Wall clock time and date at job start Mon Mar 30 2020 01:10:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.30989 * 1
3 3 C 1.50701 * 120.00412 * 2 1
4 4 C 1.52993 * 109.47551 * 240.00348 * 3 2 1
5 5 O 1.42906 * 109.46683 * 0.02562 * 3 2 1
6 6 C 1.52998 * 109.47293 * 119.99857 * 3 2 1
7 7 C 1.50698 * 109.47421 * 180.02562 * 6 3 2
8 8 O 1.21280 * 120.00018 * 0.02562 * 7 6 3
9 9 N 1.34774 * 120.00238 * 180.02562 * 7 6 3
10 10 C 1.46507 * 120.00154 * 180.02562 * 9 7 6
11 11 C 1.52998 * 109.47338 * 179.97438 * 10 9 7
12 12 H 1.08996 * 112.77506 * 56.27308 * 11 10 9
13 13 C 1.53756 * 113.55250 * 187.13463 * 11 10 9
14 14 C 1.53492 * 83.25530 * 140.98868 * 13 11 10
15 15 N 1.47060 * 87.98955 * 333.76204 * 14 13 11
16 16 C 1.36943 * 136.06025 * 207.08609 * 15 14 13
17 17 H 1.08002 * 119.99788 * 179.97438 * 16 15 14
18 18 C 1.38811 * 119.99622 * 0.27775 * 16 15 14
19 19 N 1.31614 * 120.00467 * 359.72375 * 18 16 15
20 20 Si 1.86801 * 119.99700 * 179.72266 * 18 16 15
21 21 H 1.48496 * 109.47031 * 59.99836 * 20 18 16
22 22 H 1.48497 * 109.47267 * 179.97438 * 20 18 16
23 23 H 1.48504 * 109.47169 * 300.00118 * 20 18 16
24 24 H 1.07998 * 120.00245 * 179.97438 * 1 2 3
25 25 H 1.07996 * 120.00179 * 359.97438 * 1 2 3
26 26 H 1.08005 * 120.00168 * 179.97438 * 2 1 3
27 27 H 1.09009 * 109.47161 * 299.99796 * 4 3 2
28 28 H 1.08995 * 109.47635 * 59.99364 * 4 3 2
29 29 H 1.09006 * 109.47667 * 179.97438 * 4 3 2
30 30 H 0.96702 * 113.99767 * 59.99898 * 5 3 2
31 31 H 1.09004 * 109.46994 * 60.00156 * 6 3 2
32 32 H 1.09005 * 109.47353 * 300.00227 * 6 3 2
33 33 H 0.97003 * 120.00379 * 359.97438 * 9 7 6
34 34 H 1.09003 * 109.46849 * 59.99253 * 10 9 7
35 35 H 1.08995 * 109.46754 * 299.99884 * 10 9 7
36 36 H 1.08993 * 114.39365 * 27.42642 * 13 11 10
37 37 H 1.09006 * 114.26383 * 254.54044 * 13 11 10
38 38 H 1.09004 * 113.46349 * 218.98046 * 14 13 11
39 39 H 1.09006 * 113.52425 * 88.55450 * 14 13 11
40 40 H 0.96995 * 120.00147 * 180.02562 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3099 0.0000 0.0000
3 6 2.0635 1.3051 0.0000
4 6 2.9430 1.3862 -1.2492
5 8 1.1348 2.3913 0.0006
6 6 2.9431 1.3861 1.2492
7 6 3.6962 2.6914 1.2496
8 8 3.5440 3.4795 0.3404
9 7 4.5389 2.9830 2.2602
10 6 5.2706 4.2522 2.2608
11 6 6.1503 4.3332 3.5099
12 1 6.8378 3.4919 3.5971
13 6 6.8288 5.7004 3.6960
14 6 6.5111 5.4537 5.1773
15 7 5.3941 4.6017 4.7424
16 6 4.1848 4.2210 5.2599
17 1 3.5410 3.5602 4.6984
18 6 3.7836 4.6896 6.5035
19 7 4.5678 5.4954 7.1875
20 14 2.1305 4.1765 7.2060
21 1 2.0907 2.6990 7.3494
22 1 1.9407 4.8078 8.5367
23 1 1.0462 4.6144 6.2907
24 1 -0.5400 -0.9353 -0.0004
25 1 -0.5400 0.9353 0.0004
26 1 1.8499 -0.9353 0.0004
27 1 3.6514 0.5576 -1.2493
28 1 2.3165 1.3284 -2.1392
29 1 3.4878 2.3304 -1.2494
30 1 0.5438 2.4030 0.7659
31 1 3.6514 0.5575 1.2492
32 1 2.3164 1.3284 2.1393
33 1 4.6604 2.3528 2.9876
34 1 4.5617 5.0803 2.2616
35 1 5.8968 4.3109 1.3706
36 1 6.2854 6.5362 3.2556
37 1 7.8935 5.7075 3.4624
38 1 6.1919 6.3507 5.7079
39 1 7.2934 4.9080 5.7050
40 1 4.2876 5.8225 8.0566
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001323234083.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:10:10
Heat of formation + Delta-G solvation = -31.542451 kcal
Electronic energy + Delta-G solvation = -21000.378952 eV
Core-core repulsion = 17816.881578 eV
Total energy + Delta-G solvation = -3183.497374 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 268.157 amu
Computer time = 0.57 seconds
Orbital eigenvalues (eV)
-41.12066 -39.94639 -38.70272 -35.38766 -34.22608 -33.94564 -32.21927 -30.12510
-29.78833 -28.00169 -25.38321 -24.13081 -23.11309 -21.44495 -20.86618 -20.55360
-18.77637 -18.12150 -17.39616 -17.13328 -17.05581 -16.44182 -16.07813 -15.66983
-15.54883 -15.19724 -14.86443 -14.32022 -13.98395 -13.58336 -13.35490 -13.18278
-13.08962 -12.93927 -12.67900 -12.67056 -12.47651 -12.44217 -12.33747 -11.98899
-11.80763 -11.63236 -11.18508 -11.10433 -10.82998 -10.47028 -10.29281 -9.88412
-8.88080 -7.85878 -5.17712 1.32530 1.44482 1.47728 1.53011 1.78497
2.33830 2.49486 3.34458 3.37651 3.46665 3.71247 3.81093 3.94288
4.06814 4.13563 4.31724 4.36209 4.41126 4.59926 4.66687 4.71496
4.74380 4.88343 4.89078 4.97427 5.05899 5.11770 5.16552 5.33354
5.36689 5.56486 5.63107 5.67450 5.75780 5.83791 5.98235 6.68536
6.83847 6.94668 7.40739 7.65819 8.65742 9.31757
Molecular weight = 268.16amu
Principal moments of inertia in cm(-1)
A = 0.018248 B = 0.005447 C = 0.004394
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1534.083537 B = 5138.919926 C = 6370.206439
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.182 4.182
2 C -0.189 4.189
3 C 0.172 3.828
4 C -0.145 4.145
5 O -0.564 6.564
6 C -0.160 4.160
7 C 0.506 3.494
8 O -0.566 6.566
9 N -0.717 5.717
10 C 0.133 3.867
11 C 0.134 3.866
12 H 0.070 0.930
13 C -0.136 4.136
14 C 0.142 3.858
15 N -0.629 5.629
16 C -0.207 4.207
17 H 0.089 0.911
18 C -0.073 4.073
19 N -0.955 5.955
20 Si 0.969 3.031
21 H -0.272 1.272
22 H -0.300 1.300
23 H -0.283 1.283
24 H 0.117 0.883
25 H 0.098 0.902
26 H 0.137 0.863
27 H 0.086 0.914
28 H 0.054 0.946
29 H 0.064 0.936
30 H 0.378 0.622
31 H 0.129 0.871
32 H 0.106 0.894
33 H 0.406 0.594
34 H 0.035 0.965
35 H 0.075 0.925
36 H 0.076 0.924
37 H 0.099 0.901
38 H 0.034 0.966
39 H 0.023 0.977
40 H 0.245 0.755
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.343 -12.257 -12.697 17.699
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.218 4.218
2 C -0.207 4.207
3 C 0.131 3.869
4 C -0.202 4.202
5 O -0.371 6.371
6 C -0.200 4.200
7 C 0.293 3.707
8 O -0.445 6.445
9 N -0.368 5.368
10 C 0.008 3.992
11 C 0.028 3.972
12 H 0.087 0.913
13 C -0.175 4.175
14 C 0.017 3.983
15 N -0.355 5.355
16 C -0.336 4.336
17 H 0.107 0.893
18 C -0.265 4.265
19 N -0.605 5.605
20 Si 0.798 3.202
21 H -0.197 1.197
22 H -0.226 1.226
23 H -0.209 1.209
24 H 0.135 0.865
25 H 0.116 0.884
26 H 0.154 0.846
27 H 0.104 0.896
28 H 0.073 0.927
29 H 0.082 0.918
30 H 0.226 0.774
31 H 0.147 0.853
32 H 0.124 0.876
33 H 0.241 0.759
34 H 0.054 0.946
35 H 0.093 0.907
36 H 0.095 0.905
37 H 0.117 0.883
38 H 0.053 0.947
39 H 0.041 0.959
40 H 0.054 0.946
Dipole moment (debyes) X Y Z Total
from point charges -1.408 -11.568 -13.668 17.961
hybrid contribution -1.058 -0.272 1.859 2.156
sum -2.466 -11.840 -11.809 16.903
Atomic orbital electron populations
1.24026 0.96102 1.02959 0.98708 1.23594 0.96866 0.98261 1.01950
1.19953 0.87962 0.84661 0.94282 1.21906 0.99116 1.03603 0.95579
1.86681 1.50772 1.50241 1.49413 1.22428 1.00789 0.95714 1.01050
1.21027 0.79090 0.89254 0.81292 1.90644 1.65253 1.51608 1.36989
1.46021 1.44710 1.20988 1.25096 1.21488 0.94189 0.85491 0.98045
1.22595 0.91790 0.97079 0.85747 0.91275 1.23521 1.00875 0.96425
0.96658 1.22040 0.88183 0.94007 0.94114 1.46003 1.14967 1.55745
1.18774 1.19193 0.92064 1.22894 0.99402 0.89347 1.25559 1.01739
1.01131 0.98095 1.70006 1.38272 1.38363 1.13868 0.85286 0.79901
0.78063 0.76948 1.19727 1.22637 1.20927 0.86455 0.88392 0.84567
0.89567 0.92717 0.91757 0.77378 0.85263 0.87616 0.75852 0.94624
0.90671 0.90529 0.88282 0.94740 0.95931 0.94644
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -2.90 13.93 67.79 0.94 -1.96 16
2 C -0.19 -3.18 8.77 25.66 0.23 -2.95 16
3 C 0.17 3.89 0.94 -11.54 -0.01 3.88 16
4 C -0.15 -3.46 8.50 71.98 0.61 -2.84 16
5 O -0.56 -15.66 10.84 -131.50 -1.43 -17.09 16
6 C -0.16 -3.47 4.93 29.85 0.15 -3.32 16
7 C 0.51 15.66 7.39 87.66 0.65 16.31 16
8 O -0.57 -21.81 12.96 14.45 0.19 -21.62 16
9 N -0.72 -22.48 5.33 -463.06 -2.47 -24.95 16
10 C 0.13 4.62 5.53 86.38 0.48 5.10 16
11 C 0.13 4.86 4.11 41.87 0.17 5.03 16
12 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16
13 C -0.14 -4.70 8.04 31.01 0.25 -4.45 16
14 C 0.14 6.50 7.39 83.17 0.61 7.11 16
15 N -0.63 -30.11 3.65 -713.51 -2.60 -32.72 16
16 C -0.21 -10.92 10.55 84.03 0.89 -10.04 16
17 H 0.09 4.36 7.51 -2.91 -0.02 4.33 16
18 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16
19 N -0.96 -57.30 11.51 21.65 0.25 -57.05 16
20 Si 0.97 44.95 29.55 68.60 2.03 46.97 16
21 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16
22 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16
23 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16
24 H 0.12 1.43 8.06 -2.91 -0.02 1.41 16
25 H 0.10 1.70 6.41 -2.91 -0.02 1.68 16
26 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16
27 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16
28 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16
29 H 0.06 1.97 5.52 -2.38 -0.01 1.96 16
30 H 0.38 8.33 8.05 -74.06 -0.60 7.73 16
31 H 0.13 2.01 8.14 -2.38 -0.02 1.99 16
32 H 0.11 2.10 8.14 -2.38 -0.02 2.08 16
33 H 0.41 11.83 8.38 -92.71 -0.78 11.05 16
34 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16
35 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16
36 H 0.08 2.71 8.13 -2.39 -0.02 2.69 16
37 H 0.10 2.66 8.14 -2.38 -0.02 2.64 16
38 H 0.03 1.82 7.12 -2.38 -0.02 1.80 16
39 H 0.02 1.04 8.14 -2.38 -0.02 1.02 16
40 H 0.24 14.45 8.31 -92.71 -0.77 13.68 16
Total: -1.00 -71.47 329.57 1.06 -70.41
By element:
Atomic # 1 Polarization: 28.11 SS G_CDS: -0.33 Total: 27.78 kcal
Atomic # 6 Polarization: 2.84 SS G_CDS: 5.43 Total: 8.27 kcal
Atomic # 7 Polarization: -109.90 SS G_CDS: -4.82 Total: -114.72 kcal
Atomic # 8 Polarization: -37.47 SS G_CDS: -1.24 Total: -38.71 kcal
Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.97 kcal
Total: -71.47 1.06 -70.41 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001323234083.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 38.865 kcal
(2) G-P(sol) polarization free energy of solvation -71.470 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.606 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.063 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.407 kcal
(6) G-S(sol) free energy of system = (1) + (5) -31.542 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.57 seconds