Wall clock time and date at job start Mon Mar 30 2020 01:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47014 * 2 1 4 4 N 1.46496 * 109.47239 * 120.00271 * 2 1 3 5 5 C 1.46503 * 119.99471 * 299.99651 * 4 2 1 6 6 C 1.34770 * 120.00255 * 120.00306 * 4 2 1 7 7 O 1.21348 * 119.99931 * 352.46665 * 6 4 2 8 8 C 1.49454 * 120.00163 * 172.47053 * 6 4 2 9 9 O 1.21350 * 119.99818 * 353.91449 * 8 6 4 10 10 N 1.34774 * 119.99842 * 173.91712 * 8 6 4 11 11 C 1.46503 * 119.99684 * 175.42357 * 10 8 6 12 12 C 1.53004 * 109.46996 * 184.99015 * 11 10 8 13 13 C 1.50697 * 115.54917 * 55.34863 * 12 11 10 14 14 H 1.08000 * 120.00010 * 269.15436 * 13 12 11 15 15 C 1.37874 * 120.00286 * 89.16127 * 13 12 11 16 16 N 1.31513 * 120.00228 * 180.39091 * 15 13 12 17 17 Si 1.86803 * 119.99905 * 0.38234 * 15 13 12 18 18 H 1.48497 * 109.46943 * 92.31636 * 17 15 13 19 19 H 1.48499 * 109.46926 * 212.31895 * 17 15 13 20 20 H 1.48499 * 109.47036 * 332.32050 * 17 15 13 21 21 C 1.52998 * 117.49672 * 269.67385 * 12 11 10 22 22 C 1.52996 * 117.49502 * 201.01597 * 12 11 10 23 23 H 1.09005 * 109.47036 * 60.00166 * 1 2 3 24 24 H 1.09003 * 109.46851 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46753 * 299.99835 * 1 2 3 26 26 H 1.09001 * 109.46753 * 240.00165 * 2 1 3 27 27 H 1.09000 * 109.47458 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.47084 * 299.99805 * 3 2 1 29 29 H 1.08993 * 109.47506 * 59.99859 * 3 2 1 30 30 H 1.08999 * 109.47238 * 265.01675 * 5 4 2 31 31 H 1.08994 * 109.47580 * 25.02832 * 5 4 2 32 32 H 1.09001 * 109.46574 * 145.02159 * 5 4 2 33 33 H 0.96998 * 120.00560 * 355.14341 * 10 8 6 34 34 H 1.09003 * 109.46933 * 304.98560 * 11 10 8 35 35 H 1.08998 * 109.47690 * 64.98753 * 11 10 8 36 36 H 0.97002 * 120.00081 * 179.97438 * 16 15 13 37 37 H 1.09006 * 117.49847 * 0.02562 * 21 12 11 38 38 H 1.09002 * 117.49650 * 145.01982 * 21 12 11 39 39 H 1.08996 * 117.50030 * 214.97327 * 22 12 11 40 40 H 1.08997 * 117.50350 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.6645 -0.1900 2.5267 6 6 2.7933 -1.7864 1.0724 7 8 2.9745 -2.2811 -0.0207 8 6 3.4294 -2.3922 2.2816 9 8 3.3400 -1.8367 3.3568 10 7 4.1023 -3.5553 2.1778 11 6 4.8102 -4.0982 3.3398 12 6 5.5875 -5.3490 2.9248 13 6 6.5488 -5.1664 1.7787 14 1 6.2183 -5.3354 0.7646 15 6 7.8503 -4.7836 2.0249 16 7 8.6871 -4.6168 1.0241 17 14 8.4250 -4.5018 3.7798 18 1 9.0067 -5.7577 4.3179 19 1 9.4547 -3.4319 3.7977 20 1 7.2705 -4.0918 4.6189 21 6 4.8709 -6.6960 3.0381 22 6 5.9815 -6.3339 4.0273 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4426 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 2.4595 0.4590 2.8940 31 1 0.7335 0.3736 2.4671 32 1 1.5372 -1.0305 3.2090 33 1 4.1145 -4.0350 1.3348 34 1 5.5037 -3.3504 3.7246 35 1 4.0898 -4.3587 4.1152 36 1 9.6027 -4.3472 1.1973 37 1 3.8455 -6.6910 3.4079 38 1 5.0950 -7.4503 2.2838 39 1 6.9358 -6.8503 3.9235 40 1 5.6874 -6.0907 5.0483 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327746807.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:10 Heat of formation + Delta-G solvation = -39.288153 kcal Electronic energy + Delta-G solvation = -21057.225181 eV Core-core repulsion = 17873.391928 eV Total energy + Delta-G solvation = -3183.833253 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.52144 -38.47923 -37.07704 -36.59782 -33.62744 -32.16947 -32.13432 -27.43935 -27.37999 -26.85574 -25.55684 -23.85267 -21.79193 -20.62652 -19.62855 -18.99079 -17.53184 -16.95606 -16.35204 -15.87979 -15.41709 -15.08562 -14.68159 -14.25642 -14.12241 -13.89659 -13.23891 -13.10981 -13.03461 -12.79614 -12.54025 -12.41222 -12.32130 -12.19577 -11.98170 -11.45168 -11.20835 -11.16684 -10.90835 -10.82728 -10.51773 -10.23732 -9.67076 -9.22714 -9.11274 -8.77839 -8.67474 -8.58911 -8.40539 -6.15761 -4.21256 1.77665 2.58452 3.26328 3.37176 3.40494 3.53965 3.82375 4.38090 4.61636 4.77610 4.89752 4.98082 5.06371 5.13515 5.14881 5.37251 5.47191 5.57053 5.62662 5.64303 5.76432 5.88623 5.95103 6.01937 6.03954 6.05438 6.13682 6.37258 6.40047 6.44602 6.65863 6.83482 6.94983 7.04486 7.15632 7.65074 7.74528 8.11980 8.39955 8.47979 8.85678 9.46279 10.95455 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.026128 B = 0.004898 C = 0.004712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.406870 B = 5715.555362 C = 5941.365625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.127 3.873 3 C -0.161 4.161 4 N -0.591 5.591 5 C 0.083 3.917 6 C 0.508 3.492 7 O -0.516 6.516 8 C 0.498 3.502 9 O -0.537 6.537 10 N -0.663 5.663 11 C 0.154 3.846 12 C -0.018 4.018 13 C -0.493 4.493 14 H 0.080 0.920 15 C 0.080 3.920 16 N -0.892 5.892 17 Si 0.880 3.120 18 H -0.278 1.278 19 H -0.294 1.294 20 H -0.257 1.257 21 C -0.178 4.178 22 C -0.191 4.191 23 H 0.068 0.932 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.103 0.897 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.089 0.911 33 H 0.417 0.583 34 H 0.069 0.931 35 H 0.050 0.950 36 H 0.266 0.734 37 H 0.073 0.927 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.892 8.451 1.972 17.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.024 3.976 3 C -0.219 4.219 4 N -0.326 5.326 5 C -0.059 4.059 6 C 0.290 3.710 7 O -0.391 6.391 8 C 0.278 3.722 9 O -0.416 6.416 10 N -0.313 5.313 11 C 0.030 3.970 12 C -0.020 4.020 13 C -0.530 4.530 14 H 0.098 0.902 15 C -0.123 4.123 16 N -0.528 5.528 17 Si 0.708 3.292 18 H -0.204 1.204 19 H -0.221 1.221 20 H -0.182 1.182 21 C -0.215 4.215 22 C -0.229 4.229 23 H 0.087 0.913 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.121 0.879 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.107 0.893 33 H 0.254 0.746 34 H 0.087 0.913 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.092 0.908 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -14.626 8.614 2.081 17.101 hybrid contribution 0.593 0.034 0.584 0.833 sum -14.032 8.649 2.665 16.698 Atomic orbital electron populations 1.22142 0.94706 1.02604 1.02355 1.21172 0.94297 0.93250 0.88888 1.22143 1.02055 0.95326 1.02361 1.47763 1.49293 1.27408 1.08095 1.22014 0.99951 1.01336 0.82648 1.20450 0.79540 0.81183 0.89780 1.90756 1.59908 1.60643 1.27809 1.19923 0.81163 0.82593 0.88552 1.90676 1.60586 1.61851 1.28524 1.45712 1.47967 1.20955 1.16684 1.21265 0.93691 0.96445 0.85564 1.19613 0.98561 0.86404 0.97396 1.20188 0.93332 1.47506 0.91943 0.90159 1.24988 0.96470 0.93846 0.96995 1.69891 1.05509 1.46261 1.31183 0.86851 0.78843 0.77845 0.85665 1.20434 1.22117 1.18159 1.22906 0.94895 1.01340 1.02401 1.22933 0.99696 1.06181 0.94077 0.91280 0.92105 0.92167 0.87900 0.92039 0.91290 0.92179 0.92084 0.91873 0.89252 0.74562 0.91288 0.93137 0.92459 0.90808 0.89250 0.89091 0.90624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 9.18 37.16 0.34 -1.04 16 2 C 0.13 1.42 3.24 -67.93 -0.22 1.20 16 3 C -0.16 -1.50 9.19 37.16 0.34 -1.16 16 4 N -0.59 -8.09 2.76 -174.44 -0.48 -8.57 16 5 C 0.08 0.97 8.22 59.85 0.49 1.46 16 6 C 0.51 8.78 7.71 -11.59 -0.09 8.69 16 7 O -0.52 -10.08 15.86 5.50 0.09 -9.99 16 8 C 0.50 9.33 7.68 -11.58 -0.09 9.24 16 9 O -0.54 -10.34 13.46 5.50 0.07 -10.26 16 10 N -0.66 -13.16 5.34 -60.72 -0.32 -13.49 16 11 C 0.15 3.17 5.36 -4.04 -0.02 3.15 16 12 C -0.02 -0.41 0.94 -155.66 -0.15 -0.55 16 13 C -0.49 -13.07 8.87 -34.44 -0.31 -13.38 16 14 H 0.08 2.33 8.06 -52.49 -0.42 1.91 16 15 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 16 N -0.89 -26.64 13.96 55.43 0.77 -25.87 16 17 Si 0.88 21.30 24.80 -169.99 -4.22 17.08 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 19 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 20 H -0.26 -5.90 5.69 56.52 0.32 -5.58 16 21 C -0.18 -3.41 9.93 -26.70 -0.27 -3.67 16 22 C -0.19 -3.86 7.39 -26.70 -0.20 -4.06 16 23 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.46 6.66 -51.93 -0.35 0.11 16 26 H 0.10 1.33 6.93 -51.93 -0.36 0.97 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.50 7.67 -51.93 -0.40 0.10 16 30 H 0.06 0.74 8.06 -51.93 -0.42 0.32 16 31 H 0.06 0.55 6.44 -51.93 -0.33 0.21 16 32 H 0.09 1.17 6.10 -51.93 -0.32 0.85 16 33 H 0.42 8.43 7.66 -40.82 -0.31 8.12 16 34 H 0.07 1.55 6.88 -51.93 -0.36 1.19 16 35 H 0.05 0.95 8.10 -51.93 -0.42 0.53 16 36 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 37 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.09 1.73 8.14 -51.93 -0.42 1.31 16 39 H 0.09 1.93 6.93 -51.93 -0.36 1.57 16 40 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 324.06 15.07 4.88 4.88 Total: -1.00 -30.45 324.06 -5.68 -36.13 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -6.22 Total: 8.07 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: -0.26 Total: 2.03 kcal Atomic # 7 Polarization: -47.90 SS G_CDS: -0.03 Total: -47.93 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: 0.16 Total: -20.26 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.22 Total: 17.08 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.45 -5.68 -36.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327746807.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.161 kcal (2) G-P(sol) polarization free energy of solvation -30.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds