337 1.05968 1.22037 0.93666 0.87320 0.98576 1.22614 0.99553 1.01366 0.92499 1.22953 0.96593 0.95346 0.95098 0.90515 1.68682 1.22854 1.22091 1.04936 1.24028 0.94226 1.00718 0.91413 1.19819 0.85870 0.84244 0.90119 1.86068 1.49817 1.42063 1.60184 1.21696 0.93972 1.39163 1.02571 0.91590 1.25057 0.94869 0.94746 0.98421 1.69441 1.04788 1.47364 1.32232 0.86382 0.79892 0.78739 0.82082 1.19597 1.20805 1.20671 1.24717 1.00561 0.96526 0.91944 1.20752 0.79479 0.84393 0.83187 1.90653 1.38800 1.28380 1.81167 0.90850 0.91743 0.92710 0.89897 0.91851 0.90794 0.92478 0.90703 0.91563 0.89036 0.89578 0.91768 0.90448 0.75905 0.92025 0.90661 0.92187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.86 9.20 37.16 0.34 -1.52 16 2 C 0.15 1.75 3.48 -67.92 -0.24 1.52 16 3 C -0.17 -1.99 9.20 37.16 0.34 -1.65 16 4 N -0.62 -8.45 2.84 -164.77 -0.47 -8.92 16 5 C 0.11 1.15 7.30 -3.12 -0.02 1.12 16 6 C -0.12 -1.61 6.46 -25.10 -0.16 -1.77 16 7 C 0.01 0.22 2.20 -67.73 -0.15 0.07 16 8 H 0.08 1.34 7.77 -51.93 -0.40 0.94 16 9 N -0.46 -9.92 5.97 -230.29 -1.38 -11.29 16 10 C 0.02 0.58 6.24 -2.77 -0.02 0.56 16 11 C 0.24 6.23 1.41 -90.84 -0.13 6.11 16 12 O -0.57 -15.78 13.50 -35.23 -0.48 -16.26 16 13 C -0.54 -14.48 8.62 -34.44 -0.30 -14.78 16 14 H 0.07 1.77 7.81 -52.49 -0.41 1.36 16 15 C 0.07 1.87 5.39 -17.82 -0.10 1.78 16 16 N -0.90 -24.01 11.19 55.43 0.62 -23.39 16 17 Si 0.90 20.46 29.54 -169.99 -5.02 15.43 16 18 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 19 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 21 C -0.01 -0.20 6.99 -2.77 -0.02 -0.22 16 22 C 0.53 9.44 7.02 -10.76 -0.08 9.36 16 23 O -0.52 -10.75 14.10 5.55 0.08 -10.67 16 24 H 0.07 1.04 6.77 -51.93 -0.35 0.68 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.08 0.72 8.07 -51.93 -0.42 0.30 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.07 1.12 6.81 -51.93 -0.35 0.77 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.09 1.29 8.09 -51.93 -0.42 0.87 16 34 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.06 1.48 7.75 -51.93 -0.40 1.07 16 36 H 0.08 1.93 8.14 -51.93 -0.42 1.51 16 37 H 0.39 10.74 6.56 45.56 0.30 11.04 16 38 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 39 H 0.07 1.76 8.14 -51.93 -0.42 1.34 16 40 H 0.06 1.32 7.77 -51.93 -0.40 0.92 16 LS Contribution 320.94 15.07 4.84 4.84 Total: -1.00 -30.20 320.94 -8.13 -38.33 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -5.80 Total: 11.33 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -0.52 Total: 0.59 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: -1.22 Total: -43.60 kcal Atomic # 8 Polarization: -26.53 SS G_CDS: -0.40 Total: -26.92 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.20 -8.13 -38.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307711403.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.566 kcal (2) G-P(sol) polarization free energy of solvation -30.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds