Wall clock time and date at job start Mon Mar 30 2020 01:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47014 * 2 1 4 4 N 1.46496 * 109.47239 * 120.00271 * 2 1 3 5 5 C 1.46503 * 119.99471 * 299.99651 * 4 2 1 6 6 C 1.34770 * 120.00255 * 120.00306 * 4 2 1 7 7 O 1.21348 * 119.99931 * 352.46665 * 6 4 2 8 8 C 1.49454 * 120.00163 * 172.47053 * 6 4 2 9 9 O 1.21350 * 119.99818 * 353.91449 * 8 6 4 10 10 N 1.34774 * 119.99842 * 173.91712 * 8 6 4 11 11 C 1.46503 * 119.99684 * 175.42357 * 10 8 6 12 12 C 1.53004 * 109.46996 * 184.99015 * 11 10 8 13 13 C 1.50697 * 115.54917 * 55.34863 * 12 11 10 14 14 H 1.08000 * 120.00010 * 269.15436 * 13 12 11 15 15 C 1.37874 * 120.00286 * 89.16127 * 13 12 11 16 16 N 1.31513 * 120.00228 * 180.39091 * 15 13 12 17 17 Si 1.86803 * 119.99905 * 0.38234 * 15 13 12 18 18 H 1.48497 * 109.46943 * 92.31636 * 17 15 13 19 19 H 1.48499 * 109.46926 * 212.31895 * 17 15 13 20 20 H 1.48499 * 109.47036 * 332.32050 * 17 15 13 21 21 C 1.52998 * 117.49672 * 269.67385 * 12 11 10 22 22 C 1.52996 * 117.49502 * 201.01597 * 12 11 10 23 23 H 1.09005 * 109.47036 * 60.00166 * 1 2 3 24 24 H 1.09003 * 109.46851 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46753 * 299.99835 * 1 2 3 26 26 H 1.09001 * 109.46753 * 240.00165 * 2 1 3 27 27 H 1.09000 * 109.47458 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.47084 * 299.99805 * 3 2 1 29 29 H 1.08993 * 109.47506 * 59.99859 * 3 2 1 30 30 H 1.08999 * 109.47238 * 265.01675 * 5 4 2 31 31 H 1.08994 * 109.47580 * 25.02832 * 5 4 2 32 32 H 1.09001 * 109.46574 * 145.02159 * 5 4 2 33 33 H 0.96998 * 120.00560 * 355.14341 * 10 8 6 34 34 H 1.09003 * 109.46933 * 304.98560 * 11 10 8 35 35 H 1.08998 * 109.47690 * 64.98753 * 11 10 8 36 36 H 0.97002 * 120.00081 * 179.97438 * 16 15 13 37 37 H 1.09006 * 117.49847 * 0.02562 * 21 12 11 38 38 H 1.09002 * 117.49650 * 145.01982 * 21 12 11 39 39 H 1.08996 * 117.50030 * 214.97327 * 22 12 11 40 40 H 1.08997 * 117.50350 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.6645 -0.1900 2.5267 6 6 2.7933 -1.7864 1.0724 7 8 2.9745 -2.2811 -0.0207 8 6 3.4294 -2.3922 2.2816 9 8 3.3400 -1.8367 3.3568 10 7 4.1023 -3.5553 2.1778 11 6 4.8102 -4.0982 3.3398 12 6 5.5875 -5.3490 2.9248 13 6 6.5488 -5.1664 1.7787 14 1 6.2183 -5.3354 0.7646 15 6 7.8503 -4.7836 2.0249 16 7 8.6871 -4.6168 1.0241 17 14 8.4250 -4.5018 3.7798 18 1 9.0067 -5.7577 4.3179 19 1 9.4547 -3.4319 3.7977 20 1 7.2705 -4.0918 4.6189 21 6 4.8709 -6.6960 3.0381 22 6 5.9815 -6.3339 4.0273 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4426 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 2.4595 0.4590 2.8940 31 1 0.7335 0.3736 2.4671 32 1 1.5372 -1.0305 3.2090 33 1 4.1145 -4.0350 1.3348 34 1 5.5037 -3.3504 3.7246 35 1 4.0898 -4.3587 4.1152 36 1 9.6027 -4.3472 1.1973 37 1 3.8455 -6.6910 3.4079 38 1 5.0950 -7.4503 2.2838 39 1 6.9358 -6.8503 3.9235 40 1 5.6874 -6.0907 5.0483 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327746807.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:09 Heat of formation + Delta-G solvation = -60.843243 kcal Electronic energy + Delta-G solvation = -21058.159880 eV Core-core repulsion = 17873.391928 eV Total energy + Delta-G solvation = -3184.767952 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.87306 -39.90737 -38.70711 -37.77810 -35.13683 -34.23192 -33.18352 -28.96624 -28.12718 -27.97329 -27.48891 -25.21577 -23.37326 -21.83690 -21.25125 -20.36391 -18.98810 -18.28256 -18.12587 -17.27955 -16.84364 -16.79448 -16.07568 -15.62416 -15.42034 -14.98471 -14.79131 -14.72529 -14.37169 -14.15343 -13.91032 -13.81152 -13.29723 -13.13165 -13.08236 -12.89445 -12.68752 -12.49129 -12.26006 -12.17785 -11.99460 -11.78840 -11.57208 -11.01528 -10.68302 -10.61800 -10.27442 -10.07503 -9.81086 -8.29985 -6.38273 0.35766 1.31247 1.35260 1.39387 1.50191 2.12131 2.36097 2.50902 3.04305 3.17247 3.44467 3.87451 3.98715 4.09680 4.21211 4.30142 4.32817 4.38347 4.51205 4.65557 4.69253 4.73164 4.74322 4.87031 4.88375 4.95147 5.01065 5.08153 5.21588 5.24749 5.31656 5.32749 5.47165 5.49300 5.67986 5.93853 6.26743 6.32428 6.70226 6.71513 6.97069 7.32501 8.85110 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.026128 B = 0.004898 C = 0.004712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.406870 B = 5715.555362 C = 5941.365625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.117 3.883 3 C -0.155 4.155 4 N -0.578 5.578 5 C 0.080 3.920 6 C 0.502 3.498 7 O -0.551 6.551 8 C 0.497 3.503 9 O -0.541 6.541 10 N -0.672 5.672 11 C 0.162 3.838 12 C -0.047 4.047 13 C -0.483 4.483 14 H 0.037 0.963 15 C 0.022 3.978 16 N -0.947 5.947 17 Si 0.936 3.064 18 H -0.266 1.266 19 H -0.304 1.304 20 H -0.232 1.232 21 C -0.156 4.156 22 C -0.184 4.184 23 H 0.090 0.910 24 H 0.048 0.952 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.040 0.960 28 H 0.092 0.908 29 H 0.076 0.924 30 H 0.058 0.942 31 H 0.102 0.898 32 H 0.077 0.923 33 H 0.413 0.587 34 H 0.049 0.951 35 H 0.077 0.923 36 H 0.264 0.736 37 H 0.107 0.893 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.253 9.421 4.167 20.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.016 3.984 3 C -0.213 4.213 4 N -0.312 5.312 5 C -0.061 4.061 6 C 0.285 3.715 7 O -0.429 6.429 8 C 0.278 3.722 9 O -0.420 6.420 10 N -0.322 5.322 11 C 0.038 3.962 12 C -0.048 4.048 13 C -0.520 4.520 14 H 0.055 0.945 15 C -0.176 4.176 16 N -0.586 5.586 17 Si 0.761 3.239 18 H -0.191 1.191 19 H -0.232 1.232 20 H -0.155 1.155 21 C -0.193 4.193 22 C -0.222 4.222 23 H 0.109 0.891 24 H 0.067 0.933 25 H 0.097 0.903 26 H 0.098 0.902 27 H 0.059 0.941 28 H 0.110 0.890 29 H 0.095 0.905 30 H 0.077 0.923 31 H 0.120 0.880 32 H 0.095 0.905 33 H 0.249 0.751 34 H 0.068 0.932 35 H 0.095 0.905 36 H 0.073 0.927 37 H 0.125 0.875 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -17.041 9.609 4.309 20.032 hybrid contribution 1.230 -0.234 -0.187 1.266 sum -15.811 9.375 4.122 18.838 Atomic orbital electron populations 1.22099 0.92059 1.02486 1.04333 1.21457 0.96325 0.93766 0.86898 1.22117 1.00720 0.94079 1.04359 1.47973 1.47333 1.25931 1.09940 1.22136 1.01676 1.01105 0.81189 1.20279 0.80252 0.82265 0.88729 1.90742 1.61580 1.62026 1.28523 1.20200 0.80831 0.82152 0.89048 1.90665 1.60754 1.61782 1.28832 1.45767 1.48432 1.21602 1.16385 1.21114 0.93788 0.94988 0.86268 1.19480 0.99520 0.88454 0.97380 1.20340 0.94127 1.45678 0.91897 0.94486 1.25830 0.96802 0.94043 1.00943 1.70047 1.05966 1.48939 1.33652 0.85939 0.78813 0.77857 0.81253 1.19108 1.23218 1.15521 1.22942 0.96392 0.98492 1.01513 1.23010 0.99654 1.04311 0.95200 0.89123 0.93277 0.90348 0.90237 0.94121 0.88973 0.90494 0.92309 0.88004 0.90478 0.75130 0.93234 0.90452 0.92682 0.87486 0.90019 0.90349 0.87490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.18 71.98 0.66 -1.53 16 2 C 0.12 2.47 3.24 44.99 0.15 2.61 16 3 C -0.15 -2.55 9.19 71.98 0.66 -1.89 16 4 N -0.58 -15.22 2.76 -824.17 -2.28 -17.50 16 5 C 0.08 1.69 8.22 127.77 1.05 2.74 16 6 C 0.50 17.50 7.71 87.27 0.67 18.17 16 7 O -0.55 -22.25 15.86 -3.24 -0.05 -22.30 16 8 C 0.50 18.52 7.68 87.27 0.67 19.19 16 9 O -0.54 -20.21 13.46 -3.25 -0.04 -20.25 16 10 N -0.67 -26.69 5.34 -464.40 -2.48 -29.17 16 11 C 0.16 6.43 5.36 86.38 0.46 6.89 16 12 C -0.05 -2.02 0.94 -52.93 -0.05 -2.07 16 13 C -0.48 -26.32 8.87 25.60 0.23 -26.09 16 14 H 0.04 2.27 8.06 -2.91 -0.02 2.25 16 15 C 0.02 1.24 5.47 84.65 0.46 1.70 16 16 N -0.95 -58.96 13.96 21.45 0.30 -58.66 16 17 Si 0.94 43.85 24.80 68.60 1.70 45.55 16 18 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 19 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 20 H -0.23 -9.85 5.69 99.48 0.57 -9.29 16 21 C -0.16 -5.59 9.93 30.62 0.30 -5.29 16 22 C -0.18 -6.88 7.39 30.62 0.23 -6.65 16 23 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 24 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.08 0.86 6.66 -2.39 -0.02 0.84 16 26 H 0.08 2.07 6.93 -2.39 -0.02 2.05 16 27 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 29 H 0.08 1.02 7.67 -2.39 -0.02 1.00 16 30 H 0.06 1.30 8.06 -2.39 -0.02 1.28 16 31 H 0.10 1.37 6.44 -2.39 -0.02 1.35 16 32 H 0.08 1.86 6.10 -2.39 -0.01 1.85 16 33 H 0.41 17.18 7.66 -92.71 -0.71 16.47 16 34 H 0.05 2.15 6.88 -2.39 -0.02 2.13 16 35 H 0.08 2.66 8.10 -2.39 -0.02 2.64 16 36 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 37 H 0.11 3.16 8.14 -2.38 -0.02 3.14 16 38 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 39 H 0.08 3.15 6.93 -2.39 -0.02 3.13 16 40 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 Total: -1.00 -68.79 324.06 2.83 -65.95 By element: Atomic # 1 Polarization: 28.40 SS G_CDS: 0.19 Total: 28.59 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: 5.50 Total: 7.79 kcal Atomic # 7 Polarization: -100.87 SS G_CDS: -4.45 Total: -105.33 kcal Atomic # 8 Polarization: -42.46 SS G_CDS: -0.10 Total: -42.55 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 1.70 Total: 45.55 kcal Total: -68.79 2.83 -65.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327746807.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.108 kcal (2) G-P(sol) polarization free energy of solvation -68.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds