Wall clock time and date at job start Mon Mar 30 2020 01:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.47017 * 2 1 4 4 H 1.09005 * 109.46976 * 304.99745 * 3 2 1 5 5 N 1.46491 * 109.47291 * 64.99629 * 3 2 1 6 6 C 1.34782 * 120.00162 * 204.81988 * 5 3 2 7 7 O 1.21348 * 119.99867 * 0.02562 * 6 5 3 8 8 C 1.49453 * 120.00031 * 180.02562 * 6 5 3 9 9 O 1.21347 * 119.99973 * 359.97438 * 8 6 5 10 10 N 1.34771 * 119.99751 * 180.02562 * 8 6 5 11 11 C 1.46508 * 119.99787 * 179.97438 * 10 8 6 12 12 C 1.53001 * 109.47052 * 179.97438 * 11 10 8 13 13 C 1.50700 * 109.47155 * 179.97438 * 12 11 10 14 14 H 1.07998 * 119.99846 * 0.02562 * 13 12 11 15 15 C 1.37870 * 120.00115 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00253 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00263 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.46637 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47475 * 119.99662 * 17 15 13 20 20 H 1.48496 * 109.46881 * 240.00066 * 17 15 13 21 21 C 1.53001 * 109.46850 * 184.99918 * 3 2 1 22 22 C 1.53006 * 117.49394 * 133.29035 * 21 3 2 23 23 C 1.52995 * 117.49955 * 64.63286 * 21 3 2 24 24 H 1.08998 * 109.46919 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46849 * 60.00071 * 1 2 3 26 26 H 1.08998 * 109.46990 * 300.00454 * 1 2 3 27 27 H 1.09004 * 109.47011 * 119.99182 * 2 1 3 28 28 H 1.09001 * 109.47602 * 239.99966 * 2 1 3 29 29 H 0.97004 * 120.00011 * 24.82542 * 5 3 2 30 30 H 0.96993 * 120.00308 * 359.97438 * 10 8 6 31 31 H 1.08993 * 109.46953 * 299.99547 * 11 10 8 32 32 H 1.09003 * 109.47178 * 59.99802 * 11 10 8 33 33 H 1.09002 * 109.46939 * 300.00332 * 12 11 10 34 34 H 1.09003 * 109.46934 * 60.00090 * 12 11 10 35 35 H 0.96994 * 120.00402 * 180.02562 * 16 15 13 36 36 H 1.08997 * 115.54953 * 278.95708 * 21 3 2 37 37 H 1.08998 * 117.50233 * 359.97438 * 22 21 3 38 38 H 1.09000 * 117.49810 * 145.01898 * 22 21 3 39 39 H 1.09003 * 117.49831 * 214.97979 * 23 21 3 40 40 H 1.08999 * 117.49930 * 359.97438 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8419 5 7 1.6524 2.0976 1.2517 6 6 1.5291 3.4389 1.3004 7 8 1.7387 4.1038 0.3072 8 6 1.1342 4.1071 2.5775 9 8 0.9241 3.4421 3.5705 10 7 1.0104 5.4482 2.6260 11 6 0.6227 6.1033 3.8778 12 6 0.5558 7.6165 3.6621 13 6 0.1564 8.2903 4.9496 14 1 -0.0305 7.6984 5.8334 15 6 0.0297 9.6623 4.9992 16 7 0.2577 10.3831 3.9231 17 14 -0.4647 10.4975 6.5953 18 1 -0.6615 9.4714 7.6505 19 1 0.6049 11.4392 7.0132 20 1 -1.7309 11.2458 6.3907 21 6 3.5648 1.4444 -0.1257 22 6 4.1888 2.4041 -1.1409 23 6 4.1674 0.8996 -1.4222 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8899 27 1 1.8933 -0.5137 0.8901 28 1 1.8934 -0.5138 -0.8900 29 1 1.4846 1.5660 2.0455 30 1 1.1779 5.9798 1.8322 31 1 -0.3546 5.7372 4.1919 32 1 1.3599 5.8788 4.6488 33 1 1.5334 7.9824 3.3481 34 1 -0.1811 7.8413 2.8910 35 1 0.1689 11.3483 3.9581 36 1 4.1130 1.2636 0.7989 37 1 3.5130 3.0339 -1.7194 38 1 5.1476 2.8545 -0.8843 39 1 5.1123 0.3608 -1.3506 40 1 3.4776 0.5396 -2.1855 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330689349.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:05 Heat of formation + Delta-G solvation = -89.375226 kcal Electronic energy + Delta-G solvation = -20079.895390 eV Core-core repulsion = 16893.890198 eV Total energy + Delta-G solvation = -3186.005191 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.76897 -40.00521 -38.59062 -36.87461 -35.86384 -34.83875 -33.19578 -31.69576 -28.41762 -27.12687 -25.00886 -23.47972 -22.85317 -22.65250 -21.51970 -21.32591 -19.47736 -18.60093 -18.06316 -17.11866 -17.05328 -16.52217 -16.23151 -16.10565 -15.59171 -15.27918 -14.94321 -14.76038 -14.40428 -14.31670 -13.75675 -13.40667 -13.26071 -12.96874 -12.81242 -12.51564 -12.42181 -12.32602 -12.29961 -12.28639 -11.81181 -11.69067 -11.42842 -11.38154 -10.91537 -10.62994 -10.62530 -10.28145 -10.18930 -8.24244 -6.35585 0.34590 1.33249 1.42100 1.43493 1.56368 2.14256 2.39329 2.63721 2.93310 3.10745 3.46304 3.63871 3.88097 4.10367 4.12815 4.24149 4.32302 4.37982 4.43959 4.46708 4.77777 4.79978 4.82767 4.87913 5.02538 5.04589 5.07867 5.13813 5.17382 5.27821 5.39618 5.40821 5.43278 5.53708 5.75075 5.96478 6.12145 6.38140 6.73088 6.79921 6.95221 7.34167 8.88065 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.035540 B = 0.003157 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.664245 B = 8867.923596 C = 9308.407701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.119 4.119 3 C 0.172 3.828 4 H 0.078 0.922 5 N -0.680 5.680 6 C 0.515 3.485 7 O -0.536 6.536 8 C 0.498 3.502 9 O -0.550 6.550 10 N -0.689 5.689 11 C 0.138 3.862 12 C 0.019 3.981 13 C -0.544 4.544 14 H 0.065 0.935 15 C 0.004 3.996 16 N -0.929 5.929 17 Si 0.968 3.032 18 H -0.262 1.262 19 H -0.278 1.278 20 H -0.278 1.278 21 C -0.177 4.177 22 C -0.189 4.189 23 C -0.147 4.147 24 H 0.073 0.927 25 H 0.050 0.950 26 H 0.044 0.956 27 H 0.083 0.917 28 H 0.100 0.900 29 H 0.418 0.582 30 H 0.414 0.586 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.007 0.993 34 H 0.007 0.993 35 H 0.266 0.734 36 H 0.105 0.895 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.110 0.890 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.922 -22.532 -10.063 25.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.157 4.157 3 C 0.069 3.931 4 H 0.096 0.904 5 N -0.333 5.333 6 C 0.295 3.705 7 O -0.413 6.413 8 C 0.279 3.721 9 O -0.429 6.429 10 N -0.340 5.340 11 C 0.015 3.985 12 C -0.019 4.019 13 C -0.582 4.582 14 H 0.083 0.917 15 C -0.194 4.194 16 N -0.568 5.568 17 Si 0.793 3.207 18 H -0.186 1.186 19 H -0.204 1.204 20 H -0.204 1.204 21 C -0.196 4.196 22 C -0.227 4.227 23 C -0.185 4.185 24 H 0.092 0.908 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.101 0.899 28 H 0.119 0.881 29 H 0.256 0.744 30 H 0.250 0.750 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.025 0.975 34 H 0.026 0.974 35 H 0.074 0.926 36 H 0.123 0.877 37 H 0.102 0.898 38 H 0.107 0.893 39 H 0.128 0.872 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 4.911 -22.361 -10.127 25.034 hybrid contribution -0.196 1.135 0.714 1.356 sum 4.716 -21.226 -9.412 23.693 Atomic orbital electron populations 1.21823 0.95445 1.02615 1.01581 1.21778 0.96048 0.92938 1.04933 1.20853 0.92290 0.94556 0.85435 0.90409 1.45802 1.66970 1.05116 1.15397 1.19935 0.78497 0.84234 0.87816 1.90746 1.49665 1.64644 1.36254 1.20434 0.79015 0.83436 0.89188 1.90709 1.50781 1.64428 1.36961 1.46074 1.66176 1.06331 1.15445 1.21474 0.99419 0.93493 0.84101 1.19178 0.96425 0.89270 0.97014 1.21478 1.47194 0.92523 0.97052 0.91704 1.25926 0.95039 0.98265 1.00200 1.70083 1.49958 1.06503 1.30267 0.85344 0.77877 0.78385 0.79118 1.18582 1.20357 1.20352 1.22682 0.94806 1.06661 0.95494 1.22983 1.02362 0.93783 1.03528 1.23033 1.03062 0.95155 0.97222 0.90838 0.93070 0.93639 0.89886 0.88145 0.74438 0.74987 0.92034 0.92088 0.97463 0.97436 0.92557 0.87659 0.89823 0.89299 0.87199 0.87330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.99 9.80 71.98 0.71 -1.29 16 2 C -0.12 -1.33 5.42 30.60 0.17 -1.17 16 3 C 0.17 2.99 2.16 45.00 0.10 3.09 16 4 H 0.08 1.62 7.38 -2.38 -0.02 1.60 16 5 N -0.68 -14.81 4.52 -443.86 -2.01 -16.82 16 6 C 0.52 15.16 7.85 87.27 0.69 15.85 16 7 O -0.54 -17.85 16.14 -3.24 -0.05 -17.90 16 8 C 0.50 17.14 7.89 87.27 0.69 17.83 16 9 O -0.55 -20.53 16.48 -3.24 -0.05 -20.59 16 10 N -0.69 -25.57 5.55 -464.40 -2.58 -28.15 16 11 C 0.14 5.86 5.61 86.38 0.48 6.34 16 12 C 0.02 0.95 5.09 29.85 0.15 1.10 16 13 C -0.54 -30.23 9.11 25.60 0.23 -29.99 16 14 H 0.06 3.47 7.74 -2.91 -0.02 3.44 16 15 C 0.00 0.24 5.46 84.65 0.46 0.71 16 16 N -0.93 -55.11 13.29 21.44 0.28 -54.82 16 17 Si 0.97 43.53 29.54 68.60 2.03 45.56 16 18 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 19 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 20 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 21 C -0.18 -2.97 5.36 -10.79 -0.06 -3.03 16 22 C -0.19 -3.59 10.18 30.62 0.31 -3.28 16 23 C -0.15 -1.84 9.73 30.62 0.30 -1.55 16 24 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.04 0.70 7.75 -2.39 -0.02 0.68 16 27 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.10 0.79 7.45 -2.39 -0.02 0.78 16 29 H 0.42 8.09 8.07 -92.71 -0.75 7.35 16 30 H 0.41 14.86 7.94 -92.71 -0.74 14.13 16 31 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 32 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 33 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 34 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 35 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 36 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.08 1.86 8.08 -2.39 -0.02 1.84 16 38 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.11 1.08 7.88 -2.39 -0.02 1.06 16 Total: -1.00 -65.56 342.53 1.40 -64.16 By element: Atomic # 1 Polarization: 24.38 SS G_CDS: -0.44 Total: 23.94 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: 4.23 Total: 4.63 kcal Atomic # 7 Polarization: -95.49 SS G_CDS: -4.30 Total: -99.79 kcal Atomic # 8 Polarization: -38.38 SS G_CDS: -0.11 Total: -38.49 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -65.56 1.40 -64.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330689349.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.217 kcal (2) G-P(sol) polarization free energy of solvation -65.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds