Wall clock time and date at job start Mon Mar 30 2020 01:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.32986 * 120.00160 * 2 1 4 4 C 1.47103 * 120.00177 * 172.07280 * 3 2 1 5 5 O 1.21616 * 119.99751 * 354.00355 * 4 3 2 6 6 N 1.34781 * 119.99974 * 174.00313 * 4 3 2 7 7 C 1.46503 * 119.99745 * 180.02562 * 6 4 3 8 8 C 1.52996 * 109.46854 * 179.97438 * 7 6 4 9 9 H 1.09005 * 109.47344 * 64.99664 * 8 7 6 10 10 C 1.53001 * 109.47189 * 184.99841 * 8 7 6 11 11 O 1.42904 * 109.46801 * 54.99941 * 10 8 7 12 12 N 1.46500 * 109.47150 * 304.99770 * 8 7 6 13 13 C 1.36939 * 119.99973 * 154.99813 * 12 8 7 14 14 H 1.07997 * 119.99919 * 0.02562 * 13 12 8 15 15 C 1.38814 * 120.00213 * 179.97438 * 13 12 8 16 16 N 1.31625 * 119.99479 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00474 * 180.02562 * 15 13 12 18 18 H 1.48509 * 109.46905 * 60.00162 * 17 15 13 19 19 H 1.48494 * 109.47326 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47216 * 300.00449 * 17 15 13 21 21 C 1.50703 * 119.99729 * 179.72694 * 2 1 3 22 22 C 1.53002 * 117.50103 * 356.88798 * 21 2 1 23 23 C 1.52992 * 117.50222 * 288.26024 * 21 2 1 24 24 H 1.09002 * 109.47070 * 270.27133 * 1 2 3 25 25 H 1.08994 * 109.47489 * 30.27029 * 1 2 3 26 26 H 1.09004 * 109.47329 * 150.27476 * 1 2 3 27 27 H 1.08004 * 120.00071 * 352.07821 * 3 2 1 28 28 H 0.97000 * 120.00166 * 0.02562 * 6 4 3 29 29 H 1.09006 * 109.46854 * 299.99776 * 7 6 4 30 30 H 1.08994 * 109.47216 * 60.00027 * 7 6 4 31 31 H 1.08995 * 109.47415 * 174.99816 * 10 8 7 32 32 H 1.08997 * 109.47005 * 295.00282 * 10 8 7 33 33 H 0.96700 * 113.99557 * 180.02562 * 11 10 8 34 34 H 0.96994 * 120.00191 * 335.00365 * 12 8 7 35 35 H 0.96999 * 119.99728 * 180.02562 * 16 15 13 36 36 H 1.09003 * 115.54672 * 142.59104 * 21 2 1 37 37 H 1.08996 * 117.49858 * 359.97438 * 22 21 2 38 38 H 1.08997 * 117.49597 * 145.02127 * 22 21 2 39 39 H 1.09002 * 117.50462 * 214.97903 * 23 21 2 40 40 H 1.09007 * 117.49635 * 359.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6324 1.1578 0.1757 5 8 4.2186 0.1229 0.4295 6 7 4.3209 2.3102 0.0553 7 6 5.7755 2.3161 0.2298 8 6 6.3058 3.7389 0.0420 9 1 5.9177 4.3789 0.8344 10 6 7.8346 3.7252 0.1003 11 8 8.3397 2.7972 -0.8619 12 7 5.8714 4.2543 -1.2587 13 6 5.7602 5.6046 -1.4577 14 1 5.9931 6.2895 -0.6559 15 6 5.3490 6.0930 -2.6904 16 7 5.0656 5.2581 -3.6677 17 14 5.1980 7.9349 -2.9621 18 1 6.5191 8.5773 -2.7442 19 1 4.7439 8.1946 -4.3519 20 1 4.2105 8.4970 -2.0060 21 6 2.2604 -1.3052 0.0062 22 6 1.4401 -2.5942 0.0860 23 6 2.2454 -2.1234 1.2988 24 1 -0.3633 0.0049 1.0277 25 1 -0.3634 0.8875 -0.5180 26 1 -0.3634 -0.8925 -0.5096 27 1 1.6397 2.0826 -0.1289 28 1 3.8533 3.1357 -0.1467 29 1 6.0227 1.9651 1.2317 30 1 6.2327 1.6579 -0.5089 31 1 8.2157 4.7220 -0.1215 32 1 8.1575 3.4264 1.0976 33 1 9.3045 2.7359 -0.8804 34 1 5.6624 3.6391 -1.9789 35 1 4.7787 5.5994 -4.5291 36 1 3.1720 -1.3245 -0.5911 37 1 0.3554 -2.4982 0.1345 38 1 1.8118 -3.4618 -0.4589 39 1 3.1469 -2.6816 1.5518 40 1 1.6909 -1.7176 2.1450 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331684115.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:26 Heat of formation + Delta-G solvation = -35.466721 kcal Electronic energy + Delta-G solvation = -20495.942037 eV Core-core repulsion = 17312.274494 eV Total energy + Delta-G solvation = -3183.667543 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.52390 -37.74505 -36.88819 -34.80521 -33.37198 -33.27740 -31.30683 -28.66247 -27.77187 -25.22836 -23.66571 -22.95561 -22.26788 -20.37683 -20.04238 -18.37956 -17.48676 -16.75757 -16.54744 -15.92933 -15.18398 -14.97678 -14.36352 -14.26007 -13.82310 -13.58106 -13.36423 -13.17833 -12.98404 -12.79878 -12.63713 -12.22497 -11.93302 -11.52198 -11.36109 -11.15566 -10.87634 -10.82682 -10.71002 -10.52313 -10.28464 -10.11420 -9.76919 -9.36621 -9.18320 -8.96579 -8.81449 -8.34612 -7.02174 -5.80050 -3.10400 1.53393 3.39748 3.44706 3.46123 3.64281 3.80890 4.05810 4.53680 4.62546 4.89422 4.95239 5.06787 5.15079 5.20426 5.43047 5.47653 5.53029 5.55485 5.59796 5.62515 5.66726 5.82956 5.91409 5.93759 6.06069 6.09290 6.15415 6.34806 6.39785 6.49167 6.54544 6.68293 6.79957 7.05992 7.62774 8.13046 8.22945 8.36994 8.77016 9.49029 10.04974 10.41643 11.41476 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.019553 B = 0.004536 C = 0.003881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.693216 B = 6171.807192 C = 7212.756687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.019 4.019 3 C -0.213 4.213 4 C 0.540 3.460 5 O -0.551 6.551 6 N -0.710 5.710 7 C 0.121 3.879 8 C 0.165 3.835 9 H 0.065 0.935 10 C 0.060 3.940 11 O -0.560 6.560 12 N -0.713 5.713 13 C -0.249 4.249 14 H 0.069 0.931 15 C -0.007 4.007 16 N -0.926 5.926 17 Si 0.906 3.094 18 H -0.287 1.287 19 H -0.291 1.291 20 H -0.286 1.286 21 C -0.105 4.105 22 C -0.194 4.194 23 C -0.154 4.154 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.127 0.873 28 H 0.409 0.591 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.048 0.952 32 H 0.026 0.974 33 H 0.363 0.637 34 H 0.389 0.611 35 H 0.256 0.744 36 H 0.128 0.872 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.536 -10.000 9.517 14.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.021 4.021 3 C -0.233 4.233 4 C 0.329 3.671 5 O -0.432 6.432 6 N -0.361 5.361 7 C -0.004 4.004 8 C 0.054 3.946 9 H 0.082 0.918 10 C -0.022 4.022 11 O -0.363 6.363 12 N -0.354 5.354 13 C -0.380 4.380 14 H 0.087 0.913 15 C -0.204 4.204 16 N -0.573 5.573 17 Si 0.737 3.263 18 H -0.214 1.214 19 H -0.217 1.217 20 H -0.213 1.213 21 C -0.123 4.123 22 C -0.231 4.231 23 C -0.191 4.191 24 H 0.093 0.907 25 H 0.091 0.909 26 H 0.090 0.910 27 H 0.145 0.855 28 H 0.245 0.755 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.066 0.934 32 H 0.044 0.956 33 H 0.208 0.792 34 H 0.223 0.777 35 H 0.066 0.934 36 H 0.146 0.854 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.112 0.888 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.776 -10.587 9.562 15.391 hybrid contribution 0.428 1.604 -0.469 1.725 sum -5.348 -8.983 9.093 13.856 Atomic orbital electron populations 1.20987 0.91369 1.03313 1.02537 1.21700 0.94993 0.93314 0.92072 1.22482 0.93951 0.98615 1.08298 1.18490 0.87666 0.83557 0.77429 1.90717 1.71228 1.31672 1.49561 1.45917 1.08495 1.10813 1.70840 1.21488 0.79620 0.98477 1.00817 1.20594 0.90573 0.92223 0.91222 0.91757 1.23035 0.97850 0.92107 0.89190 1.86577 1.24622 1.63835 1.61275 1.42361 1.79443 1.04710 1.08920 1.19178 1.38785 0.83243 0.96785 0.91281 1.24742 1.02048 0.97495 0.96132 1.69675 1.51394 1.32971 1.03276 0.86298 0.77735 0.85338 0.76915 1.21352 1.21712 1.21255 1.21279 1.00284 0.88133 1.02576 1.23152 0.98422 0.98491 1.03035 1.22747 1.01919 1.02877 0.91550 0.90668 0.90950 0.90982 0.85469 0.75538 0.92345 0.90771 0.93388 0.95577 0.79219 0.77650 0.93390 0.85430 0.88809 0.88899 0.88773 0.89356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.20 9.45 36.01 0.34 -0.86 16 2 C -0.02 -0.25 5.80 -101.17 -0.59 -0.83 16 3 C -0.21 -3.11 9.63 -37.81 -0.36 -3.48 16 4 C 0.54 9.55 7.67 -12.66 -0.10 9.45 16 5 O -0.55 -10.83 13.45 5.26 0.07 -10.76 16 6 N -0.71 -12.68 5.38 -61.49 -0.33 -13.01 16 7 C 0.12 2.22 5.12 -4.04 -0.02 2.20 16 8 C 0.17 3.20 2.84 -67.93 -0.19 3.01 16 9 H 0.06 1.20 8.08 -51.93 -0.42 0.78 16 10 C 0.06 1.05 6.86 37.16 0.25 1.31 16 11 O -0.56 -10.22 12.64 -35.23 -0.45 -10.66 16 12 N -0.71 -17.20 4.51 -53.42 -0.24 -17.44 16 13 C -0.25 -6.59 9.93 -15.06 -0.15 -6.74 16 14 H 0.07 1.76 7.83 -52.49 -0.41 1.34 16 15 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 16 N -0.93 -27.43 13.06 55.49 0.72 -26.71 16 17 Si 0.91 21.74 29.55 -169.99 -5.02 16.72 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 21 C -0.10 -1.43 4.12 -91.77 -0.38 -1.81 16 22 C -0.19 -2.06 9.78 -26.73 -0.26 -2.32 16 23 C -0.15 -1.85 10.22 -26.73 -0.27 -2.12 16 24 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.07 0.64 8.06 -51.93 -0.42 0.22 16 26 H 0.07 0.61 6.44 -51.93 -0.33 0.27 16 27 H 0.13 1.64 8.04 -52.48 -0.42 1.21 16 28 H 0.41 7.33 8.12 -40.82 -0.33 6.99 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.07 1.54 7.39 -51.93 -0.38 1.16 16 31 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.36 4.79 9.12 45.56 0.42 5.20 16 34 H 0.39 10.46 7.80 -40.82 -0.32 10.14 16 35 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 36 H 0.13 2.09 6.62 -51.93 -0.34 1.74 16 37 H 0.09 0.85 6.35 -51.93 -0.33 0.52 16 38 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 335.98 15.07 5.06 5.06 Total: -1.00 -31.68 335.98 -7.40 -39.07 By element: Atomic # 1 Polarization: 25.61 SS G_CDS: -5.39 Total: 20.22 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -1.82 Total: -2.49 kcal Atomic # 7 Polarization: -57.31 SS G_CDS: 0.15 Total: -57.16 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: -0.37 Total: -21.43 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.68 -7.40 -39.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331684115.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.607 kcal (2) G-P(sol) polarization free energy of solvation -31.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds