Wall clock time and date at job start Mon Mar 30 2020 01:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47613 * 2 1 4 4 H 1.08998 * 109.46612 * 55.00219 * 3 2 1 5 5 C 1.50690 * 109.47321 * 175.00347 * 3 2 1 6 6 H 1.08001 * 120.00272 * 120.00869 * 5 3 2 7 7 C 1.37878 * 120.00365 * 299.99777 * 5 3 2 8 8 N 1.31521 * 119.99550 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00337 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.46947 * 60.00309 * 9 7 5 11 11 H 1.48499 * 109.47205 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47224 * 300.00697 * 9 7 5 13 13 N 1.46504 * 109.47109 * 295.00745 * 3 2 1 14 14 C 1.34774 * 120.00114 * 84.99206 * 13 3 2 15 15 O 1.21280 * 120.00095 * 0.02562 * 14 13 3 16 16 C 1.50696 * 119.99874 * 179.97438 * 14 13 3 17 17 H 1.08998 * 108.56910 * 297.93768 * 16 14 13 18 18 C 1.51783 * 108.61475 * 180.02562 * 16 14 13 19 19 C 1.52990 * 110.87827 * 172.02609 * 18 16 14 20 20 N 1.47191 * 108.66761 * 86.46469 * 19 18 16 21 21 C 1.33374 * 120.43061 * 288.05417 * 20 19 18 22 22 O 1.21277 * 119.89483 * 180.27857 * 21 20 19 23 23 C 1.51426 * 120.21515 * 0.29369 * 21 20 19 24 24 C 1.51711 * 108.48790 * 55.84452 * 16 14 13 25 25 H 1.08996 * 109.47574 * 59.99500 * 1 2 3 26 26 H 1.08999 * 109.46987 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46402 * 299.99650 * 1 2 3 28 28 H 1.09003 * 109.46915 * 240.00274 * 2 1 3 29 29 H 1.08996 * 109.47574 * 120.00500 * 2 1 3 30 30 H 0.96998 * 119.99512 * 179.97438 * 8 7 5 31 31 H 0.96998 * 119.99771 * 265.00026 * 13 3 2 32 32 H 1.09002 * 109.19675 * 51.66934 * 18 16 14 33 33 H 1.08996 * 109.16141 * 292.36172 * 18 16 14 34 34 H 1.09002 * 109.60625 * 326.71015 * 19 18 16 35 35 H 1.08995 * 109.60744 * 206.21933 * 19 18 16 36 36 H 0.96992 * 119.78826 * 108.02775 * 20 19 18 37 37 H 1.08992 * 109.63891 * 190.89965 * 23 21 20 38 38 H 1.09004 * 109.63366 * 311.50539 * 23 21 20 39 39 H 1.09002 * 109.23518 * 67.52687 * 24 16 14 40 40 H 1.09005 * 109.19750 * 308.18984 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9814 0.8418 5 6 3.5419 1.4442 0.1237 6 1 4.1472 1.8889 -0.6523 7 6 4.1434 0.8783 1.2278 8 7 3.4063 0.3365 2.1728 9 14 6.0051 0.8798 1.3809 10 1 6.5006 2.2797 1.3805 11 1 6.3980 0.2165 2.6501 12 1 6.5967 0.1451 0.2339 13 7 1.6524 2.0976 -1.2518 14 6 0.4351 2.6644 -1.3668 15 8 -0.3392 2.6327 -0.4339 16 6 0.0366 3.3387 -2.6542 17 1 0.7143 4.1735 -2.8330 18 6 -1.3718 3.8831 -2.5003 19 6 -1.7567 4.7475 -3.7024 20 7 -2.3033 3.8751 -4.7544 21 6 -1.5006 3.0615 -5.4418 22 8 -1.9605 2.3504 -6.3100 23 6 -0.0169 3.0224 -5.1417 24 6 0.1871 2.3406 -3.7867 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3632 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.8295 -0.0619 2.9493 31 1 2.2718 2.1232 -1.9978 32 1 -1.4261 4.4857 -1.5936 33 1 -2.0704 3.0503 -2.4194 34 1 -0.8741 5.2650 -4.0784 35 1 -2.5105 5.4757 -3.4030 36 1 -3.2534 3.8916 -4.9486 37 1 0.4990 2.4568 -5.9175 38 1 0.3758 4.0386 -5.1028 39 1 -0.5532 1.5492 -3.6687 40 1 1.1857 1.9051 -3.7504 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347691887.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:32 Heat of formation + Delta-G solvation = -95.299181 kcal Electronic energy + Delta-G solvation = -21379.587038 eV Core-core repulsion = 18193.324965 eV Total energy + Delta-G solvation = -3186.262073 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.49977 -39.09286 -36.51703 -35.04543 -34.04281 -32.31872 -31.14762 -30.83370 -27.65268 -26.42652 -24.17287 -23.12527 -21.71978 -19.96606 -19.83557 -19.25662 -17.62770 -17.24485 -16.62785 -15.76563 -15.40605 -15.09192 -14.55948 -14.39716 -14.09881 -13.71824 -13.59801 -13.17993 -12.75161 -12.59914 -12.36832 -12.11585 -11.68825 -11.60392 -11.46408 -11.24742 -11.02483 -10.87023 -10.81704 -10.76538 -10.34128 -10.18945 -9.87830 -9.64095 -9.28641 -9.07337 -8.91495 -8.51315 -7.84006 -6.14271 -4.24035 2.56123 3.18492 3.23558 3.29426 3.29940 3.34804 3.98736 4.34000 4.36261 4.58741 4.71173 4.88856 5.04087 5.16587 5.17836 5.23247 5.30687 5.46362 5.58728 5.68526 5.89798 5.94502 6.12684 6.27624 6.37936 6.44235 6.64679 6.66165 7.02505 7.11784 7.17780 7.34935 7.43796 7.59674 7.71112 7.88090 8.12810 8.16620 8.64750 8.75394 9.11429 9.43605 10.90907 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.030650 B = 0.004507 C = 0.004359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.320099 B = 6211.188336 C = 6421.809450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.048 0.952 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.707 5.707 14 C 0.502 3.498 15 O -0.548 6.548 16 C -0.111 4.111 17 H 0.093 0.907 18 C -0.122 4.122 19 C 0.108 3.892 20 N -0.724 5.724 21 C 0.519 3.481 22 O -0.558 6.558 23 C -0.137 4.137 24 C -0.106 4.106 25 H 0.038 0.962 26 H 0.022 0.978 27 H 0.049 0.951 28 H 0.030 0.970 29 H 0.098 0.902 30 H 0.265 0.735 31 H 0.387 0.613 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.399 0.601 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.072 0.928 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.290 8.290 -11.200 15.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.066 0.934 5 C -0.574 4.574 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.355 5.355 14 C 0.286 3.714 15 O -0.427 6.427 16 C -0.133 4.133 17 H 0.111 0.889 18 C -0.161 4.161 19 C -0.016 4.016 20 N -0.376 5.376 21 C 0.306 3.694 22 O -0.436 6.436 23 C -0.177 4.177 24 C -0.144 4.144 25 H 0.057 0.943 26 H 0.041 0.959 27 H 0.068 0.932 28 H 0.049 0.951 29 H 0.117 0.883 30 H 0.075 0.925 31 H 0.220 0.780 32 H 0.107 0.893 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.107 0.893 36 H 0.234 0.766 37 H 0.118 0.882 38 H 0.110 0.890 39 H 0.091 0.909 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.818 7.776 -10.709 14.888 hybrid contribution 1.000 0.003 -0.168 1.014 sum -5.818 7.779 -10.877 14.584 Atomic orbital electron populations 1.21833 0.98392 0.98008 1.01157 1.21931 0.92560 0.99871 1.02254 1.18767 0.94126 0.89161 0.81081 0.93380 1.21190 0.90747 1.39153 1.06276 0.92193 1.24883 0.98558 0.94787 0.95396 1.69887 1.35218 1.37468 1.09357 0.86526 0.84907 0.78290 0.77474 1.20213 1.21142 1.20163 1.46526 1.14663 1.55864 1.18450 1.20295 0.82773 0.79463 0.88822 1.90668 1.51454 1.59896 1.40687 1.21037 0.98712 0.99076 0.94454 0.88936 1.21627 0.95621 1.00717 0.98135 1.21855 1.00058 0.92329 0.87374 1.46000 1.11486 1.42101 1.38049 1.20633 0.89893 0.78678 0.80244 1.90744 1.77573 1.42252 1.33043 1.22001 0.92507 1.03516 0.99667 1.21224 1.03983 0.97961 0.91240 0.94314 0.95925 0.93209 0.95077 0.88345 0.92507 0.78026 0.89289 0.90557 0.90434 0.89256 0.76568 0.88179 0.89043 0.90948 0.89690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.52 37.16 0.32 -2.69 16 2 C -0.13 -3.03 5.45 -26.73 -0.15 -3.18 16 3 C 0.27 6.55 2.24 -69.08 -0.15 6.39 16 4 H 0.05 1.36 7.58 -51.93 -0.39 0.97 16 5 C -0.54 -13.69 8.73 -34.44 -0.30 -13.99 16 6 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.30 11.29 55.43 0.63 -23.67 16 9 Si 0.90 20.19 29.54 -169.99 -5.02 15.17 16 10 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 11 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16 12 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 13 N -0.71 -13.57 4.82 -54.94 -0.26 -13.84 16 14 C 0.50 8.93 5.70 -10.99 -0.06 8.86 16 15 O -0.55 -11.80 12.89 5.56 0.07 -11.73 16 16 C -0.11 -1.35 2.05 -93.04 -0.19 -1.54 16 17 H 0.09 0.92 7.88 -51.93 -0.41 0.51 16 18 C -0.12 -1.34 4.38 -27.35 -0.12 -1.46 16 19 C 0.11 0.81 6.47 -3.67 -0.02 0.78 16 20 N -0.72 -6.75 5.27 -59.90 -0.32 -7.07 16 21 C 0.52 6.28 7.06 -11.25 -0.08 6.20 16 22 O -0.56 -9.13 17.92 5.56 0.10 -9.03 16 23 C -0.14 -1.33 5.57 -27.50 -0.15 -1.48 16 24 C -0.11 -1.20 4.86 -27.36 -0.13 -1.33 16 25 H 0.04 0.82 5.65 -51.93 -0.29 0.53 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 1.17 7.85 -51.93 -0.41 0.76 16 28 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.10 2.61 5.95 -51.93 -0.31 2.30 16 30 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 31 H 0.39 6.41 7.53 -40.82 -0.31 6.10 16 32 H 0.09 1.04 7.75 -51.93 -0.40 0.64 16 33 H 0.08 0.98 8.05 -51.93 -0.42 0.56 16 34 H 0.08 0.48 6.71 -51.93 -0.35 0.13 16 35 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.40 3.32 8.91 -40.82 -0.36 2.96 16 37 H 0.10 0.95 8.13 -51.93 -0.42 0.52 16 38 H 0.09 0.67 6.77 -51.93 -0.35 0.32 16 39 H 0.07 0.96 7.86 -51.93 -0.41 0.55 16 40 H 0.08 0.93 6.96 -51.93 -0.36 0.56 16 LS Contribution 313.40 15.07 4.72 4.72 Total: -1.00 -31.97 313.40 -7.23 -39.19 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -6.00 Total: 8.02 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: -1.14 Total: -1.76 kcal Atomic # 7 Polarization: -44.63 SS G_CDS: 0.05 Total: -44.58 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: 0.17 Total: -20.76 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.97 -7.23 -39.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347691887.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.106 kcal (2) G-P(sol) polarization free energy of solvation -31.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds