Wall clock time and date at job start Mon Mar 30 2020 01:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47537 * 2 1 4 4 H 1.09003 * 109.47022 * 55.00041 * 3 2 1 5 5 C 1.52998 * 109.47443 * 175.00128 * 3 2 1 6 6 N 1.46500 * 109.47304 * 174.99839 * 5 3 2 7 7 C 1.34776 * 119.99630 * 179.97438 * 6 5 3 8 8 O 1.21734 * 120.00316 * 0.02562 * 7 6 5 9 9 C 1.41805 * 119.99558 * 179.97438 * 7 6 5 10 10 C 1.33454 * 118.78483 * 179.73215 * 9 7 6 11 11 O 1.34347 * 123.07796 * 180.11175 * 10 9 7 12 12 C 1.45351 * 117.54538 * 344.22506 * 11 10 9 13 13 C 1.53476 * 108.26603 * 47.22456 * 12 11 10 14 14 C 1.50420 * 118.78629 * 0.02562 * 9 7 6 15 15 N 1.46498 * 109.47120 * 295.00185 * 3 2 1 16 16 C 1.36935 * 120.00239 * 84.99640 * 15 3 2 17 17 H 1.08004 * 120.00069 * 0.02562 * 16 15 3 18 18 C 1.38811 * 120.00368 * 180.02562 * 16 15 3 19 19 N 1.31624 * 119.99540 * 359.72375 * 18 16 15 20 20 Si 1.86800 * 120.00451 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46758 * 269.72270 * 20 18 16 22 22 H 1.48499 * 109.47026 * 29.72118 * 20 18 16 23 23 H 1.48496 * 109.47474 * 149.72153 * 20 18 16 24 24 H 1.09004 * 109.47282 * 59.99917 * 1 2 3 25 25 H 1.08994 * 109.47622 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.46688 * 300.00429 * 1 2 3 27 27 H 1.08995 * 109.47015 * 239.99503 * 2 1 3 28 28 H 1.08998 * 109.46879 * 119.99905 * 2 1 3 29 29 H 1.09008 * 109.46958 * 295.00113 * 5 3 2 30 30 H 1.08993 * 109.47007 * 54.99576 * 5 3 2 31 31 H 0.96999 * 119.99793 * 0.02562 * 6 5 3 32 32 H 1.08000 * 118.45972 * 0.39837 * 10 9 7 33 33 H 1.08998 * 109.70493 * 287.52605 * 12 11 10 34 34 H 1.09003 * 109.73621 * 166.93823 * 12 11 10 35 35 H 1.09004 * 109.70464 * 177.60956 * 13 12 11 36 36 H 1.09000 * 109.70978 * 56.98896 * 13 12 11 37 37 H 1.08996 * 109.45235 * 282.35913 * 14 9 7 38 38 H 1.09006 * 109.45363 * 42.31632 * 14 9 7 39 39 H 0.97004 * 119.99747 * 265.00379 * 15 3 2 40 40 H 0.97000 * 120.00481 * 0.27542 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4442 0.1257 6 7 4.0632 2.8167 0.0059 7 6 5.3858 3.0628 0.0867 8 8 6.1664 2.1447 0.2589 9 6 5.8682 4.3912 -0.0298 10 6 7.1820 4.6079 0.0593 11 8 7.7316 5.8300 -0.0364 12 6 6.9103 6.8952 -0.5873 13 6 5.5370 6.8462 0.0962 14 6 4.8795 5.5047 -0.2426 15 7 1.6525 2.0974 -1.2518 16 6 0.4158 2.6735 -1.3688 17 1 -0.2739 2.6453 -0.5381 18 6 0.0483 3.2936 -2.5551 19 7 0.8908 3.3328 -3.5656 20 14 -1.6386 4.0801 -2.7145 21 1 -2.6040 3.0791 -3.2352 22 1 -2.0901 4.5572 -1.3827 23 1 -1.5625 5.2290 -3.6522 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8500 1.0375 1.0961 30 1 3.9954 0.8310 -0.6659 31 1 3.4411 3.5482 -0.1309 32 1 7.8343 3.7606 0.2110 33 1 6.7919 6.7500 -1.6610 34 1 7.3816 7.8595 -0.3967 35 1 4.9150 7.6632 -0.2697 36 1 5.6604 6.9326 1.1757 37 1 4.5583 5.5108 -1.2841 38 1 4.0149 5.3509 0.4032 39 1 2.2720 2.1230 -1.9978 40 1 1.7669 2.9248 -3.4827 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318508795.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:51 Heat of formation + Delta-G solvation = -83.435022 kcal Electronic energy + Delta-G solvation = -20989.849244 eV Core-core repulsion = 17804.101639 eV Total energy + Delta-G solvation = -3185.747605 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.66779 -40.20335 -38.42654 -35.63487 -35.07125 -34.17682 -32.62221 -31.32967 -29.38280 -26.75199 -25.92297 -25.02607 -23.78731 -22.15175 -21.67108 -19.87722 -19.41824 -18.93200 -17.63389 -16.93300 -16.82832 -16.49367 -16.25824 -15.83037 -15.59927 -15.42990 -15.02236 -14.68903 -14.44886 -14.29970 -14.06103 -13.77058 -13.48938 -13.19637 -12.75857 -12.58157 -12.33590 -12.09420 -11.97143 -11.85011 -11.82954 -11.66839 -11.55792 -11.18723 -11.00342 -10.83753 -10.13262 -9.51119 -9.07047 -8.26705 -5.21891 0.33664 1.61892 1.70533 1.83970 2.11623 2.34661 2.47220 2.75180 3.49108 3.67335 3.71349 3.73893 3.85823 3.90458 4.16757 4.23901 4.27074 4.33306 4.39633 4.48087 4.52816 4.68617 4.69486 4.77046 4.91336 5.00397 5.05082 5.06369 5.13365 5.14311 5.18598 5.42115 5.51998 5.64360 5.73054 6.15892 6.58024 6.59711 7.14675 7.23585 8.04971 8.18468 9.23566 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.016925 B = 0.005581 C = 0.004428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.952633 B = 5015.732318 C = 6321.940796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.129 4.129 3 C 0.171 3.829 4 H 0.055 0.945 5 C 0.122 3.878 6 N -0.713 5.713 7 C 0.563 3.437 8 O -0.606 6.606 9 C -0.330 4.330 10 C 0.172 3.828 11 O -0.314 6.314 12 C 0.047 3.953 13 C -0.149 4.149 14 C -0.075 4.075 15 N -0.738 5.738 16 C -0.304 4.304 17 H 0.071 0.929 18 C -0.104 4.104 19 N -0.979 5.979 20 Si 1.121 2.879 21 H -0.293 1.293 22 H -0.272 1.272 23 H -0.299 1.299 24 H 0.048 0.952 25 H 0.054 0.946 26 H 0.048 0.952 27 H 0.044 0.956 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.048 0.952 31 H 0.408 0.592 32 H 0.179 0.821 33 H 0.077 0.923 34 H 0.142 0.858 35 H 0.107 0.893 36 H 0.081 0.919 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.357 0.643 40 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.582 5.923 9.373 14.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.170 4.170 3 C 0.062 3.938 4 H 0.073 0.927 5 C -0.003 4.003 6 N -0.364 5.364 7 C 0.356 3.644 8 O -0.492 6.492 9 C -0.335 4.335 10 C 0.103 3.897 11 O -0.224 6.224 12 C -0.026 4.026 13 C -0.186 4.186 14 C -0.112 4.112 15 N -0.381 5.381 16 C -0.436 4.436 17 H 0.089 0.911 18 C -0.295 4.295 19 N -0.628 5.628 20 Si 0.948 3.052 21 H -0.220 1.220 22 H -0.197 1.197 23 H -0.226 1.226 24 H 0.067 0.933 25 H 0.073 0.927 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.067 0.933 31 H 0.245 0.755 32 H 0.195 0.805 33 H 0.095 0.905 34 H 0.159 0.841 35 H 0.125 0.875 36 H 0.100 0.900 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.189 0.811 40 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 8.103 6.224 8.744 13.448 hybrid contribution 0.530 -0.946 0.276 1.119 sum 8.634 5.278 9.019 13.555 Atomic orbital electron populations 1.21681 0.95755 1.00619 1.01782 1.21980 0.96832 0.97167 1.01003 1.20632 0.90811 0.93254 0.89120 0.92709 1.21545 0.94293 0.83161 1.01307 1.45918 1.07416 1.10315 1.72727 1.17017 0.82203 0.89313 0.75875 1.90730 1.56559 1.47835 1.54044 1.20050 0.96130 0.95193 1.22091 1.22919 0.93351 0.87295 0.86114 1.86245 1.42942 1.16802 1.76444 1.23879 0.91051 0.89668 0.98003 1.22172 0.96823 0.97359 1.02246 1.20252 0.96500 0.92635 1.01809 1.42576 1.15851 1.67333 1.12302 1.20256 0.93078 1.29959 1.00282 0.91094 1.26854 1.08085 1.01988 0.92600 1.70960 1.08442 1.49827 1.33558 0.82673 0.71413 0.75400 0.75706 1.22027 1.19739 1.22572 0.93330 0.92700 0.93257 0.93733 0.90604 0.90399 0.93339 0.75533 0.80463 0.90508 0.84056 0.87500 0.90021 0.91782 0.90857 0.81063 0.94700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.89 9.18 71.98 0.66 -4.23 16 2 C -0.13 -4.37 5.61 30.59 0.17 -4.20 16 3 C 0.17 6.34 2.59 44.99 0.12 6.45 16 4 H 0.05 2.05 8.08 -2.39 -0.02 2.03 16 5 C 0.12 4.27 5.23 86.38 0.45 4.72 16 6 N -0.71 -25.11 5.30 -471.99 -2.50 -27.61 16 7 C 0.56 19.96 7.53 85.12 0.64 20.60 16 8 O -0.61 -24.51 15.92 -4.46 -0.07 -24.58 16 9 C -0.33 -9.57 5.70 -20.15 -0.11 -9.69 16 10 C 0.17 4.39 10.47 66.74 0.70 5.08 16 11 O -0.31 -6.75 10.47 -76.16 -0.80 -7.54 16 12 C 0.05 0.75 7.15 72.14 0.52 1.26 16 13 C -0.15 -2.60 6.23 30.82 0.19 -2.41 16 14 C -0.07 -1.89 5.08 29.82 0.15 -1.74 16 15 N -0.74 -33.95 4.50 -322.95 -1.45 -35.40 16 16 C -0.30 -15.51 7.75 84.03 0.65 -14.86 16 17 H 0.07 3.53 7.32 -2.91 -0.02 3.51 16 18 C -0.10 -5.68 5.50 84.86 0.47 -5.22 16 19 N -0.98 -58.80 13.70 21.65 0.30 -58.50 16 20 Si 1.12 50.02 29.92 68.60 2.05 52.07 16 21 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 22 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 23 H -0.30 -13.73 7.11 99.48 0.71 -13.02 16 24 H 0.05 2.04 5.99 -2.38 -0.01 2.03 16 25 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 27 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.08 2.51 8.14 -2.38 -0.02 2.49 16 30 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.41 14.58 6.25 -92.71 -0.58 14.00 16 32 H 0.18 4.49 7.21 -2.91 -0.02 4.47 16 33 H 0.08 1.22 8.14 -2.39 -0.02 1.21 16 34 H 0.14 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.11 1.49 8.14 -2.38 -0.02 1.47 16 36 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.07 1.92 7.15 -2.38 -0.02 1.90 16 39 H 0.36 17.96 6.63 -92.71 -0.61 17.35 16 40 H 0.24 14.66 6.77 -92.71 -0.63 14.03 16 Total: -1.00 -65.67 324.13 2.12 -63.55 By element: Atomic # 1 Polarization: 42.24 SS G_CDS: -0.01 Total: 42.23 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: 4.60 Total: -4.21 kcal Atomic # 7 Polarization: -117.85 SS G_CDS: -3.66 Total: -121.51 kcal Atomic # 8 Polarization: -31.26 SS G_CDS: -0.87 Total: -32.13 kcal Atomic # 14 Polarization: 50.02 SS G_CDS: 2.05 Total: 52.07 kcal Total: -65.67 2.12 -63.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318508795.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.887 kcal (2) G-P(sol) polarization free energy of solvation -65.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds