Wall clock time and date at job start Mon Mar 30 2020 01:10:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.30989 * 1
3 3 C 1.50701 * 120.00412 * 2 1
4 4 C 1.52993 * 109.47551 * 240.00348 * 3 2 1
5 5 O 1.42906 * 109.46683 * 0.02562 * 3 2 1
6 6 C 1.52998 * 109.47293 * 119.99857 * 3 2 1
7 7 C 1.50698 * 109.47421 * 180.02562 * 6 3 2
8 8 O 1.21280 * 120.00018 * 0.02562 * 7 6 3
9 9 N 1.34774 * 120.00238 * 180.02562 * 7 6 3
10 10 C 1.46507 * 120.00154 * 180.02562 * 9 7 6
11 11 C 1.52998 * 109.47338 * 179.97438 * 10 9 7
12 12 H 1.08996 * 112.77506 * 56.27308 * 11 10 9
13 13 C 1.53756 * 113.55250 * 187.13463 * 11 10 9
14 14 C 1.53492 * 83.25530 * 140.98868 * 13 11 10
15 15 N 1.47060 * 87.98955 * 333.76204 * 14 13 11
16 16 C 1.36943 * 136.06025 * 207.08609 * 15 14 13
17 17 H 1.08002 * 119.99788 * 179.97438 * 16 15 14
18 18 C 1.38811 * 119.99622 * 0.27775 * 16 15 14
19 19 N 1.31614 * 120.00467 * 359.72375 * 18 16 15
20 20 Si 1.86801 * 119.99700 * 179.72266 * 18 16 15
21 21 H 1.48496 * 109.47031 * 59.99836 * 20 18 16
22 22 H 1.48497 * 109.47267 * 179.97438 * 20 18 16
23 23 H 1.48504 * 109.47169 * 300.00118 * 20 18 16
24 24 H 1.07998 * 120.00245 * 179.97438 * 1 2 3
25 25 H 1.07996 * 120.00179 * 359.97438 * 1 2 3
26 26 H 1.08005 * 120.00168 * 179.97438 * 2 1 3
27 27 H 1.09009 * 109.47161 * 299.99796 * 4 3 2
28 28 H 1.08995 * 109.47635 * 59.99364 * 4 3 2
29 29 H 1.09006 * 109.47667 * 179.97438 * 4 3 2
30 30 H 0.96702 * 113.99767 * 59.99898 * 5 3 2
31 31 H 1.09004 * 109.46994 * 60.00156 * 6 3 2
32 32 H 1.09005 * 109.47353 * 300.00227 * 6 3 2
33 33 H 0.97003 * 120.00379 * 359.97438 * 9 7 6
34 34 H 1.09003 * 109.46849 * 59.99253 * 10 9 7
35 35 H 1.08995 * 109.46754 * 299.99884 * 10 9 7
36 36 H 1.08993 * 114.39365 * 27.42642 * 13 11 10
37 37 H 1.09006 * 114.26383 * 254.54044 * 13 11 10
38 38 H 1.09004 * 113.46349 * 218.98046 * 14 13 11
39 39 H 1.09006 * 113.52425 * 88.55450 * 14 13 11
40 40 H 0.96995 * 120.00147 * 180.02562 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3099 0.0000 0.0000
3 6 2.0635 1.3051 0.0000
4 6 2.9430 1.3862 -1.2492
5 8 1.1348 2.3913 0.0006
6 6 2.9431 1.3861 1.2492
7 6 3.6962 2.6914 1.2496
8 8 3.5440 3.4795 0.3404
9 7 4.5389 2.9830 2.2602
10 6 5.2706 4.2522 2.2608
11 6 6.1503 4.3332 3.5099
12 1 6.8378 3.4919 3.5971
13 6 6.8288 5.7004 3.6960
14 6 6.5111 5.4537 5.1773
15 7 5.3941 4.6017 4.7424
16 6 4.1848 4.2210 5.2599
17 1 3.5410 3.5602 4.6984
18 6 3.7836 4.6896 6.5035
19 7 4.5678 5.4954 7.1875
20 14 2.1305 4.1765 7.2060
21 1 2.0907 2.6990 7.3494
22 1 1.9407 4.8078 8.5367
23 1 1.0462 4.6144 6.2907
24 1 -0.5400 -0.9353 -0.0004
25 1 -0.5400 0.9353 0.0004
26 1 1.8499 -0.9353 0.0004
27 1 3.6514 0.5576 -1.2493
28 1 2.3165 1.3284 -2.1392
29 1 3.4878 2.3304 -1.2494
30 1 0.5438 2.4030 0.7659
31 1 3.6514 0.5575 1.2492
32 1 2.3164 1.3284 2.1393
33 1 4.6604 2.3528 2.9876
34 1 4.5617 5.0803 2.2616
35 1 5.8968 4.3109 1.3706
36 1 6.2854 6.5362 3.2556
37 1 7.8935 5.7075 3.4624
38 1 6.1919 6.3507 5.7079
39 1 7.2934 4.9080 5.7050
40 1 4.2876 5.8225 8.0566
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001323234083.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:10:11
Heat of formation + Delta-G solvation = -8.388662 kcal
Electronic energy + Delta-G solvation = -20999.374928 eV
Core-core repulsion = 17816.881578 eV
Total energy + Delta-G solvation = -3182.493350 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 268.157 amu
Computer time = 0.62 seconds
Orbital eigenvalues (eV)
-39.90608 -38.42142 -37.50076 -33.96295 -33.02545 -32.23894 -31.30801 -28.80945
-27.97170 -26.71856 -23.48935 -22.99570 -21.73612 -20.10526 -19.69017 -19.20079
-17.37924 -16.69720 -16.18124 -15.95713 -15.48294 -15.07785 -14.78087 -14.41853
-13.96788 -13.68973 -13.35114 -12.91326 -12.87375 -12.31125 -12.17973 -12.05711
-11.60491 -11.55251 -11.37691 -11.12569 -11.09765 -10.97032 -10.78403 -10.59655
-10.18567 -9.98548 -9.85926 -9.58975 -9.46317 -9.06386 -8.83308 -8.48088
-6.92280 -5.79317 -3.11924 2.05032 3.03226 3.34943 3.39450 3.41405
3.58825 4.27003 4.40698 4.65353 4.73738 4.95817 5.10631 5.15707
5.30492 5.39619 5.47756 5.56331 5.64994 5.65847 5.75370 5.86344
5.91722 6.03901 6.12040 6.32032 6.33306 6.39204 6.44018 6.58148
6.59635 6.73789 6.97257 7.20620 7.38092 7.55330 7.71835 7.94927
7.96850 8.67058 9.00121 9.67621 10.60966 11.37881
Molecular weight = 268.16amu
Principal moments of inertia in cm(-1)
A = 0.018248 B = 0.005447 C = 0.004394
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1534.083537 B = 5138.919926 C = 6370.206439
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.184 4.184
2 C -0.185 4.185
3 C 0.178 3.822
4 C -0.146 4.146
5 O -0.538 6.538
6 C -0.168 4.168
7 C 0.510 3.490
8 O -0.530 6.530
9 N -0.717 5.717
10 C 0.123 3.877
11 C 0.127 3.873
12 H 0.047 0.953
13 C -0.161 4.161
14 C 0.151 3.849
15 N -0.601 5.601
16 C -0.214 4.214
17 H 0.079 0.921
18 C -0.007 4.007
19 N -0.918 5.918
20 Si 0.908 3.092
21 H -0.286 1.286
22 H -0.290 1.290
23 H -0.284 1.284
24 H 0.098 0.902
25 H 0.105 0.895
26 H 0.115 0.885
27 H 0.060 0.940
28 H 0.056 0.944
29 H 0.095 0.905
30 H 0.369 0.631
31 H 0.098 0.902
32 H 0.095 0.905
33 H 0.401 0.599
34 H 0.069 0.931
35 H 0.057 0.943
36 H 0.079 0.921
37 H 0.057 0.943
38 H 0.072 0.928
39 H 0.024 0.976
40 H 0.254 0.746
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.323 -9.889 -11.611 15.309
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.220 4.220
2 C -0.204 4.204
3 C 0.136 3.864
4 C -0.203 4.203
5 O -0.343 6.343
6 C -0.208 4.208
7 C 0.295 3.705
8 O -0.407 6.407
9 N -0.368 5.368
10 C -0.001 4.001
11 C 0.019 3.981
12 H 0.064 0.936
13 C -0.200 4.200
14 C 0.025 3.975
15 N -0.327 5.327
16 C -0.342 4.342
17 H 0.097 0.903
18 C -0.204 4.204
19 N -0.565 5.565
20 Si 0.739 3.261
21 H -0.213 1.213
22 H -0.215 1.215
23 H -0.211 1.211
24 H 0.116 0.884
25 H 0.123 0.877
26 H 0.132 0.868
27 H 0.079 0.921
28 H 0.076 0.924
29 H 0.114 0.886
30 H 0.216 0.784
31 H 0.116 0.884
32 H 0.113 0.887
33 H 0.235 0.765
34 H 0.088 0.912
35 H 0.075 0.925
36 H 0.098 0.902
37 H 0.076 0.924
38 H 0.090 0.910
39 H 0.042 0.958
40 H 0.064 0.936
Dipole moment (debyes) X Y Z Total
from point charges -1.396 -9.163 -12.554 15.605
hybrid contribution -1.100 -1.024 1.611 2.203
sum -2.496 -10.187 -10.943 15.157
Atomic orbital electron populations
1.23857 0.96080 1.02333 0.99747 1.23642 0.96767 0.98881 1.01078
1.19825 0.88029 0.83910 0.94612 1.21926 0.98815 1.04333 0.95196
1.86709 1.50094 1.48909 1.48600 1.22395 1.00528 0.97330 1.00565
1.20303 0.79630 0.88223 0.82302 1.90643 1.64268 1.50084 1.35726
1.46015 1.44548 1.21551 1.24672 1.21748 0.94818 0.85661 0.97918
1.22461 0.92171 0.95944 0.87500 0.93558 1.23696 0.98427 0.97034
1.00835 1.22028 0.88405 0.95521 0.91514 1.45682 1.14938 1.55211
1.16873 1.18790 0.91054 1.24475 0.99840 0.90314 1.24773 0.98423
1.00087 0.97096 1.69810 1.36546 1.36310 1.13845 0.86263 0.83608
0.77876 0.78388 1.21264 1.21527 1.21099 0.88351 0.87684 0.86751
0.92073 0.92450 0.88603 0.78358 0.88358 0.88711 0.76501 0.91229
0.92458 0.90207 0.92399 0.91000 0.95790 0.93615
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -1.71 13.93 29.02 0.40 -1.31 16
2 C -0.19 -1.85 8.77 -36.02 -0.32 -2.16 16
3 C 0.18 2.18 0.94 -91.78 -0.09 2.10 16
4 C -0.15 -1.84 8.50 37.15 0.32 -1.53 16
5 O -0.54 -7.67 10.84 -53.51 -0.58 -8.25 16
6 C -0.17 -2.04 4.93 -27.89 -0.14 -2.18 16
7 C 0.51 8.27 7.39 -10.99 -0.08 8.19 16
8 O -0.53 -10.30 12.96 -12.72 -0.16 -10.46 16
9 N -0.72 -11.88 5.33 -60.29 -0.32 -12.20 16
10 C 0.12 2.22 5.53 -4.04 -0.02 2.20 16
11 C 0.13 2.43 4.11 -72.28 -0.30 2.13 16
12 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16
13 C -0.16 -2.93 8.04 -26.08 -0.21 -3.14 16
14 C 0.15 3.44 7.39 -8.53 -0.06 3.38 16
15 N -0.60 -14.52 3.65 -176.87 -0.65 -15.17 16
16 C -0.21 -5.68 10.55 -15.06 -0.16 -5.84 16
17 H 0.08 1.98 7.51 -52.49 -0.39 1.59 16
18 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16
19 N -0.92 -26.80 11.51 55.49 0.64 -26.16 16
20 Si 0.91 21.70 29.55 -169.99 -5.02 16.68 16
21 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16
22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16
23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16
24 H 0.10 0.76 8.06 -52.49 -0.42 0.34 16
25 H 0.11 0.99 6.41 -52.49 -0.34 0.66 16
26 H 0.11 0.96 8.06 -52.48 -0.42 0.53 16
27 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16
28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16
29 H 0.10 1.48 5.52 -51.93 -0.29 1.20 16
30 H 0.37 4.20 8.05 45.56 0.37 4.56 16
31 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16
32 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16
33 H 0.40 6.31 8.38 -40.82 -0.34 5.97 16
34 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16
35 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16
36 H 0.08 1.46 8.13 -51.93 -0.42 1.04 16
37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16
38 H 0.07 1.84 7.12 -51.93 -0.37 1.47 16
39 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16
40 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16
LS Contribution 329.57 15.07 4.97 4.97
Total: -1.00 -32.30 329.57 -7.45 -39.75
By element:
Atomic # 1 Polarization: 14.87 SS G_CDS: -5.57 Total: 9.30 kcal
Atomic # 6 Polarization: 2.30 SS G_CDS: -0.75 Total: 1.55 kcal
Atomic # 7 Polarization: -53.20 SS G_CDS: -0.33 Total: -53.53 kcal
Atomic # 8 Polarization: -17.96 SS G_CDS: -0.75 Total: -18.71 kcal
Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal
Total LS contribution 4.97 Total: 4.97 kcal
Total: -32.30 -7.45 -39.75 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001323234083.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 31.359 kcal
(2) G-P(sol) polarization free energy of solvation -32.299 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.941 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.448 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.747 kcal
(6) G-S(sol) free energy of system = (1) + (5) -8.389 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds