Wall clock time and date at job start Mon Mar 30 2020 01:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47205 * 2 1 4 4 N 1.46509 * 109.46768 * 119.99414 * 2 1 3 5 5 C 1.46766 * 124.34673 * 120.00297 * 4 2 1 6 6 C 1.54477 * 105.47147 * 162.98171 * 5 4 2 7 7 C 1.54623 * 101.76692 * 25.41541 * 6 5 4 8 8 H 1.08998 * 110.49181 * 94.01052 * 7 6 5 9 9 N 1.46898 * 110.48899 * 216.52359 * 7 6 5 10 10 C 1.47957 * 111.00658 * 188.15819 * 9 7 6 11 11 C 1.53928 * 86.18182 * 137.57960 * 10 9 7 12 12 O 1.42903 * 113.73330 * 90.64449 * 11 10 9 13 13 C 1.50704 * 113.73481 * 221.81443 * 11 10 9 14 14 H 1.07996 * 120.00091 * 358.10281 * 13 11 10 15 15 C 1.37881 * 119.99858 * 178.10379 * 13 11 10 16 16 N 1.31518 * 120.00106 * 0.02562 * 15 13 11 17 17 Si 1.86796 * 119.99760 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47230 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47082 * 119.99768 * 17 15 13 20 20 H 1.48504 * 109.47324 * 240.00006 * 17 15 13 21 21 C 1.47965 * 111.00104 * 287.52145 * 9 7 6 22 22 C 1.34648 * 124.31718 * 300.12485 * 4 2 1 23 23 O 1.21286 * 125.06835 * 0.41157 * 22 4 2 24 24 H 1.09007 * 109.46947 * 300.00473 * 1 2 3 25 25 H 1.08995 * 109.46860 * 60.00018 * 1 2 3 26 26 H 1.08993 * 109.47125 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47165 * 239.99171 * 2 1 3 28 28 H 1.09003 * 109.46456 * 299.99432 * 3 2 1 29 29 H 1.08992 * 109.47227 * 59.99483 * 3 2 1 30 30 H 1.09001 * 109.46727 * 180.02562 * 3 2 1 31 31 H 1.09001 * 110.24763 * 43.98061 * 5 4 2 32 32 H 1.08999 * 110.31484 * 282.02047 * 5 4 2 33 33 H 1.09000 * 110.96912 * 267.29266 * 6 5 4 34 34 H 1.09003 * 110.99824 * 143.54923 * 6 5 4 35 35 H 1.09005 * 113.75470 * 23.26222 * 10 9 7 36 36 H 1.08998 * 113.76285 * 251.90534 * 10 9 7 37 37 H 0.96700 * 114.00311 * 179.97438 * 12 11 10 38 38 H 0.96998 * 120.00013 * 179.97438 * 16 15 13 39 39 H 1.09001 * 113.75882 * 108.09403 * 21 9 7 40 40 H 1.08997 * 113.75163 * 336.72977 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.8656 -1.8887 1.1730 6 6 3.4723 -1.9921 2.5899 7 6 2.4203 -1.2414 3.4389 8 1 1.6980 -1.9419 3.8581 9 7 3.0741 -0.4768 4.5093 10 6 2.0755 0.0870 5.4442 11 6 3.0358 -0.3436 6.5675 12 8 3.9817 0.6633 6.9330 13 6 2.3423 -0.9573 7.7564 14 1 1.2650 -1.0308 7.7745 15 6 3.0832 -1.4248 8.8211 16 7 4.3951 -1.3348 8.7993 17 14 2.2236 -2.1860 10.2945 18 1 0.7550 -2.1684 10.0744 19 1 2.6822 -3.5880 10.4653 20 1 2.5500 -1.4062 11.5155 21 6 3.5857 -1.3762 5.5670 22 6 1.7451 -0.3083 2.4582 23 8 1.0598 0.6443 2.7648 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.6767 1.9562 -0.8901 29 1 1.6767 1.9564 0.8899 30 1 3.1301 1.4424 -0.0005 31 1 3.6564 -1.7771 0.4312 32 1 2.2658 -2.7721 0.9541 33 1 4.4401 -1.4928 2.6371 34 1 3.5566 -3.0325 2.9037 35 1 1.1263 -0.4488 5.4485 36 1 1.9550 1.1670 5.3593 37 1 4.5868 0.3969 7.6388 38 1 4.9163 -1.6634 9.5485 39 1 4.6720 -1.4652 5.5801 40 1 3.0782 -2.3400 5.6071 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001307711403.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:17 Heat of formation + Delta-G solvation = -67.649852 kcal Electronic energy + Delta-G solvation = -21593.633130 eV Core-core repulsion = 18408.570022 eV Total energy + Delta-G solvation = -3185.063108 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.90494 -40.21842 -37.45789 -36.57832 -35.16426 -34.13330 -31.12351 -29.30841 -28.12831 -27.88450 -26.89461 -25.15371 -23.18601 -22.26146 -20.56437 -19.90907 -19.18065 -17.89651 -17.49116 -17.13138 -16.55799 -16.23697 -15.77867 -15.55737 -14.97838 -14.87677 -14.61115 -14.57763 -14.16502 -13.80273 -13.66942 -13.53178 -13.39636 -13.00108 -12.90273 -12.83953 -12.72970 -12.33624 -12.28613 -12.25294 -12.09489 -12.05144 -11.84773 -11.19470 -10.65721 -10.50250 -10.16046 -9.68301 -9.61818 -8.25383 -6.43826 1.40272 1.43902 1.53185 1.55421 2.02513 2.37257 2.94877 3.12476 3.29337 3.62669 3.86017 3.96059 4.07241 4.09133 4.16746 4.26233 4.30762 4.40028 4.53190 4.56239 4.65237 4.70613 4.80159 4.85564 4.88970 4.89452 4.96679 5.12638 5.15153 5.23671 5.30333 5.38171 5.39007 5.72678 5.77062 5.97907 6.12886 6.24060 6.60864 7.22383 7.29291 7.51351 8.79776 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.035370 B = 0.004671 C = 0.004621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.452436 B = 5992.876986 C = 6058.362588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.148 3.852 3 C -0.164 4.164 4 N -0.615 5.615 5 C 0.109 3.891 6 C -0.115 4.115 7 C 0.002 3.998 8 H 0.076 0.924 9 N -0.465 5.465 10 C 0.033 3.967 11 C 0.216 3.784 12 O -0.585 6.585 13 C -0.563 4.563 14 H 0.058 0.942 15 C 0.032 3.968 16 N -0.915 5.915 17 Si 0.967 3.033 18 H -0.272 1.272 19 H -0.271 1.271 20 H -0.278 1.278 21 C 0.012 3.988 22 C 0.523 3.477 23 O -0.561 6.561 24 H 0.034 0.966 25 H 0.089 0.911 26 H 0.062 0.938 27 H 0.127 0.873 28 H 0.090 0.910 29 H 0.031 0.969 30 H 0.055 0.945 31 H 0.107 0.893 32 H 0.097 0.903 33 H 0.081 0.919 34 H 0.109 0.891 35 H 0.065 0.935 36 H 0.053 0.947 37 H 0.383 0.617 38 H 0.275 0.725 39 H 0.068 0.932 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.125 -5.363 -18.112 19.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.047 3.953 3 C -0.222 4.222 4 N -0.350 5.350 5 C -0.013 4.013 6 C -0.153 4.153 7 C -0.111 4.111 8 H 0.094 0.906 9 N -0.189 5.189 10 C -0.096 4.096 11 C 0.175 3.825 12 O -0.396 6.396 13 C -0.601 4.601 14 H 0.076 0.924 15 C -0.168 4.168 16 N -0.555 5.555 17 Si 0.792 3.208 18 H -0.197 1.197 19 H -0.197 1.197 20 H -0.204 1.204 21 C -0.117 4.117 22 C 0.310 3.690 23 O -0.439 6.439 24 H 0.053 0.947 25 H 0.108 0.892 26 H 0.081 0.919 27 H 0.145 0.855 28 H 0.109 0.891 29 H 0.050 0.950 30 H 0.075 0.925 31 H 0.126 0.874 32 H 0.115 0.885 33 H 0.100 0.900 34 H 0.127 0.873 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.236 0.764 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.208 -4.111 -18.789 19.360 hybrid contribution -0.681 -0.889 1.962 2.259 sum -2.889 -5.000 -16.827 17.790 Atomic orbital electron populations 1.22146 0.94997 1.02424 1.02549 1.21191 0.94377 0.92958 0.86769 1.22149 1.01221 0.96467 1.02396 1.48605 1.51423 1.29784 1.05179 1.22319 0.94456 0.87042 0.97477 1.22655 0.97667 1.01752 0.93242 1.23114 0.98061 0.95436 0.94444 0.90622 1.68527 1.22559 1.22567 1.05247 1.23818 0.94453 0.99392 0.91895 1.20186 0.86366 0.85043 0.90883 1.86052 1.50173 1.43283 1.60092 1.21864 0.93830 1.40442 1.03978 0.92352 1.25760 0.95519 0.94845 1.00666 1.69501 1.05708 1.47283 1.33031 0.85378 0.78662 0.78225 0.78557 1.19666 1.19668 1.20391 1.24396 0.99912 0.96088 0.91311 1.20852 0.79358 0.83982 0.84794 1.90631 1.40862 1.30291 1.82161 0.94725 0.89229 0.91894 0.85523 0.89128 0.94967 0.92547 0.87441 0.88513 0.90030 0.87292 0.91705 0.92795 0.76403 0.91515 0.91389 0.91479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.32 9.20 71.98 0.66 -2.66 16 2 C 0.15 2.92 3.48 44.99 0.16 3.08 16 3 C -0.16 -3.68 9.20 71.98 0.66 -3.02 16 4 N -0.62 -15.25 2.84 -793.67 -2.25 -17.50 16 5 C 0.11 1.86 7.30 86.83 0.63 2.49 16 6 C -0.12 -2.73 6.46 31.65 0.20 -2.52 16 7 C 0.00 0.07 2.20 44.91 0.10 0.16 16 8 H 0.08 2.61 7.77 -2.39 -0.02 2.60 16 9 N -0.47 -20.37 5.97 -885.73 -5.29 -25.66 16 10 C 0.03 1.65 6.24 86.40 0.54 2.19 16 11 C 0.22 11.51 1.41 -10.90 -0.02 11.50 16 12 O -0.59 -33.54 13.50 -148.98 -2.01 -35.55 16 13 C -0.56 -31.06 8.62 25.60 0.22 -30.84 16 14 H 0.06 3.21 7.81 -2.91 -0.02 3.19 16 15 C 0.03 1.71 5.39 84.65 0.46 2.17 16 16 N -0.91 -49.08 11.19 21.45 0.24 -48.84 16 17 Si 0.97 41.85 29.54 68.60 2.03 43.88 16 18 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 19 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 20 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 21 C 0.01 0.55 6.99 86.40 0.60 1.15 16 22 C 0.52 18.46 7.02 87.86 0.62 19.08 16 23 O -0.56 -24.47 14.10 -3.05 -0.04 -24.52 16 24 H 0.03 0.98 6.77 -2.38 -0.02 0.96 16 25 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.13 1.50 8.07 -2.39 -0.02 1.48 16 28 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.03 0.99 6.81 -2.39 -0.02 0.97 16 30 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.08 2.13 8.09 -2.39 -0.02 2.11 16 34 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.06 3.13 7.75 -2.38 -0.02 3.11 16 36 H 0.05 2.87 8.14 -2.39 -0.02 2.85 16 37 H 0.38 21.95 6.56 -74.06 -0.49 21.46 16 38 H 0.28 13.80 8.31 -92.71 -0.77 13.03 16 39 H 0.07 3.20 8.14 -2.39 -0.02 3.18 16 40 H 0.07 2.95 7.77 -2.39 -0.02 2.93 16 Total: -1.00 -68.66 320.94 -1.95 -70.61 By element: Atomic # 1 Polarization: 34.25 SS G_CDS: 0.54 Total: 34.79 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: 4.84 Total: 2.79 kcal Atomic # 7 Polarization: -84.70 SS G_CDS: -7.30 Total: -92.00 kcal Atomic # 8 Polarization: -58.02 SS G_CDS: -2.05 Total: -60.07 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Total: -68.66 -1.95 -70.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307711403.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.962 kcal (2) G-P(sol) polarization free energy of solvation -68.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds