Wall clock time and date at job start Mon Mar 30 2020 01:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.32986 * 120.00160 * 2 1 4 4 C 1.47103 * 120.00177 * 172.07280 * 3 2 1 5 5 O 1.21616 * 119.99751 * 354.00355 * 4 3 2 6 6 N 1.34781 * 119.99974 * 174.00313 * 4 3 2 7 7 C 1.46503 * 119.99745 * 180.02562 * 6 4 3 8 8 C 1.52996 * 109.46854 * 179.97438 * 7 6 4 9 9 H 1.09005 * 109.47344 * 64.99664 * 8 7 6 10 10 C 1.53001 * 109.47189 * 184.99841 * 8 7 6 11 11 O 1.42904 * 109.46801 * 54.99941 * 10 8 7 12 12 N 1.46500 * 109.47150 * 304.99770 * 8 7 6 13 13 C 1.36939 * 119.99973 * 154.99813 * 12 8 7 14 14 H 1.07997 * 119.99919 * 0.02562 * 13 12 8 15 15 C 1.38814 * 120.00213 * 179.97438 * 13 12 8 16 16 N 1.31625 * 119.99479 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00474 * 180.02562 * 15 13 12 18 18 H 1.48509 * 109.46905 * 60.00162 * 17 15 13 19 19 H 1.48494 * 109.47326 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47216 * 300.00449 * 17 15 13 21 21 C 1.50703 * 119.99729 * 179.72694 * 2 1 3 22 22 C 1.53002 * 117.50103 * 356.88798 * 21 2 1 23 23 C 1.52992 * 117.50222 * 288.26024 * 21 2 1 24 24 H 1.09002 * 109.47070 * 270.27133 * 1 2 3 25 25 H 1.08994 * 109.47489 * 30.27029 * 1 2 3 26 26 H 1.09004 * 109.47329 * 150.27476 * 1 2 3 27 27 H 1.08004 * 120.00071 * 352.07821 * 3 2 1 28 28 H 0.97000 * 120.00166 * 0.02562 * 6 4 3 29 29 H 1.09006 * 109.46854 * 299.99776 * 7 6 4 30 30 H 1.08994 * 109.47216 * 60.00027 * 7 6 4 31 31 H 1.08995 * 109.47415 * 174.99816 * 10 8 7 32 32 H 1.08997 * 109.47005 * 295.00282 * 10 8 7 33 33 H 0.96700 * 113.99557 * 180.02562 * 11 10 8 34 34 H 0.96994 * 120.00191 * 335.00365 * 12 8 7 35 35 H 0.96999 * 119.99728 * 180.02562 * 16 15 13 36 36 H 1.09003 * 115.54672 * 142.59104 * 21 2 1 37 37 H 1.08996 * 117.49858 * 359.97438 * 22 21 2 38 38 H 1.08997 * 117.49597 * 145.02127 * 22 21 2 39 39 H 1.09002 * 117.50462 * 214.97903 * 23 21 2 40 40 H 1.09007 * 117.49635 * 359.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6324 1.1578 0.1757 5 8 4.2186 0.1229 0.4295 6 7 4.3209 2.3102 0.0553 7 6 5.7755 2.3161 0.2298 8 6 6.3058 3.7389 0.0420 9 1 5.9177 4.3789 0.8344 10 6 7.8346 3.7252 0.1003 11 8 8.3397 2.7972 -0.8619 12 7 5.8714 4.2543 -1.2587 13 6 5.7602 5.6046 -1.4577 14 1 5.9931 6.2895 -0.6559 15 6 5.3490 6.0930 -2.6904 16 7 5.0656 5.2581 -3.6677 17 14 5.1980 7.9349 -2.9621 18 1 6.5191 8.5773 -2.7442 19 1 4.7439 8.1946 -4.3519 20 1 4.2105 8.4970 -2.0060 21 6 2.2604 -1.3052 0.0062 22 6 1.4401 -2.5942 0.0860 23 6 2.2454 -2.1234 1.2988 24 1 -0.3633 0.0049 1.0277 25 1 -0.3634 0.8875 -0.5180 26 1 -0.3634 -0.8925 -0.5096 27 1 1.6397 2.0826 -0.1289 28 1 3.8533 3.1357 -0.1467 29 1 6.0227 1.9651 1.2317 30 1 6.2327 1.6579 -0.5089 31 1 8.2157 4.7220 -0.1215 32 1 8.1575 3.4264 1.0976 33 1 9.3045 2.7359 -0.8804 34 1 5.6624 3.6391 -1.9789 35 1 4.7787 5.5994 -4.5291 36 1 3.1720 -1.3245 -0.5911 37 1 0.3554 -2.4982 0.1345 38 1 1.8118 -3.4618 -0.4589 39 1 3.1469 -2.6816 1.5518 40 1 1.6909 -1.7176 2.1450 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331684115.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:26 Heat of formation + Delta-G solvation = -59.338765 kcal Electronic energy + Delta-G solvation = -20496.977207 eV Core-core repulsion = 17312.274494 eV Total energy + Delta-G solvation = -3184.702713 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.84101 -38.98519 -38.24674 -36.35459 -35.10028 -34.30483 -33.08365 -30.27417 -28.93854 -26.56806 -25.61801 -24.08275 -23.17420 -21.66081 -21.61615 -19.69836 -19.18108 -18.17686 -17.94656 -17.29928 -16.62743 -16.31186 -15.94756 -15.68559 -15.25800 -14.96975 -14.78284 -14.56381 -14.22437 -13.99260 -13.77511 -13.60707 -13.13201 -13.02085 -12.73640 -12.63573 -12.40904 -12.28358 -12.09230 -11.90168 -11.74389 -11.65375 -11.27843 -10.97997 -10.73633 -10.49420 -10.04255 -9.64932 -9.00628 -7.89547 -5.19220 0.41675 1.50309 1.52289 1.58434 2.33012 2.47664 2.58752 3.08252 3.42554 3.60672 3.64923 3.89708 3.90717 4.04323 4.06805 4.22372 4.27531 4.44844 4.46563 4.55613 4.60707 4.69921 4.74041 4.85712 4.89153 4.98279 4.99489 5.10045 5.23293 5.26116 5.28920 5.47462 5.53399 5.61609 5.68149 6.28854 6.73039 7.05688 7.36797 7.38278 8.09143 8.35092 9.33216 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.019553 B = 0.004536 C = 0.003881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.693216 B = 6171.807192 C = 7212.756687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.002 3.998 3 C -0.245 4.245 4 C 0.533 3.467 5 O -0.578 6.578 6 N -0.713 5.713 7 C 0.133 3.867 8 C 0.161 3.839 9 H 0.078 0.922 10 C 0.065 3.935 11 O -0.584 6.584 12 N -0.722 5.722 13 C -0.240 4.240 14 H 0.081 0.919 15 C -0.070 4.070 16 N -0.968 5.968 17 Si 0.971 3.029 18 H -0.282 1.282 19 H -0.302 1.302 20 H -0.274 1.274 21 C -0.138 4.138 22 C -0.165 4.165 23 C -0.156 4.156 24 H 0.095 0.905 25 H 0.080 0.920 26 H 0.088 0.912 27 H 0.143 0.857 28 H 0.408 0.592 29 H 0.073 0.927 30 H 0.046 0.954 31 H 0.037 0.963 32 H 0.065 0.935 33 H 0.385 0.615 34 H 0.372 0.628 35 H 0.249 0.751 36 H 0.091 0.909 37 H 0.120 0.880 38 H 0.100 0.900 39 H 0.086 0.914 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.782 -10.053 11.054 16.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.000 4.000 3 C -0.265 4.265 4 C 0.324 3.676 5 O -0.461 6.461 6 N -0.363 5.363 7 C 0.008 3.992 8 C 0.052 3.948 9 H 0.096 0.904 10 C -0.016 4.016 11 O -0.391 6.391 12 N -0.362 5.362 13 C -0.372 4.372 14 H 0.099 0.901 15 C -0.263 4.263 16 N -0.618 5.618 17 Si 0.800 3.200 18 H -0.208 1.208 19 H -0.228 1.228 20 H -0.200 1.200 21 C -0.156 4.156 22 C -0.202 4.202 23 C -0.193 4.193 24 H 0.114 0.886 25 H 0.099 0.901 26 H 0.107 0.893 27 H 0.160 0.840 28 H 0.244 0.756 29 H 0.092 0.908 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.083 0.917 33 H 0.233 0.767 34 H 0.203 0.797 35 H 0.057 0.943 36 H 0.109 0.891 37 H 0.138 0.862 38 H 0.119 0.881 39 H 0.104 0.896 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -6.988 -10.635 11.161 16.926 hybrid contribution 0.865 1.472 -0.870 1.917 sum -6.123 -9.162 10.291 15.078 Atomic orbital electron populations 1.21097 0.88223 1.04582 1.04131 1.22124 0.97032 0.92310 0.88528 1.22478 0.92159 1.00152 1.11752 1.19058 0.89048 0.82894 0.76613 1.90698 1.72117 1.32369 1.50934 1.45934 1.08224 1.11000 1.71116 1.21288 0.79984 0.97281 1.00601 1.20845 0.92046 0.92636 0.89315 0.90400 1.22876 0.96037 0.91666 0.91017 1.86531 1.26886 1.63871 1.61798 1.42460 1.79897 1.03768 1.10062 1.19599 1.36392 0.84436 0.96736 0.90097 1.25502 1.03117 1.01448 0.96236 1.69851 1.53727 1.34695 1.03513 0.85257 0.77864 0.80629 0.76207 1.20819 1.22827 1.20042 1.21197 1.00435 0.90120 1.03844 1.23265 0.99431 0.96517 1.00954 1.22800 1.02303 1.02411 0.91762 0.88616 0.90076 0.89348 0.83968 0.75649 0.90848 0.93586 0.94496 0.91675 0.76703 0.79665 0.94265 0.89056 0.86229 0.88143 0.89562 0.88245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.97 9.45 71.24 0.67 -1.30 16 2 C 0.00 0.05 5.80 -17.62 -0.10 -0.05 16 3 C -0.24 -7.15 9.63 23.43 0.23 -6.92 16 4 C 0.53 19.36 7.67 86.57 0.66 20.02 16 5 O -0.58 -23.57 13.45 -4.08 -0.05 -23.63 16 6 N -0.71 -25.99 5.38 -466.70 -2.51 -28.51 16 7 C 0.13 4.95 5.12 86.38 0.44 5.39 16 8 C 0.16 6.14 2.84 44.99 0.13 6.27 16 9 H 0.08 2.77 8.08 -2.38 -0.02 2.75 16 10 C 0.06 2.20 6.86 71.98 0.49 2.69 16 11 O -0.58 -20.99 12.64 -148.98 -1.88 -22.87 16 12 N -0.72 -35.14 4.51 -322.94 -1.46 -36.59 16 13 C -0.24 -12.64 9.93 84.03 0.83 -11.81 16 14 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 15 C -0.07 -3.92 5.50 84.86 0.47 -3.46 16 16 N -0.97 -58.68 13.06 21.65 0.28 -58.39 16 17 Si 0.97 44.88 29.55 68.60 2.03 46.91 16 18 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 19 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 20 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 21 C -0.14 -3.70 4.12 -11.54 -0.05 -3.75 16 22 C -0.17 -3.11 9.78 30.60 0.30 -2.81 16 23 C -0.16 -3.56 10.22 30.59 0.31 -3.24 16 24 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.08 1.20 8.06 -2.39 -0.02 1.18 16 26 H 0.09 1.14 6.44 -2.38 -0.02 1.13 16 27 H 0.14 3.60 8.04 -2.91 -0.02 3.57 16 28 H 0.41 14.92 8.12 -92.71 -0.75 14.17 16 29 H 0.07 2.49 8.14 -2.38 -0.02 2.47 16 30 H 0.05 1.97 7.39 -2.39 -0.02 1.95 16 31 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.39 9.73 9.12 -74.06 -0.68 9.06 16 34 H 0.37 20.57 7.80 -92.71 -0.72 19.85 16 35 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 36 H 0.09 3.14 6.62 -2.39 -0.02 3.13 16 37 H 0.12 1.66 6.35 -2.39 -0.02 1.64 16 38 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.10 2.03 8.14 -2.38 -0.02 2.01 16 Total: -1.00 -69.76 335.98 -0.29 -70.06 By element: Atomic # 1 Polarization: 53.09 SS G_CDS: -1.09 Total: 52.00 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: 4.39 Total: 1.03 kcal Atomic # 7 Polarization: -119.81 SS G_CDS: -3.69 Total: -123.49 kcal Atomic # 8 Polarization: -44.56 SS G_CDS: -1.94 Total: -46.50 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -69.76 -0.29 -70.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331684115.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.717 kcal (2) G-P(sol) polarization free energy of solvation -69.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds