Wall clock time and date at job start Mon Mar 30 2020 01:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47613 * 2 1 4 4 H 1.08998 * 109.46612 * 55.00219 * 3 2 1 5 5 C 1.50690 * 109.47321 * 175.00347 * 3 2 1 6 6 H 1.08001 * 120.00272 * 120.00869 * 5 3 2 7 7 C 1.37878 * 120.00365 * 299.99777 * 5 3 2 8 8 N 1.31521 * 119.99550 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00337 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.46947 * 60.00309 * 9 7 5 11 11 H 1.48499 * 109.47205 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47224 * 300.00697 * 9 7 5 13 13 N 1.46504 * 109.47109 * 295.00745 * 3 2 1 14 14 C 1.34774 * 120.00114 * 84.99206 * 13 3 2 15 15 O 1.21280 * 120.00095 * 0.02562 * 14 13 3 16 16 C 1.50696 * 119.99874 * 179.97438 * 14 13 3 17 17 H 1.08998 * 108.56910 * 297.93768 * 16 14 13 18 18 C 1.51783 * 108.61475 * 180.02562 * 16 14 13 19 19 C 1.52990 * 110.87827 * 172.02609 * 18 16 14 20 20 N 1.47191 * 108.66761 * 86.46469 * 19 18 16 21 21 C 1.33374 * 120.43061 * 288.05417 * 20 19 18 22 22 O 1.21277 * 119.89483 * 180.27857 * 21 20 19 23 23 C 1.51426 * 120.21515 * 0.29369 * 21 20 19 24 24 C 1.51711 * 108.48790 * 55.84452 * 16 14 13 25 25 H 1.08996 * 109.47574 * 59.99500 * 1 2 3 26 26 H 1.08999 * 109.46987 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46402 * 299.99650 * 1 2 3 28 28 H 1.09003 * 109.46915 * 240.00274 * 2 1 3 29 29 H 1.08996 * 109.47574 * 120.00500 * 2 1 3 30 30 H 0.96998 * 119.99512 * 179.97438 * 8 7 5 31 31 H 0.96998 * 119.99771 * 265.00026 * 13 3 2 32 32 H 1.09002 * 109.19675 * 51.66934 * 18 16 14 33 33 H 1.08996 * 109.16141 * 292.36172 * 18 16 14 34 34 H 1.09002 * 109.60625 * 326.71015 * 19 18 16 35 35 H 1.08995 * 109.60744 * 206.21933 * 19 18 16 36 36 H 0.96992 * 119.78826 * 108.02775 * 20 19 18 37 37 H 1.08992 * 109.63891 * 190.89965 * 23 21 20 38 38 H 1.09004 * 109.63366 * 311.50539 * 23 21 20 39 39 H 1.09002 * 109.23518 * 67.52687 * 24 16 14 40 40 H 1.09005 * 109.19750 * 308.18984 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9814 0.8418 5 6 3.5419 1.4442 0.1237 6 1 4.1472 1.8889 -0.6523 7 6 4.1434 0.8783 1.2278 8 7 3.4063 0.3365 2.1728 9 14 6.0051 0.8798 1.3809 10 1 6.5006 2.2797 1.3805 11 1 6.3980 0.2165 2.6501 12 1 6.5967 0.1451 0.2339 13 7 1.6524 2.0976 -1.2518 14 6 0.4351 2.6644 -1.3668 15 8 -0.3392 2.6327 -0.4339 16 6 0.0366 3.3387 -2.6542 17 1 0.7143 4.1735 -2.8330 18 6 -1.3718 3.8831 -2.5003 19 6 -1.7567 4.7475 -3.7024 20 7 -2.3033 3.8751 -4.7544 21 6 -1.5006 3.0615 -5.4418 22 8 -1.9605 2.3504 -6.3100 23 6 -0.0169 3.0224 -5.1417 24 6 0.1871 2.3406 -3.7867 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3632 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.8295 -0.0619 2.9493 31 1 2.2718 2.1232 -1.9978 32 1 -1.4261 4.4857 -1.5936 33 1 -2.0704 3.0503 -2.4194 34 1 -0.8741 5.2650 -4.0784 35 1 -2.5105 5.4757 -3.4030 36 1 -3.2534 3.8916 -4.9486 37 1 0.4990 2.4568 -5.9175 38 1 0.3758 4.0386 -5.1028 39 1 -0.5532 1.5492 -3.6687 40 1 1.1857 1.9051 -3.7504 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347691887.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:32 Heat of formation + Delta-G solvation = -119.135076 kcal Electronic energy + Delta-G solvation = -21380.620640 eV Core-core repulsion = 18193.324965 eV Total energy + Delta-G solvation = -3187.295675 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.54294 -40.41547 -37.66292 -36.73892 -35.03069 -34.13828 -32.65425 -32.00509 -29.20680 -27.71935 -25.06064 -24.97645 -23.00124 -21.51719 -20.83648 -20.61200 -19.00752 -18.18461 -17.88553 -17.17483 -17.14025 -16.33781 -16.16534 -15.59357 -15.11601 -15.04518 -14.67349 -14.53047 -14.35475 -13.71670 -13.55398 -13.39758 -13.19069 -13.07723 -12.86560 -12.76939 -12.62768 -12.42665 -12.17066 -12.03254 -11.83056 -11.62786 -11.57082 -11.03079 -10.83837 -10.55643 -10.39687 -10.08436 -9.55820 -8.13593 -6.30783 1.46958 1.48123 1.55860 1.64919 1.94056 2.38466 2.43981 2.70257 3.16034 3.52662 3.73914 3.81614 3.89626 4.25537 4.36442 4.47365 4.49084 4.52083 4.56567 4.57562 4.72606 4.77702 4.80760 5.04838 5.08107 5.09679 5.20472 5.26391 5.38916 5.44541 5.58330 5.67878 5.81874 5.92089 5.96956 6.19913 6.31570 6.78394 7.07270 7.27629 7.37279 7.67691 8.91368 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.030650 B = 0.004507 C = 0.004359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.320099 B = 6211.188336 C = 6421.809450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.121 4.121 3 C 0.279 3.721 4 H -0.003 1.003 5 C -0.546 4.546 6 H 0.073 0.927 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.968 3.032 10 H -0.270 1.270 11 H -0.289 1.289 12 H -0.265 1.265 13 N -0.705 5.705 14 C 0.496 3.504 15 O -0.590 6.590 16 C -0.097 4.097 17 H 0.130 0.870 18 C -0.120 4.120 19 C 0.115 3.885 20 N -0.715 5.715 21 C 0.511 3.489 22 O -0.609 6.609 23 C -0.127 4.127 24 C -0.100 4.100 25 H 0.044 0.956 26 H 0.040 0.960 27 H 0.025 0.975 28 H 0.039 0.961 29 H 0.069 0.931 30 H 0.263 0.737 31 H 0.403 0.597 32 H 0.081 0.919 33 H 0.050 0.950 34 H 0.106 0.894 35 H 0.118 0.882 36 H 0.403 0.597 37 H 0.104 0.896 38 H 0.128 0.872 39 H 0.046 0.954 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.189 9.983 -13.098 17.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.160 4.160 3 C 0.175 3.825 4 H 0.015 0.985 5 C -0.584 4.584 6 H 0.091 0.909 7 C -0.185 4.185 8 N -0.555 5.555 9 Si 0.793 3.207 10 H -0.195 1.195 11 H -0.215 1.215 12 H -0.190 1.190 13 N -0.354 5.354 14 C 0.283 3.717 15 O -0.471 6.471 16 C -0.118 4.118 17 H 0.147 0.853 18 C -0.159 4.159 19 C -0.008 4.008 20 N -0.365 5.365 21 C 0.299 3.701 22 O -0.492 6.492 23 C -0.166 4.166 24 C -0.138 4.138 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.044 0.956 28 H 0.058 0.942 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.238 0.762 32 H 0.099 0.901 33 H 0.068 0.932 34 H 0.124 0.876 35 H 0.136 0.864 36 H 0.239 0.761 37 H 0.123 0.877 38 H 0.146 0.854 39 H 0.065 0.935 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.721 9.511 -12.629 16.813 hybrid contribution 0.586 -0.502 0.488 0.913 sum -5.134 9.010 -12.141 15.967 Atomic orbital electron populations 1.21665 0.97189 0.98854 1.00211 1.21785 0.93527 0.99587 1.01110 1.18300 0.93497 0.88928 0.81786 0.98468 1.21569 0.91534 1.38763 1.06578 0.90872 1.25760 1.03131 0.94461 0.95121 1.70051 1.37082 1.38433 1.09908 0.85459 0.79348 0.78477 0.77407 1.19500 1.21525 1.19022 1.46288 1.15844 1.56015 1.17292 1.21344 0.81491 0.78491 0.90377 1.90655 1.52429 1.61170 1.42853 1.21076 1.00124 0.99658 0.90965 0.85252 1.21611 0.94242 1.00291 0.99739 1.21999 1.02180 0.91490 0.85181 1.46046 1.11720 1.41367 1.37400 1.21115 0.91099 0.78207 0.79690 1.90722 1.78574 1.44416 1.35495 1.21974 0.90930 1.05497 0.98238 1.21154 1.03601 0.97192 0.91891 0.93728 0.94080 0.95583 0.94235 0.91253 0.92737 0.76177 0.90070 0.93164 0.87618 0.86352 0.76093 0.87732 0.85426 0.93534 0.88927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.49 8.52 71.98 0.61 -4.87 16 2 C -0.12 -5.90 5.45 30.59 0.17 -5.73 16 3 C 0.28 13.77 2.24 44.24 0.10 13.87 16 4 H 0.00 -0.15 7.58 -2.39 -0.02 -0.17 16 5 C -0.55 -27.89 8.73 25.60 0.22 -27.67 16 6 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 7 C 0.02 0.80 5.29 84.65 0.45 1.25 16 8 N -0.92 -51.81 11.29 21.45 0.24 -51.57 16 9 Si 0.97 41.11 29.54 68.60 2.03 43.13 16 10 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 11 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 12 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 13 N -0.71 -26.64 4.82 -446.11 -2.15 -28.79 16 14 C 0.50 17.34 5.70 87.66 0.50 17.84 16 15 O -0.59 -25.95 12.89 -3.03 -0.04 -25.99 16 16 C -0.10 -2.11 2.05 -12.36 -0.03 -2.13 16 17 H 0.13 1.95 7.88 -2.39 -0.02 1.93 16 18 C -0.12 -2.37 4.38 30.19 0.13 -2.24 16 19 C 0.11 1.27 6.47 86.24 0.56 1.82 16 20 N -0.72 -11.51 5.27 -462.60 -2.44 -13.95 16 21 C 0.51 11.34 7.06 88.11 0.62 11.97 16 22 O -0.61 -19.60 17.92 -3.02 -0.05 -19.65 16 23 C -0.13 -2.03 5.57 30.10 0.17 -1.87 16 24 C -0.10 -2.03 4.86 30.19 0.15 -1.88 16 25 H 0.04 1.92 5.65 -2.39 -0.01 1.91 16 26 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.02 1.25 7.85 -2.39 -0.02 1.24 16 28 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.07 3.81 5.95 -2.39 -0.01 3.80 16 30 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 31 H 0.40 12.58 7.53 -92.71 -0.70 11.88 16 32 H 0.08 1.77 7.75 -2.39 -0.02 1.75 16 33 H 0.05 1.26 8.05 -2.39 -0.02 1.24 16 34 H 0.11 0.68 6.71 -2.39 -0.02 0.67 16 35 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.40 5.92 8.91 -92.71 -0.83 5.10 16 37 H 0.10 1.66 8.13 -2.39 -0.02 1.64 16 38 H 0.13 1.15 6.77 -2.39 -0.02 1.13 16 39 H 0.05 1.20 7.86 -2.39 -0.02 1.18 16 40 H 0.09 1.76 6.96 -2.38 -0.02 1.74 16 Total: -1.00 -73.26 313.40 0.78 -72.48 By element: Atomic # 1 Polarization: 24.44 SS G_CDS: -0.46 Total: 23.98 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: 3.65 Total: 0.36 kcal Atomic # 7 Polarization: -89.97 SS G_CDS: -4.35 Total: -94.31 kcal Atomic # 8 Polarization: -45.55 SS G_CDS: -0.09 Total: -45.64 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.13 kcal Total: -73.26 0.78 -72.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347691887.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.655 kcal (2) G-P(sol) polarization free energy of solvation -73.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds