Wall clock time and date at job start Mon Mar 30 2020 01:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.47017 * 2 1 4 4 H 1.09005 * 109.46976 * 304.99745 * 3 2 1 5 5 N 1.46491 * 109.47291 * 64.99629 * 3 2 1 6 6 C 1.34782 * 120.00162 * 204.81988 * 5 3 2 7 7 O 1.21348 * 119.99867 * 0.02562 * 6 5 3 8 8 C 1.49453 * 120.00031 * 180.02562 * 6 5 3 9 9 O 1.21347 * 119.99973 * 359.97438 * 8 6 5 10 10 N 1.34771 * 119.99751 * 180.02562 * 8 6 5 11 11 C 1.46508 * 119.99787 * 179.97438 * 10 8 6 12 12 C 1.53001 * 109.47052 * 179.97438 * 11 10 8 13 13 C 1.50700 * 109.47155 * 179.97438 * 12 11 10 14 14 H 1.07998 * 119.99846 * 0.02562 * 13 12 11 15 15 C 1.37870 * 120.00115 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00253 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00263 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.46637 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47475 * 119.99662 * 17 15 13 20 20 H 1.48496 * 109.46881 * 240.00066 * 17 15 13 21 21 C 1.53001 * 109.46850 * 184.99918 * 3 2 1 22 22 C 1.53006 * 117.49394 * 133.29035 * 21 3 2 23 23 C 1.52995 * 117.49955 * 64.63286 * 21 3 2 24 24 H 1.08998 * 109.46919 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46849 * 60.00071 * 1 2 3 26 26 H 1.08998 * 109.46990 * 300.00454 * 1 2 3 27 27 H 1.09004 * 109.47011 * 119.99182 * 2 1 3 28 28 H 1.09001 * 109.47602 * 239.99966 * 2 1 3 29 29 H 0.97004 * 120.00011 * 24.82542 * 5 3 2 30 30 H 0.96993 * 120.00308 * 359.97438 * 10 8 6 31 31 H 1.08993 * 109.46953 * 299.99547 * 11 10 8 32 32 H 1.09003 * 109.47178 * 59.99802 * 11 10 8 33 33 H 1.09002 * 109.46939 * 300.00332 * 12 11 10 34 34 H 1.09003 * 109.46934 * 60.00090 * 12 11 10 35 35 H 0.96994 * 120.00402 * 180.02562 * 16 15 13 36 36 H 1.08997 * 115.54953 * 278.95708 * 21 3 2 37 37 H 1.08998 * 117.50233 * 359.97438 * 22 21 3 38 38 H 1.09000 * 117.49810 * 145.01898 * 22 21 3 39 39 H 1.09003 * 117.49831 * 214.97979 * 23 21 3 40 40 H 1.08999 * 117.49930 * 359.97438 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8419 5 7 1.6524 2.0976 1.2517 6 6 1.5291 3.4389 1.3004 7 8 1.7387 4.1038 0.3072 8 6 1.1342 4.1071 2.5775 9 8 0.9241 3.4421 3.5705 10 7 1.0104 5.4482 2.6260 11 6 0.6227 6.1033 3.8778 12 6 0.5558 7.6165 3.6621 13 6 0.1564 8.2903 4.9496 14 1 -0.0305 7.6984 5.8334 15 6 0.0297 9.6623 4.9992 16 7 0.2577 10.3831 3.9231 17 14 -0.4647 10.4975 6.5953 18 1 -0.6615 9.4714 7.6505 19 1 0.6049 11.4392 7.0132 20 1 -1.7309 11.2458 6.3907 21 6 3.5648 1.4444 -0.1257 22 6 4.1888 2.4041 -1.1409 23 6 4.1674 0.8996 -1.4222 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8899 27 1 1.8933 -0.5137 0.8901 28 1 1.8934 -0.5138 -0.8900 29 1 1.4846 1.5660 2.0455 30 1 1.1779 5.9798 1.8322 31 1 -0.3546 5.7372 4.1919 32 1 1.3599 5.8788 4.6488 33 1 1.5334 7.9824 3.3481 34 1 -0.1811 7.8413 2.8910 35 1 0.1689 11.3483 3.9581 36 1 4.1130 1.2636 0.7989 37 1 3.5130 3.0339 -1.7194 38 1 5.1476 2.8545 -0.8843 39 1 5.1123 0.3608 -1.3506 40 1 3.4776 0.5396 -2.1855 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330689349.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:06 Heat of formation + Delta-G solvation = -68.803214 kcal Electronic energy + Delta-G solvation = -20079.003320 eV Core-core repulsion = 16893.890198 eV Total energy + Delta-G solvation = -3185.113122 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.53435 -38.82558 -37.56069 -35.39642 -34.78933 -32.90147 -32.33399 -29.80698 -27.47900 -25.44667 -23.55907 -22.76090 -21.97654 -21.05650 -20.52772 -20.20419 -18.17134 -17.09959 -16.46597 -15.91597 -15.75742 -15.16279 -14.83666 -14.70165 -14.43902 -14.17110 -13.92121 -13.47712 -13.08484 -12.88067 -12.70131 -12.32859 -11.78879 -11.68962 -11.56310 -11.48011 -11.23914 -11.16561 -11.07498 -10.67758 -10.64821 -10.40181 -10.19277 -9.77828 -9.42105 -9.28846 -9.15568 -8.68317 -8.41813 -6.10186 -4.13802 1.66052 2.55863 3.27965 3.35574 3.40128 3.46220 3.54090 3.95180 4.34340 4.40623 4.56298 4.73952 4.78049 4.82345 4.91852 4.95673 5.15064 5.26772 5.38230 5.46348 5.50953 5.63699 5.70935 5.77599 5.91433 5.96993 5.99633 6.19080 6.24558 6.27082 6.61058 6.70615 7.11591 7.48055 7.58224 7.70851 7.87483 7.97610 8.22426 8.36177 8.92129 9.51211 11.01359 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.035540 B = 0.003157 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.664245 B = 8867.923596 C = 9308.407701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.128 4.128 3 C 0.174 3.826 4 H 0.092 0.908 5 N -0.698 5.698 6 C 0.510 3.490 7 O -0.516 6.516 8 C 0.496 3.504 9 O -0.535 6.535 10 N -0.686 5.686 11 C 0.119 3.881 12 C 0.011 3.989 13 C -0.522 4.522 14 H 0.061 0.939 15 C 0.059 3.941 16 N -0.892 5.892 17 Si 0.897 3.103 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.283 1.283 21 C -0.170 4.170 22 C -0.167 4.167 23 C -0.175 4.175 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.411 0.589 30 H 0.410 0.590 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.025 0.975 34 H 0.025 0.975 35 H 0.262 0.738 36 H 0.105 0.895 37 H 0.100 0.900 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.764 -20.650 -10.337 23.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.166 4.166 3 C 0.070 3.930 4 H 0.110 0.890 5 N -0.352 5.352 6 C 0.291 3.709 7 O -0.391 6.391 8 C 0.276 3.724 9 O -0.413 6.413 10 N -0.337 5.337 11 C -0.003 4.003 12 C -0.027 4.027 13 C -0.561 4.561 14 H 0.079 0.921 15 C -0.143 4.143 16 N -0.531 5.531 17 Si 0.725 3.275 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.190 4.190 22 C -0.204 4.204 23 C -0.213 4.213 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.089 0.911 28 H 0.099 0.901 29 H 0.247 0.753 30 H 0.246 0.754 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.043 0.957 34 H 0.043 0.957 35 H 0.072 0.928 36 H 0.123 0.877 37 H 0.118 0.882 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.746 -20.425 -10.393 23.404 hybrid contribution -0.163 0.610 0.849 1.058 sum 4.583 -19.815 -9.543 22.466 Atomic orbital electron populations 1.21811 0.95109 1.01908 1.02529 1.21786 0.96479 0.94888 1.03410 1.20651 0.91863 0.93328 0.87189 0.89036 1.45785 1.68758 1.06439 1.14214 1.20428 0.78058 0.83200 0.89261 1.90741 1.48252 1.64001 1.36121 1.20032 0.79966 0.84065 0.88356 1.90723 1.50276 1.64235 1.36075 1.46229 1.65642 1.05624 1.16217 1.21926 0.99474 0.95859 0.83033 1.19361 0.98205 0.86761 0.98356 1.21053 1.47188 0.91826 0.96052 0.92118 1.25004 0.95184 0.97487 0.96631 1.69968 1.49005 1.06065 1.28041 0.86445 0.78168 0.79482 0.83398 1.19577 1.20918 1.20922 1.22692 0.95256 1.06232 0.94775 1.23001 1.02638 0.92279 1.02439 1.22939 1.02473 0.97303 0.98566 0.92349 0.92533 0.92248 0.91073 0.90104 0.75252 0.75407 0.91896 0.91912 0.95668 0.95667 0.92828 0.87652 0.88160 0.88959 0.88786 0.88722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.14 9.80 37.16 0.36 -0.78 16 2 C -0.13 -0.88 5.42 -26.73 -0.14 -1.03 16 3 C 0.17 1.64 2.16 -67.93 -0.15 1.49 16 4 H 0.09 0.99 7.38 -51.93 -0.38 0.61 16 5 N -0.70 -7.96 4.52 -54.23 -0.25 -8.20 16 6 C 0.51 7.57 7.85 -11.58 -0.09 7.48 16 7 O -0.52 -8.54 16.14 5.50 0.09 -8.45 16 8 C 0.50 8.57 7.89 -11.59 -0.09 8.48 16 9 O -0.53 -10.14 16.48 5.50 0.09 -10.05 16 10 N -0.69 -12.59 5.55 -60.73 -0.34 -12.92 16 11 C 0.12 2.50 5.61 -4.04 -0.02 2.47 16 12 C 0.01 0.26 5.09 -27.88 -0.14 0.12 16 13 C -0.52 -14.40 9.11 -34.44 -0.31 -14.72 16 14 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.89 -26.16 13.29 55.43 0.74 -25.42 16 17 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 18 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 C -0.17 -1.57 5.36 -90.62 -0.49 -2.05 16 22 C -0.17 -1.63 10.18 -26.69 -0.27 -1.90 16 23 C -0.18 -1.32 9.73 -26.70 -0.26 -1.58 16 24 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.50 7.75 -51.93 -0.40 0.09 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.08 0.47 7.45 -51.93 -0.39 0.08 16 29 H 0.41 4.27 8.07 -40.82 -0.33 3.95 16 30 H 0.41 7.19 7.94 -40.82 -0.32 6.87 16 31 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 32 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.26 7.23 8.31 -40.82 -0.34 6.90 16 36 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.10 1.09 8.08 -51.93 -0.42 0.67 16 38 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.09 0.62 7.88 -51.93 -0.41 0.21 16 LS Contribution 342.53 15.07 5.16 5.16 Total: -1.00 -30.73 342.53 -7.65 -38.38 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -6.42 Total: 5.67 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -1.70 Total: -0.44 kcal Atomic # 7 Polarization: -46.70 SS G_CDS: 0.15 Total: -46.55 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: 0.18 Total: -18.50 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.73 -7.65 -38.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330689349.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.422 kcal (2) G-P(sol) polarization free energy of solvation -30.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds